Miyakogusa Predicted Gene
- Lj6g3v1177290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1177290.1 Non Chatacterized Hit- tr|F6HUU4|F6HUU4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,27.92,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; PPR_2,Pentatricopeptide repeat; PPR,Penta,CUFF.59200.1
(297 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43790.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 314 4e-86
AT5G66520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 162 3e-40
AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor 21 ... 155 3e-38
AT3G28660.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 152 3e-37
AT3G28640.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 152 3e-37
AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-li... 151 5e-37
AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 151 7e-37
AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-95110... 141 5e-34
AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-li... 141 6e-34
AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-li... 140 7e-34
AT1G31920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 140 1e-33
AT2G42920.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 139 3e-33
AT4G18840.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 139 3e-33
AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) su... 135 2e-32
AT2G34400.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 135 3e-32
AT3G26630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 135 3e-32
AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR) su... 134 9e-32
AT4G21065.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 132 3e-31
AT4G37380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 131 6e-31
AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-li... 127 9e-30
AT5G06540.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 126 2e-29
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-li... 126 2e-29
AT5G27110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 126 2e-29
AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor 22 ... 125 4e-29
AT1G31430.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 125 5e-29
AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 124 8e-29
AT4G14820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 123 2e-28
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su... 122 2e-28
AT4G39530.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 120 9e-28
AT1G69350.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 119 2e-27
AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) D... 119 3e-27
AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor 19 ... 119 3e-27
AT3G08820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 119 4e-27
AT3G22690.2 | Symbols: | INVOLVED IN: photosystem II assembly, ... 118 5e-27
AT5G15300.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 117 7e-27
AT3G25060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 117 7e-27
AT5G40405.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 117 1e-26
AT3G62890.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 116 2e-26
AT5G08305.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 116 2e-26
AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 115 3e-26
AT4G30700.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 115 5e-26
AT3G04750.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 114 6e-26
AT3G13770.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 114 6e-26
AT1G50270.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 114 6e-26
AT1G04840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 114 7e-26
AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of... 114 8e-26
AT4G25270.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 114 8e-26
AT5G61800.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 114 1e-25
AT3G24000.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 113 1e-25
AT3G56550.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 112 2e-25
AT2G03380.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 112 2e-25
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li... 112 3e-25
AT1G10330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 111 6e-25
AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-lik... 111 7e-25
AT1G26900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 109 2e-24
AT1G33350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 109 3e-24
AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-... 108 5e-24
AT1G34160.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 108 5e-24
AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat ... 107 1e-23
AT2G40720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 107 1e-23
AT4G18520.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 106 2e-23
AT5G16860.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 106 2e-23
AT5G56310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 105 2e-23
AT5G44230.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 105 3e-23
AT2G13600.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 105 4e-23
AT4G38010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 105 4e-23
AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 104 6e-23
AT4G20770.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 104 9e-23
AT2G01510.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 103 1e-22
AT3G09040.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 103 2e-22
AT1G77170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 102 2e-22
AT3G23330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 102 2e-22
AT4G13650.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 102 3e-22
AT3G25970.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 102 3e-22
