Miyakogusa Predicted Gene

Lj6g3v1201360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1201360.1 Non Chatacterized Hit- tr|K4A1U8|K4A1U8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si032843,38.1,8e-17,seg,NULL; S_R_A_B_BARREL,Stress responsive
alpha-beta barrel; Stress responsive A/B Barrel Domain,St,CUFF.59239.1
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31670.1 | Symbols:  | Stress responsive alpha-beta barrel do...   168   2e-42
AT1G51360.1 | Symbols: ATDABB1, DABB1 | dimeric A/B barrel domai...   120   5e-28

>AT2G31670.1 | Symbols:  | Stress responsive alpha-beta barrel
           domain protein | chr2:13472699-13473490 REVERSE
           LENGTH=263
          Length = 263

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 129/221 (58%), Gaps = 16/221 (7%)

Query: 2   SSAASHAVEHIVLIRVKDDVEPSKV----NDIRSLATLDQVRHLTVGPVLRSHATTTNAT 57
           S+  S  +EHIVL + KDD + +K+    N++ +LA LDQV H++  P+ R  + T    
Sbjct: 42  STPQSQIIEHIVLFKTKDDADSTKITSMINNLNALAYLDQVLHISTSPLHRISSATA--- 98

Query: 58  SDLRFTHLLHSRYDSKEDLEAYNAHPRHLGAVRGSLFPICGDLMAVDWFGDEDALPPHPT 117
               FTH+LHSRY+SKEDL +Y AHP H+  V+ S+ PIC D+MAVDW  D       P 
Sbjct: 99  ----FTHVLHSRYESKEDLASYAAHPDHVRVVKESVLPICDDIMAVDWIADRIPGTVAPL 154

Query: 118 PGSAIRVSFLKLKDGAGGEVKDEVLDAVRKMRXXXXXXXXXXXXXNFSPEWAKGLSIASL 177
           PGS  +++ LKLK+    E K E+   ++ +              NFSP  AKG SIAS+
Sbjct: 155 PGSVAKLTLLKLKEDVADEAKSEITGVIKGLSEKFPGIDQITVGENFSPARAKGFSIASI 214

Query: 178 AVFPGRKELEEVDPNEWLV-----KVREHLESVVVVDYVLP 213
           A F    E+E VD  + LV     KVR++++S +VV++V+P
Sbjct: 215 AYFKDLSEMEAVDAQKELVNSQKDKVRDYVDSTIVVEFVVP 255


>AT1G51360.1 | Symbols: ATDABB1, DABB1 | dimeric A/B barrel
           domainS-protein 1 | chr1:19044208-19044840 FORWARD
           LENGTH=210
          Length = 210

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 114/215 (53%), Gaps = 16/215 (7%)

Query: 6   SHAVEHIVLIRVKDD-VEPSK----VNDIRSLATLDQVRHLTVGPVLRSHATTTNATSDL 60
           S  VEH+VL ++ DD V+  K    VN I  L  LDQV HL  G +   H   T   SD 
Sbjct: 2   SSIVEHVVLFKLNDDDVDSGKINSMVNGINELVNLDQVLHLYCGSI---HRLITTTASD- 57

Query: 61  RFTHLLHSRYDSKEDLEAYNAHPRHLGAVRGSLFPICGDLMAVDWFGDEDALPPHPTPGS 120
            FTH+LHSRY SKEDL AY  HP H+  V+ S   I  D+MAVDW  ++      P  GS
Sbjct: 58  -FTHVLHSRYRSKEDLNAYAIHPDHVRVVKESE-SIREDIMAVDWIAEQAPEALAPPLGS 115

Query: 121 AIRVSFLKLKDGAGGEVKDEVLDAVRKMRXXXXXXXXXXXXXNFSPEWAKGLSIASLAVF 180
             +++ LKLK+    E K E+++    M+             NFSP  +K  SI S++ F
Sbjct: 116 IGKITLLKLKENVMEEAKLEIMEV---MKEKFEGIDQITVGENFSPGRSKDFSIGSISYF 172

Query: 181 PGRKELEEVDPNEWLV--KVREHLESVVVVDYVLP 213
               E+E VD    L   K+R++++  +VV++ +P
Sbjct: 173 RDLGEIEAVDDQMKLQNDKIRDYVDDTIVVEFNVP 207