Miyakogusa Predicted Gene

Lj6g3v1187440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1187440.1 CUFF.59218.1
         (357 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06005.1 | Symbols: FIP1 | FRIGIDA interacting protein 1 | ch...   496   e-141
AT5G20580.2 | Symbols:  | BEST Arabidopsis thaliana protein matc...   457   e-129
AT5G20580.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   452   e-127
AT2G06005.2 | Symbols: FIP1 | FRIGIDA interacting protein 1 | ch...   385   e-107

>AT2G06005.1 | Symbols: FIP1 | FRIGIDA interacting protein 1 |
           chr2:2332583-2336022 FORWARD LENGTH=355
          Length = 355

 Score =  496 bits (1277), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/355 (69%), Positives = 280/355 (78%), Gaps = 1/355 (0%)

Query: 1   MATERYASPPATTSPEDNALFLDILHEAPLFAHRKAARIVGSVFYCILLAGYATLAIGAT 60
           M+TER AS    T+ E+NA+FLDILHEAPLF HRK+  +VGS  Y +LLAGYA LA GA 
Sbjct: 1   MSTERRASSNPMTN-EENAMFLDILHEAPLFGHRKSRSLVGSYLYMLLLAGYAILAAGAP 59

Query: 61  WIFRPVQGLMSPVLCSCDVXXXXXTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 120
           W+F  VQ L   +LC CDV     TG+FQQY VYQVQKIRLQGYYSFSQKLK +VR+PFA
Sbjct: 60  WMFHRVQQLTPSLLCCCDVALLVVTGVFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query: 121 VTAYGTAAMLLVIVWKAYTGFLSISAILRIIMIVEAVCAGCFMSLYIGYIHQYNSLNSHP 180
           + AYGTAAMLLVIVW+     LSIS++ RIIM+VEAV AG FM LYIGY+HQYNS+NS P
Sbjct: 120 IAAYGTAAMLLVIVWRPQIHILSISSLQRIIMLVEAVGAGFFMGLYIGYVHQYNSVNSRP 179

Query: 181 DVXXXXXXXXXXXXXXEGLRYYDGRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYER 240
           DV              EGLRYY+GRLSDQQ ALLQYQRENLHFLSEEIL LQE LSKYE+
Sbjct: 180 DVLKSLYSPLQPSSSMEGLRYYEGRLSDQQTALLQYQRENLHFLSEEILCLQEKLSKYEQ 239

Query: 241 TDDRSTPQVDLAHLLAVRDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRSTNNQY 300
           +DD STPQVDLAHLLA RDQELRTLSAEMNQ+QSELRLARSLIAERD+E+Q V STNNQY
Sbjct: 240 SDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQY 299

Query: 301 VEENERLRAILGEWSTRAAKLERALETERMSNIELQRKISTLRHQSHMSREATEH 355
           +EENERLRAIL EWS RAA LERALE ERMSN ELQ+++++ R +  +    +E 
Sbjct: 300 IEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVASTRRKQMLETTTSEQ 354


>AT5G20580.2 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1);
           Has 35333 Blast hits to 34131 proteins in 2444 species:
           Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
           991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
           (source: NCBI BLink). | chr5:6958790-6962592 REVERSE
           LENGTH=348
          Length = 348

 Score =  457 bits (1175), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/350 (65%), Positives = 271/350 (77%), Gaps = 3/350 (0%)

Query: 1   MATERYASPPATTSPEDNALFLDILHEAPLFAHRKAARIVGSVFYCILLAGYATLAIGAT 60
           MA +R AS    ++ +DNA+FLDILHEAPLF HR++  +VGS  Y I+LAGYA LA GA 
Sbjct: 1   MANDRRASSVNPSTEQDNAMFLDILHEAPLFGHRESRSLVGSCIYLIILAGYAILAAGAP 60

Query: 61  WIFRPVQGLMSPVLCSCDVXXXXXTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 120
           WI + V  L+  +LCSC+V     TG+FQQY V QVQKIRLQGYYSFSQKLK +VR+PFA
Sbjct: 61  WILQSVDYLIPSLLCSCNVALLMLTGMFQQYFVNQVQKIRLQGYYSFSQKLKHVVRLPFA 120

Query: 121 VTAYGTAAMLLVIVWKAYTGFLSISAILRIIMIVEAVCAGCFMSLYIGYIHQYNSLNSHP 180
           + AYGTA+MLL + W+ Y   L I  + R IM VEA+ A  FM +++GY+ QYNS+NS P
Sbjct: 121 IMAYGTASMLLFMEWRPYVSVLPIFTVQRFIMSVEAISAASFMIVFVGYVRQYNSVNSQP 180

Query: 181 DVXXXXXXXXXXXXXXEGLRYYD-GRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 239
           DV              EGLRY++ GRLSDQQMALLQYQRENLH+LSEEILRLQE LSKYE
Sbjct: 181 DV-LNSLYSPLQPAALEGLRYHEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYE 239

Query: 240 RTDDRSTPQVDLAHLLAVRDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRSTNNQ 299
            T+  STPQVDLAHL+A RDQELRTLSAE++Q+ SEL LARSLI+ERD EIQHVR+TNNQ
Sbjct: 240 -TNGSSTPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQ 298