AT1G06140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 102 3e-22
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup... 101 5e-22
AT2G33680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 101 7e-22
AT3G15930.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 100 1e-21
AT3G50420.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 100 1e-21
AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor 20 ... 100 1e-21
AT3G03580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 100 1e-21
AT3G51320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 100 2e-21
AT3G53360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 100 2e-21
AT1G64310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 99 3e-21
AT1G71460.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 99 3e-21
AT5G50390.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 99 5e-21
AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR) su... 98 6e-21
AT4G15720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 98 7e-21
AT4G39952.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 98 8e-21
AT4G35130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 97 1e-20
AT1G09190.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 97 1e-20
AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 97 1e-20
AT3G26540.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 97 2e-20
AT3G15130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 97 2e-20
AT3G16610.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 97 2e-20
AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 96 3e-20
AT1G18485.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 96 4e-20
AT3G13880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 95 7e-20
AT4G21300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 94 1e-19
AT2G44880.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 94 1e-19
AT4G37170.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 94 1e-19
AT5G40410.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 93 2e-19
AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-li... 93 3e-19
AT3G01580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 92 3e-19
AT4G33170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 92 4e-19
AT5G39350.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 92 4e-19
AT5G13230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 92 4e-19
AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (P... 92 4e-19
AT2G02750.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 92 4e-19
AT3G47840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 92 5e-19
AT1G74600.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 92 5e-19
AT3G21470.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 91 6e-19
AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) sup... 91 7e-19
AT1G74630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 91 8e-19
AT1G28690.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 91 1e-18
AT4G21065.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 91 1e-18
AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 91 1e-18
AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide re... 91 1e-18
AT1G25360.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 90 2e-18
AT2G22070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 90 2e-18
AT1G77010.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 90 2e-18
AT2G39620.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 90 2e-18
AT1G22830.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 89 2e-18
AT1G22830.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 89 2e-18
AT4G19191.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 89 3e-18
AT2G41080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 89 3e-18
AT3G22150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 89 3e-18
AT3G61170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 89 3e-18
AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-... 89 4e-18
AT3G14730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 89 4e-18
AT1G14470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 89 4e-18
AT4G14170.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 89 4e-18
AT3G49740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 88 8e-18
AT1G20230.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 88 8e-18
AT3G49710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 87 1e-17
AT4G14050.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 87 1e-17
AT3G02010.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 87 1e-17
AT2G27610.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 86 2e-17
AT4G31070.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 86 2e-17
AT5G46460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 86 3e-17
AT1G56570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 86 4e-17
AT2G17210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 86 4e-17
AT1G16480.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 85 5e-17
AT1G16480.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 85 5e-17
AT1G68930.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 85 6e-17
AT5G65570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 85 7e-17
AT3G47530.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 84 9e-17
AT2G36980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 84 1e-16
AT3G26782.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 84 1e-16
AT4G22760.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 84 2e-16
AT2G04860.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 83 2e-16
AT2G37320.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 83 3e-16
AT1G19720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 82 4e-16
AT3G11460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 82 6e-16
AT1G43980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 82 6e-16
