Miyakogusa Predicted Gene

Lj6g3v1177360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1177360.1 tr|B9VI84|B9VI84_ORYSJ Truncated keratin
associated protein OS=Oryza sativa subsp. japonica GN=pay1
,42.61,7e-17,G-gamma,G-protein gamma-like domain; seg,NULL;
coiled-coil,NULL,CUFF.59209.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20635.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   116   7e-27

>AT5G20635.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           keratin filament, chloroplast; CONTAINS InterPro
           DOMAIN/s: Keratin, high sulphur B2 protein
           (InterPro:IPR002494); Has 6153 Blast hits to 2882
           proteins in 265 species: Archae - 6; Bacteria - 47;
           Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30;
           Other Eukaryotes - 1038 (source: NCBI BLink). |
           chr5:6979314-6981767 REVERSE LENGTH=251
          Length = 251

 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 62/72 (86%)

Query: 29  PDLYGKRRQTAKIQMLEREISFLEEELKSSEGLQPASRCCKEIDDFVIANSDPLLPTSKK 88
           PDLYGKRR+ A++QMLEREI FLE E+K  EG+QPASRC KE+ DFV+ANSDPL+P  +K
Sbjct: 42  PDLYGKRREAARVQMLEREIGFLEGEIKFIEGVQPASRCIKEVSDFVVANSDPLIPAQRK 101

Query: 89  NRRSCRFWKWLC 100
           +RRS RFWKWLC
Sbjct: 102 SRRSFRFWKWLC 113