Query: 300 YVEENERLRAILGEWSTRAAKLERALETERMSNIELQRKISTLRHQSHMS 349
           YV ENERLRAILGEWS RAAKLERALE ER+SNIEL++K+S LR Q  ++
Sbjct: 299 YVAENERLRAILGEWSMRAAKLERALEVERISNIELRKKVSALRDQRQVA 348


>AT5G20580.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1);
           Has 167 Blast hits to 167 proteins in 73 species: Archae
           - 0; Bacteria - 25; Metazoa - 58; Fungi - 25; Plants -
           43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI
           BLink). | chr5:6958790-6962592 REVERSE LENGTH=348
          Length = 348

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/350 (64%), Positives = 270/350 (77%), Gaps = 3/350 (0%)

Query: 1   MATERYASPPATTSPEDNALFLDILHEAPLFAHRKAARIVGSVFYCILLAGYATLAIGAT 60
           MA +R AS    ++ +DNA+FLDILHEAPLF HR++  +VGS  Y I+LA YA LA GA 
Sbjct: 1   MANDRRASSVNPSTEQDNAMFLDILHEAPLFGHRESRSLVGSCIYLIILACYAILAAGAP 60

Query: 61  WIFRPVQGLMSPVLCSCDVXXXXXTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 120
           WI + V  L+  +LCSC+V     TG+FQQY V QVQKIRLQGYYSFSQKLK +VR+PFA
Sbjct: 61  WILQSVDYLIPSLLCSCNVALLMLTGMFQQYFVNQVQKIRLQGYYSFSQKLKHVVRLPFA 120

Query: 121 VTAYGTAAMLLVIVWKAYTGFLSISAILRIIMIVEAVCAGCFMSLYIGYIHQYNSLNSHP 180
           + AYGTA+MLL + W+ Y   L I  + R IM VEA+ A  FM +++GY+ QYNS+NS P
Sbjct: 121 IMAYGTASMLLFMEWRPYVSVLPIFTVQRFIMSVEAISAASFMIVFVGYVRQYNSVNSQP 180

Query: 181 DVXXXXXXXXXXXXXXEGLRYYD-GRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 239
           DV              EGLRY++ GRLSDQQMALLQYQRENLH+LSEEILRLQE LSKYE
Sbjct: 181 DV-LNSLYSPLQPAALEGLRYHEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYE 239

Query: 240 RTDDRSTPQVDLAHLLAVRDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRSTNNQ 299
            T+  STPQVDLAHL+A RDQELRTLSAE++Q+ SEL LARSLI+ERD EIQHVR+TNNQ
Sbjct: 240 -TNGSSTPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQ 298

Query: 300 YVEENERLRAILGEWSTRAAKLERALETERMSNIELQRKISTLRHQSHMS 349
           YV ENERLRAILGEWS RAAKLERALE ER+SNIEL++K+S LR Q  ++
Sbjct: 299 YVAENERLRAILGEWSMRAAKLERALEVERISNIELRKKVSALRDQRQVA 348


>AT2G06005.2 | Symbols: FIP1 | FRIGIDA interacting protein 1 |
           chr2:2333023-2336022 FORWARD LENGTH=282
          Length = 282

 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/294 (67%), Positives = 222/294 (75%), Gaps = 13/294 (4%)

Query: 62  IFRPVQGLMSPVLCSCDVXXXXXTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFAV 121
           +F  VQ L   +LC CDV     TG+FQQY VYQVQKIRLQGYYSFSQKLK +VR+PFA+
Sbjct: 1   MFHRVQQLTPSLLCCCDVALLVVTGVFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFAI 60

Query: 122 TAYGTAAMLLVIVWKAYTGFLSISAILRIIMIVEAVCAGCFMSLYIGYIHQYNSLNSHPD 181
            AYGTAAMLLVIVW+     LSIS++ RIIM+VEAV AG FM LYI             D
Sbjct: 61  AAYGTAAMLLVIVWRPQIHILSISSLQRIIMLVEAVGAGFFMGLYI-------------D 107

Query: 182 VXXXXXXXXXXXXXXEGLRYYDGRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYERT 241
           V              EGLRYY+GRLSDQQ ALLQYQRENLHFLSEEIL LQE LSKYE++
Sbjct: 108 VLKSLYSPLQPSSSMEGLRYYEGRLSDQQTALLQYQRENLHFLSEEILCLQEKLSKYEQS 167

Query: 242 DDRSTPQVDLAHLLAVRDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRSTNNQYV 301
           DD STPQVDLAHLLA RDQELRTLSAEMNQ+QSELRLARSLIAERD+E+Q V STNNQY+
Sbjct: 168 DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQYI 227

Query: 302 EENERLRAILGEWSTRAAKLERALETERMSNIELQRKISTLRHQSHMSREATEH 355
           EENERLRAIL EWS RAA LERALE ERMSN ELQ+++++ R +  +    +E 
Sbjct: 228 EENERLRAILSEWSMRAANLERALEVERMSNSELQKEVASTRRKQMLETTTSEQ 281