AT4G16470.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 81 8e-16
AT1G03510.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 80 1e-15
AT3G29230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 80 1e-15
AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopepti... 80 1e-15
AT4G19220.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 80 2e-15
AT4G08210.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 80 2e-15
AT5G04780.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 79 3e-15
AT3G02330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 78 6e-15
AT3G14330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 78 6e-15
AT1G56690.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 77 1e-14
AT2G21090.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 77 1e-14
AT3G18840.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 77 1e-14
AT5G37570.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 77 2e-14
AT1G17630.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 77 2e-14
AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 77 2e-14
AT4G01030.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 77 2e-14
AT1G13410.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 76 2e-14
AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR) ... 76 3e-14
AT3G20730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 75 4e-14
AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR) su... 75 4e-14
AT3G49142.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 75 6e-14
AT5G47460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 74 9e-14
AT5G09950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 74 1e-13
AT4G32430.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 74 1e-13
AT4G02750.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 74 1e-13
AT5G42450.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 74 1e-13
AT2G46050.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 74 1e-13
AT1G71490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 73 2e-13
AT5G08490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 72 5e-13
AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor 18 ... 71 7e-13
AT2G35030.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 71 9e-13
AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 71 1e-12
AT5G66500.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 70 1e-12
AT1G74400.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 70 1e-12
AT3G58590.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 70 2e-12
AT5G15340.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 70 2e-12
AT1G71420.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 69 3e-12
AT1G53600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 69 4e-12
AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 ... 68 7e-12
AT5G50990.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 67 1e-11
AT1G09220.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 66 4e-11
AT1G23450.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 4e-10
AT5G59600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 5e-10
AT4G16835.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 61 1e-09
AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 | c... 61 1e-09
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 60 2e-09
AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 59 5e-09
AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 57 1e-08
AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 3e-07
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 1e-06
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 50 2e-06
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232... 50 2e-06
AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 6e-06
>AT5G43790.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:17592099-17593481 REVERSE
LENGTH=460
Length = 460
Score = 314 bits (805), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/293 (54%), Positives = 209/293 (71%), Gaps = 17/293 (5%)
Query: 9 NHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPN 68
NH L L+ KC SL LKQ+HAQ++T GL+ HTY LS LL +SS + +YAL+I IPN
Sbjct: 9 NHRCLNLISKCKSLQNLKQIHAQIITIGLSHHTYPLSKLLHLSSTVCLSYALSILRQIPN 68
Query: 69 PTVFLYNTLISSFTSH--SSQIHLAFSLYNRILAHKT--LQPNSFTFPSLFKACCGSGHW 124
P+VFLYNTLISS S+ S+Q HLAFSLY++IL+ ++ ++PN FT+PSLFKA W
Sbjct: 69 PSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQW 128
Query: 125 FQYGPPLHAHVLKFLEP-PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
++G LHAHVLKFLEP +D FVQA+L+ FYA G+L +R LF++I EPDLATWNTLL
Sbjct: 129 HRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLL 188
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
E+ D E L LF MQ+ RPNE++LVALI +C+NLG +GV
Sbjct: 189 AAYANS---------EEIDSDEEVLLLFMRMQV---RPNELSLVALIKSCANLGEFVRGV 236
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
W H Y+L+NNL LN+FVGT+L+D+YSKCGCL+ A ++FD+++ RD CYNAMI
Sbjct: 237 WAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMI 289
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 36/231 (15%)
Query: 30 AQMLTTGLALHTYCL------SHLLTISSKLASTYA--------LTIFSSIPNPTVFLYN 75
AQ G ALH + L +H + + L YA ++F I P + +N
Sbjct: 126 AQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWN 185
Query: 76 TLISSFTSHSSQI---HLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLH 132
TL++++ ++S +I L+ R+ ++PN + +L K+C G F G H
Sbjct: 186 TLLAAY-ANSEEIDSDEEVLLLFMRM----QVRPNELSLVALIKSCANLGE-FVRGVWAH 239
Query: 133 AHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXX 192
+VLK + FV SL++ Y+K G L +R +FD++S+ D++ +N ++
Sbjct: 240 VYVLKN-NLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRG------- 291
Query: 193 XXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
L E + L+ + P+ T V ISACS+ G + +G+
Sbjct: 292 -----LAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGL 337
>AT5G66520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26551879-26553741 FORWARD
LENGTH=620
Length = 620
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 153/304 (50%), Gaps = 27/304 (8%)
Query: 16 LQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLT--ISSKLAS--TYALTIFSSIPNPTV 71
LQ+C LKQ+HA+ML TGL +Y ++ L+ ISS + YA +F P
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
FL+N +I F S S + + LY R+L + N++TFPSL KAC F+ +
Sbjct: 81 FLWNLMIRGF-SCSDEPERSLLLYQRMLC-SSAPHNAYTFPSLLKACSNLSA-FEETTQI 137
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
HA + K L D + SL+N YA G ++ LFD+I EPD +WN+++
Sbjct: 138 HAQITK-LGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 192 XXXXXXL-------------------EDADLSLEALYLFCDMQMSRRRPNEVTLVALISA 232
L AD++ EAL LF +MQ S P+ V+L +SA
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 233 CSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCY 292
C+ LGAL QG W H YL + ++++ +G L+DMY+KCG + A ++F + + +
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAW 316
Query: 293 NAMI 296
A+I
Sbjct: 317 TALI 320
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 125/306 (40%), Gaps = 52/306 (16%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLASTYALT--IFSSIPNP 69
LL+ C +L+ + Q+HAQ+ G Y ++ L+ S + + L +F IP P
Sbjct: 121 LLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLIN-SYAVTGNFKLAHLLFDRIPEP 179
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRI------------------------------L 99
+N++I + + ++ +A +L+ ++ +
Sbjct: 180 DDVSWNSVIKGYVK-AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEM 238
Query: 100 AHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYG 159
+ ++P++ + + AC G + G +H+++ K D + L++ YAK G
Sbjct: 239 QNSDVEPDNVSLANALSACAQLGA-LEQGKWIHSYLNK-TRIRMDSVLGCVLIDMYAKCG 296
Query: 160 RLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR 219
+ + +F I + + W L+ EA+ F +MQ
Sbjct: 297 EMEEALEVFKNIKKKSVQAWTALISGYAYHGH------------GREAISKFMEMQKMGI 344
Query: 220 RPNEVTLVALISACSNLGALSQGVWTHCYLLRN-NLKLNRFVGTALVDMYSKCGCLNLAC 278
+PN +T A+++ACS G + +G + R+ NLK +VD+ + G L+ A
Sbjct: 345 KPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAK 404
Query: 279 QLFDQL 284
+ ++
Sbjct: 405 RFIQEM 410
>AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor 21 |
chr2:8844160-8845764 FORWARD LENGTH=534
Length = 534
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 158/304 (51%), Gaps = 23/304 (7%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTV 71
+ LQ+ S N K+++A ++ GL+ ++ ++ ++ K+ YA +F+ + NP V
Sbjct: 14 IPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNV 73
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
FLYN++I ++T H+S +Y ++L P+ FTFP +FK+C G + G +
Sbjct: 74 FLYNSIIRAYT-HNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCY-LGKQV 131
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
H H+ KF P + + +L++ Y K+ L + +FD++ E D+ +WN+LL
Sbjct: 132 HGHLCKF-GPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190
Query: 192 XXXXX-----XLEDADLS--------------LEALYLFCDMQMSRRRPNEVTLVALISA 232
L+ +S +EA+ F +MQ++ P+E++L++++ +
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPS 250
Query: 233 CSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCY 292
C+ LG+L G W H Y R V AL++MYSKCG ++ A QLF Q+ +D +
Sbjct: 251 CAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISW 310
Query: 293 NAMI 296
+ MI
Sbjct: 311 STMI 314
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 104/229 (45%), Gaps = 29/229 (12%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F + + T+ + +IS +T + A + R + ++P+ + S+ +C
Sbjct: 194 AKGLFHLMLDKTIVSWTAMISGYTGIGCYVE-AMDFF-REMQLAGIEPDEISLISVLPSC 251
Query: 119 C--GS---GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISE 173
GS G W L+A FL+ V +L+ Y+K G + + LF Q+
Sbjct: 252 AQLGSLELGKWIH----LYAERRGFLKQTG---VCNALIEMYSKCGVISQAIQLFGQMEG 304
Query: 174 PDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISAC 233
D+ +W+T++ A+ F +MQ ++ +PN +T + L+SAC
Sbjct: 305 KDVISWSTMISGYAYHGNAHG------------AIETFNEMQRAKVKPNGITFLGLLSAC 352
Query: 234 SNLGALSQGVWTHCYLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQL 280
S++G +G+ + ++R + ++ + L+D+ ++ G L A ++
Sbjct: 353 SHVGMWQEGL-RYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEI 400
>AT3G28660.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:10739400-10740914 REVERSE
LENGTH=504
Length = 504
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 153/289 (52%), Gaps = 22/289 (7%)
Query: 17 QKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-----YALTIFSSIPNPTV 71
Q+C+++ +K H+ + GL +TY +S LLT L + YA +IF SI P
Sbjct: 19 QRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNS 78
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKT--LQPNSFTFPSLFKACCGSGHWFQYGP 129
F+Y+T+I S SSQ HL + ++ + + P+ TF L AC + +F G
Sbjct: 79 FVYDTMIR-ICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKAC-FFSVGK 136
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+H V+K D VQ +L Y + L +R +FD+I +PD+ W+ L+
Sbjct: 137 QIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVR- 195
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
L E L +F +M + P+E ++ ++AC+ +GAL+QG W H ++
Sbjct: 196 -----------CGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFV 244
Query: 250 LRNN-LKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+ ++ + FVGTALVDMY+KCGC+ A ++F++LT R+ F + A+IG
Sbjct: 245 KKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIG 293
>AT3G28640.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:10731518-10733032 REVERSE
LENGTH=504
Length = 504
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 153/289 (52%), Gaps = 22/289 (7%)
Query: 17 QKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-----YALTIFSSIPNPTV 71
Q+C+++ +K H+ + GL +TY +S LLT L + YA +IF SI P
Sbjct: 19 QRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNS 78
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKT--LQPNSFTFPSLFKACCGSGHWFQYGP 129
F+Y+T+I S SSQ HL + ++ + + P+ TF L AC + +F G
Sbjct: 79 FVYDTMIR-ICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKAC-FFSVGK 136
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+H V+K D VQ +L Y + L +R +FD+I +PD+ W+ L+
Sbjct: 137 QIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVR- 195
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
L E L +F +M + P+E ++ ++AC+ +GAL+QG W H ++
Sbjct: 196 -----------CGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFV 244
Query: 250 LRNN-LKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+ + ++ + FVGTALVDMY+KCGC+ A ++F +LT R+ F + A+IG
Sbjct: 245 KKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIG 293
>AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2514374-2516599 REVERSE
LENGTH=741
Length = 741
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 159/316 (50%), Gaps = 27/316 (8%)
Query: 5 NPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLT---ISSKLAS-TYAL 60
+ I NHP L LL C +L +L+ +HAQM+ GL Y LS L+ +S YA+
Sbjct: 29 DSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAI 88
Query: 61 TIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG 120
++F +I P + ++NT+ S + A LY +++ L PNS+TFP + K+C
Sbjct: 89 SVFKTIQEPNLLIWNTMFRGHALSSDPVS-ALKLYVCMISLGLL-PNSYTFPFVLKSCAK 146
Query: 121 SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
S F+ G +H HVLK L D +V SL++ Y + GRL + +FD+ D+ ++
Sbjct: 147 S-KAFKEGQQIHGHVLK-LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT 204
Query: 181 TLLXXXXXXXXXXXXXXLED-----------ADLS--------LEALYLFCDMQMSRRRP 221
L+ L D A +S EAL LF DM + RP
Sbjct: 205 ALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRP 264
Query: 222 NEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLF 281
+E T+V ++SAC+ G++ G H ++ + N + AL+D+YSKCG L AC LF
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324
Query: 282 DQLTDRDTFCYNAMIG 297
++L +D +N +IG
Sbjct: 325 ERLPYKDVISWNTLIG 340
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 18/240 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F IP V +N +IS + + + A L+ ++ ++P+ T ++ AC
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGY-AETGNYKEALELFKDMMK-TNVRPDESTMVTVVSAC 276
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
SG + G +H + V A L++ Y+K G L + LF+++ D+ +
Sbjct: 277 AQSGS-IELGRQVHLWIDDHGFGSNLKIVNA-LIDLYSKCGELETACGLFERLPYKDVIS 334
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WNTL+ +L EAL LF +M S PN+VT+++++ AC++LGA
Sbjct: 335 WNTLIGGYTHM------------NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 382
Query: 239 LSQGVWTHCYLLR--NNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ G W H Y+ + + + T+L+DMY+KCG + A Q+F+ + + +NAMI
Sbjct: 383 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 442
>AT2G33760.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:14275800-14277551 FORWARD
LENGTH=583
Length = 583
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 152/277 (54%), Gaps = 19/277 (6%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTIS-SKLASTYALTIFSSIPNPTVFLYNTLISS 80
+ L+QVHA ++ TG L+ L+T++ S A Y +F S+P P FL+N++I S
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS 81
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG-SGHWFQYGPPLHAHVLKFL 139
+ +H + Y R+L+ + P+++TF S+ K+C S G HA V F
Sbjct: 82 TSKLRLPLH-CVAYYRRMLS-SNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGF- 138
Query: 140 EPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLE 199
D +VQA+L+ FY+K G + +R +FD++ E + WN+L+ E
Sbjct: 139 --GLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSG------------FE 184
Query: 200 DADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRF 259
L+ EA+ +F M+ S P+ T V+L+SAC+ GA+S G W H Y++ L LN
Sbjct: 185 QNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVK 244
Query: 260 VGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+GTAL+++YS+CG + A ++FD++ + + + AMI
Sbjct: 245 LGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMI 281
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 34/288 (11%)
Query: 9 NHPILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFS 64
N+ +++ C L+ L K VH + +G L TY + L+T SK A +F
Sbjct: 107 NYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFD 166
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
+P ++ +N+L+S F + Y + +P+S TF SL AC +G
Sbjct: 167 RMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQ--MRESGFEPDSATFVSLLSACAQTGA- 223
Query: 125 FQYGPPLHAHVLKFLEPPYDHFVQ--ASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
G +H +++ D V+ +L+N Y++ G + +R +FD++ E ++A W +
Sbjct: 224 VSLGSWVHQYIIS---EGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAM 280
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMS-RRRPNEVTLVALISACSNLGALSQ 241
+ +A+ LF M+ PN VT VA++SAC++ G + +
Sbjct: 281 ISAYGTH------------GYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEE 328
Query: 242 G-----VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
G T Y L ++ + +VDM + G L+ A + QL
Sbjct: 329 GRSVYKRMTKSYRLIPGVEHH----VCMVDMLGRAGFLDEAYKFIHQL 372
>AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080
FORWARD LENGTH=681
Length = 681
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 153/295 (51%), Gaps = 20/295 (6%)
Query: 7 IFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLT---ISSKLASTYALTIF 63
+ ++P+L LL+KC L LKQ+ AQM+ GL L + S L+ +S Y++ I
Sbjct: 51 VLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL 110
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHK--TLQPNSFTFPSLFKACCGS 121
I NP +F +N I F S S +F LY ++L H +P+ FT+P LFK C
Sbjct: 111 KGIENPNIFSWNVTIRGF-SESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL 169
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
G + HVLK H AS+ + +A G + +R +FD+ DL +WN
Sbjct: 170 -RLSSLGHMILGHVLKLRLELVSHVHNASI-HMFASCGDMENARKVFDESPVRDLVSWNC 227
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
L+ + +A+ +A+Y++ M+ +P++VT++ L+S+CS LG L++
Sbjct: 228 LINGYKK---------IGEAE---KAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNR 275
Query: 242 GVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G + Y+ N L++ + AL+DM+SKCG ++ A ++FD L R + MI
Sbjct: 276 GKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMI 330
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 128/269 (47%), Gaps = 45/269 (16%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F P + +N LI+ + + A +Y +++ + ++P+ T L +C
Sbjct: 210 ARKVFDESPVRDLVSWNCLINGYKK-IGEAEKAIYVY-KLMESEGVKPDDVTMIGLVSSC 267
Query: 119 CGSGHWFQYGPPLHAHV----LKFLEP--------------------PYDHFVQASLLNF 154
G G + +V L+ P +D+ + +++++
Sbjct: 268 SMLGD-LNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSW 326
Query: 155 ------YAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEAL 208
YA+ G L VSR LFD + E D+ WN ++ A +AL
Sbjct: 327 TTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSV------------QAKRGQDAL 374
Query: 209 YLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMY 268
LF +MQ S +P+E+T++ +SACS LGAL G+W H Y+ + +L LN +GT+LVDMY
Sbjct: 375 ALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMY 434
Query: 269 SKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+KCG ++ A +F + R++ Y A+IG
Sbjct: 435 AKCGNISEALSVFHGIQTRNSLTYTAIIG 463
>AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21939868-21941784 REVERSE
LENGTH=638
Length = 638
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 146/292 (50%), Gaps = 22/292 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCL---SHLLTISSKLAST-YALTIFSSIP 67
I L + C ++ LKQ+HA L T L +L +SS + YA +F SI
Sbjct: 51 IFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIE 110
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
N + F++NTLI + S+ AF LY ++L P+ TFP + KA C F
Sbjct: 111 NHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKA-CAYIFGFSE 169
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G +H ++K D +V L++ Y G L ++R +FD++ E L +WN+++
Sbjct: 170 GKQVHCQIVKH-GFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 228
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
AL LF +MQ S P+ T+ +++SAC+ LG+LS G W H
Sbjct: 229 RFGEYD------------SALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLGTWAHA 275
Query: 248 YLLRN---NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+LLR ++ ++ V +L++MY KCG L +A Q+F + RD +NAMI
Sbjct: 276 FLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMI 327
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 21/236 (8%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+LK + KQVH Q++ G Y + L+ + A +F +P +
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ +N++I + + A L+ + ++ +P+ +T S+ AC G G G
Sbjct: 217 LVSWNSMIDALVRFG-EYDSALQLFREM--QRSFEPDGYTMQSVLSACAGLGS-LSLGTW 272
Query: 131 LHAHVLKF--LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
HA +L+ ++ D V+ SL+ Y K G L ++ +F + + DLA+WN ++
Sbjct: 273 AHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFAT 332
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRR--RPNEVTLVALISACSNLGALSQG 242
+ EA+ F M R RPN VT V L+ AC++ G +++G
Sbjct: 333 HGR------------AEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKG 376
>AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:23888793-23890427 REVERSE
LENGTH=544
Length = 544
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 28/305 (9%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPT 70
++ +L+ C ++ + +HA+++ T + + L+ + S L S YA +FS + NP
Sbjct: 32 LISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPN 91
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V+LY +I F S S + SLY+R++ H ++ P+++ S+ KAC +
Sbjct: 92 VYLYTAMIDGFVS-SGRSADGVSLYHRMI-HNSVLPDNYVITSVLKACD-----LKVCRE 144
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
+HA VLK L V ++ Y K G L ++ +FD++ + D ++
Sbjct: 145 IHAQVLK-LGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECG 203
Query: 191 XXXXXXXL-EDADLSL------------------EALYLFCDMQMSRRRPNEVTLVALIS 231
L +D + +AL LF +MQM NE T V ++S
Sbjct: 204 FIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLS 263
Query: 232 ACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
ACS+LGAL G W H ++ ++L+ FVG AL++MYS+CG +N A ++F + D+D
Sbjct: 264 ACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVIS 323
Query: 292 YNAMI 296
YN MI
Sbjct: 324 YNTMI 328
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 130/309 (42%), Gaps = 50/309 (16%)
Query: 9 NHPILKLLQKCHSLNTLKQVHAQMLTTGLA---------LHTYCLSHLLTISSKL----- 54
N+ I +L+ C L +++HAQ+L G + Y S L + K+
Sbjct: 127 NYVITSVLKAC-DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMP 185
Query: 55 -----ASTY-------------ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYN 96
A+T AL +F + + +I + +++ A L+
Sbjct: 186 DRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLV-RNKEMNKALELF- 243
Query: 97 RILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYA 156
R + + + N FT + AC G + G +H+ V + +FV +L+N Y+
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLG-ALELGRWVHSFV-ENQRMELSNFVGNALINMYS 301
Query: 157 KYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQM 216
+ G + +R +F + + D+ ++NT++ S+EA+ F DM
Sbjct: 302 RCGDINEARRVFRVMRDKDVISYNTMISGLAMHGA------------SVEAINEFRDMVN 349
Query: 217 SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN-NLKLNRFVGTALVDMYSKCGCLN 275
RPN+VTLVAL++ACS+ G L G+ + R N++ +VD+ + G L
Sbjct: 350 RGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLE 409
Query: 276 LACQLFDQL 284
A + + +
Sbjct: 410 EAYRFIENI 418
>AT1G31920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:11461864-11463684 REVERSE
LENGTH=606
Length = 606
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 149/290 (51%), Gaps = 22/290 (7%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTY-----CLSHLLTISSKLASTYALTIFSSIP 67
L LL++CH+++ KQVHA+ + L + L+ + + YA +IF I
Sbjct: 34 LYLLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGID 93
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
+P F +NT+I + + S A YN ++ + +P++FT+P L KAC +
Sbjct: 94 DPCTFDFNTMIRGYVNVMS-FEEALCFYNEMM-QRGNEPDNFTYPCLLKACTRLKS-IRE 150
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G +H V K L D FVQ SL+N Y + G + +S +F+++ A+W++++
Sbjct: 151 GKQIHGQVFK-LGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARA 209
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVWTH 246
+ E L LF M + + E +V+ + AC+N GAL+ G+ H
Sbjct: 210 GM------------GMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIH 257
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+LLRN +LN V T+LVDMY KCGCL+ A +F ++ R+ Y+AMI
Sbjct: 258 GFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMI 307
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 113/279 (40%), Gaps = 26/279 (9%)
Query: 8 FNHP-ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSS 65
F +P +LK + S+ KQ+H Q+ GL + + L+ + + + +F
Sbjct: 133 FTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEK 192
Query: 66 IPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF 125
+ + T +++++S+ L+ + + L+ S AC +G
Sbjct: 193 LESKTAASWSSMVSARAGMGMWSECLL-LFRGMCSETNLKAEESGMVSALLACANTGA-L 250
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
G +H +L+ + + VQ SL++ Y K G L + +F ++ + + T++ ++
Sbjct: 251 NLGMSIHGFLLRNI-SELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISG 309
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
AL +F M P+ V V++++ACS+ G + +G
Sbjct: 310 LALHGEGES------------ALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 357
Query: 246 HCYLLRNNLKLNRFVGTA-----LVDMYSKCGCLNLACQ 279
+ LK + TA LVD+ + G L A +
Sbjct: 358 FAEM----LKEGKVEPTAEHYGCLVDLLGRAGLLEEALE 392
>AT2G42920.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:17858705-17860384 FORWARD
LENGTH=559
Length = 559
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 160/320 (50%), Gaps = 28/320 (8%)
Query: 1 MKAQNPIFNHPILKLLQ-KCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTI--SSKLAST 57
M + + + L+L+ +C ++ LKQ+HA ++ TGL T S +L +S
Sbjct: 16 MPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMN 75
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRIL-AHKTLQPNSFTFPSLFK 116
YA +F+ I + F++NT+I F S SS +A S++ +L + +++P T+PS+FK
Sbjct: 76 YAYLVFTRINHKNPFVWNTIIRGF-SRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFK 134
Query: 117 ACCGSGHWFQYGPPLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD 175
A G + G LH V+K LE D F++ ++L+ Y G L + +F + D
Sbjct: 135 AYGRLGQ-ARDGRQLHGMVIKEGLED--DSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFD 191
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDA-------------------DLSLEALYLFCDMQM 216
+ WN+++ L D +AL +F +MQ
Sbjct: 192 VVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQE 251
Query: 217 SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNL 276
+P+ T+V+L++AC+ LGA QG W H Y++RN +LN V TAL+DMY KCGC+
Sbjct: 252 KDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEE 311
Query: 277 ACQLFDQLTDRDTFCYNAMI 296
+F+ + C+N+MI
Sbjct: 312 GLNVFECAPKKQLSCWNSMI 331
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 111/246 (45%), Gaps = 30/246 (12%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F +P +N++IS F + + A ++ R + K ++P+ FT SL AC
Sbjct: 211 AQNLFDEMPQRNGVSWNSMISGFV-RNGRFKDALDMF-REMQEKDVKPDGFTMVSLLNAC 268
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCL--FDQISEPDL 176
G Q G +H ++++ + V +L++ Y K G C+ L F+ + L
Sbjct: 269 AYLGASEQ-GRWIHEYIVRN-RFELNSIVVTALIDMYCKCG--CIEEGLNVFECAPKKQL 324
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
+ WN+++ L + A+ LF +++ S P+ V+ + +++AC++
Sbjct: 325 SCWNSMI------------LGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHS 372
Query: 237 GALSQG-----VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL-TDRDTF 290
G + + + Y++ ++K T +V++ G L A L + + DT
Sbjct: 373 GEVHRADEFFRLMKEKYMIEPSIKHY----TLMVNVLGGAGLLEEAEALIKNMPVEEDTV 428
Query: 291 CYNAMI 296
+++++
Sbjct: 429 IWSSLL 434
>AT4G18840.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:10338719-10340356 REVERSE
LENGTH=545
Length = 545
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 163/344 (47%), Gaps = 65/344 (18%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSK----LASTYALTIFSSI 66
PIL ++ SL ++Q HA ML TGL T+ S L+ ++ +YA +I + I
Sbjct: 41 PILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRI 100
Query: 67 PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC---CGSGH 123
+P F +N++I ++ ++SS +A +++ +L P+ ++F + KAC CG
Sbjct: 101 GSPNGFTHNSVIRAY-ANSSTPEVALTVFREMLLGPVF-PDKYSFTFVLKACAAFCG--- 155
Query: 124 WFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
F+ G +H +K D FV+ +L+N Y + G ++R + D++ D +WN+LL
Sbjct: 156 -FEEGRQIHGLFIKS-GLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLL 213
Query: 184 XXXXXXXXXXXXXXLED-------------------ADLSLEALYLFCDMQM-------- 216
L D A L EA +F M +
Sbjct: 214 SAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNA 273
Query: 217 ------------------------SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN 252
S +P+ TLV+++SAC++LG+LSQG W H Y+ ++
Sbjct: 274 MVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKH 333
Query: 253 NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ F+ TALVDMYSKCG ++ A ++F + RD +N++I
Sbjct: 334 GIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSII 377
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 119/245 (48%), Gaps = 25/245 (10%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F S+P V +N +++++ +H + ++N++L T +P+ FT S+ AC
Sbjct: 256 AKEVFDSMPVRDVVSWNAMVTAY-AHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSAC 314
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G Q G +H ++ K + F+ +L++ Y+K G++ + +F S+ D++T
Sbjct: 315 ASLGSLSQ-GEWVHVYIDKH-GIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVST 372
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WN+++ L L +AL +F +M +PN +T + ++SAC+++G
Sbjct: 373 WNSIISD------------LSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGM 420
Query: 239 LSQG-----VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL-TDRDTFCY 292
L Q + + Y + ++ +VD+ + G + A +L +++ D +
Sbjct: 421 LDQARKLFEMMSSVYRVEPTIEHY----GCMVDLLGRMGKIEEAEELVNEIPADEASILL 476
Query: 293 NAMIG 297
+++G
Sbjct: 477 ESLLG 481
>AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:19832969-19834909 REVERSE
LENGTH=646
Length = 646
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 153/320 (47%), Gaps = 41/320 (12%)
Query: 16 LQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTI--SSKLAS---TYALTIFSSIPNPT 70
+ C ++ L Q+HA + +G T + +L +S L YA IF+ +P
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89
Query: 71 VFLYNTLISSFT-SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
F +NT+I F+ S + +A +L+ +++ + ++PN FTFPS+ KAC +G Q G
Sbjct: 90 CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGK-IQEGK 148
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLF-DQISEPDLAT---------- 178
+H LK+ D FV ++L+ Y G + +R LF I E D+
Sbjct: 149 QIHGLALKY-GFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGE 207
Query: 179 ---WNTLLXXXXXXXXXXXXXXLED--------------ADLSL-----EALYLFCDMQM 216
WN ++ L D + SL +A+ +F +M+
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 217 SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNL 276
RPN VTLV+++ A S LG+L G W H Y + ++++ +G+AL+DMYSKCG +
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 277 ACQLFDQLTDRDTFCYNAMI 296
A +F++L + ++AMI
Sbjct: 328 AIHVFERLPRENVITWSAMI 347
>AT2G34400.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:14516226-14518186 FORWARD
LENGTH=621
Length = 621
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 18/295 (6%)
Query: 2 KAQNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALT 61
+A+ L LL+KC S+N L+Q+ AQML + + + + + Y+
Sbjct: 30 EARRGDLERDFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPKAVELGD---FNYSSF 86
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+FS P + +N +I T+ + A SLY R + L+P+ FT+ +F AC
Sbjct: 87 LFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRR-MKFSGLKPDKFTYNFVFIACAKL 145
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
G +H+ + K + D + SL+ YAK G++ +R LFD+I+E D +WN+
Sbjct: 146 EE-IGVGRSVHSSLFK-VGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNS 203
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
++ +A + +A+ LF M+ P+E TLV+++ ACS+LG L
Sbjct: 204 MISGYS------------EAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRT 251
Query: 242 GVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G + + L+ F+G+ L+ MY KCG L+ A ++F+Q+ +D + AMI
Sbjct: 252 GRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMI 306
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 17/280 (6%)
Query: 18 KCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFLYNT 76
K + + VH+ + GL + L+ + +K YA +F I +N+
Sbjct: 144 KLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNS 203
Query: 77 LISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVL 136
+IS + S + A L+ R + + +P+ T S+ AC G + G L +
Sbjct: 204 MISGY-SEAGYAKDAMDLF-RKMEEEGFEPDERTLVSMLGACSHLGD-LRTGRLLEEMAI 260
Query: 137 KFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXX 196
+ F+ + L++ Y K G L +R +F+Q+ + D W ++
Sbjct: 261 T-KKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGK----- 314
Query: 197 XLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKL 256
S EA LF +M+ + P+ TL ++SAC ++GAL G + +L+
Sbjct: 315 -------SSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQH 367
Query: 257 NRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
N +V T LVDMY KCG + A ++F+ + ++ +NAMI
Sbjct: 368 NIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMI 407
>AT3G26630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9791572-9792939 REVERSE
LENGTH=455
Length = 455
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 39/310 (12%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFL 73
L+ C + + LKQ+H +++ L + L+++SS T YA +F+ + +P+ F
Sbjct: 26 FLRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFT 85
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+N +I S + + +++H++ Q + FTFP + KAC S + G +H
Sbjct: 86 WNLMIRSLSVNHKPREALLLFILMMISHQS-QFDKFTFPFVIKACLASSS-IRLGTQVHG 143
Query: 134 HVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
+K F D F Q +L++ Y K G+ R +FD++ + +W T+L
Sbjct: 144 LAIKAGFFN---DVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQ 200
Query: 192 XXXXXXLEDADLSL-------------------------EALYLFCDMQMSRRRPNEVTL 226
L+ A++ EA LF MQ+ +PNE T+
Sbjct: 201 ------LDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTI 254
Query: 227 VALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTD 286
V L+ A + LG+LS G W H Y +N L+ F+GTAL+DMYSKCG L A ++FD +
Sbjct: 255 VNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQG 314
Query: 287 RDTFCYNAMI 296
+ +N+MI
Sbjct: 315 KSLATWNSMI 324
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 30/242 (12%)
Query: 8 FNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIP 67
F + ++ L KC ++ ++V +M + T L L++ +S+L S A +F+ +P
Sbjct: 156 FQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVS-NSQLDS--AEIVFNQMP 212
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC--GS---G 122
V + +I+++ + + AF L+ R+ ++PN FT +L +A GS G
Sbjct: 213 MRNVVSWTAMITAYVKNR-RPDEAFQLFRRMQVDD-VKPNEFTIVNLLQASTQLGSLSMG 270
Query: 123 HWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
W +AH F+ D F+ +L++ Y+K G L +R +FD + LATWN++
Sbjct: 271 RWVHD----YAHKNGFV---LDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSM 323
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLF-CDMQMSRRRPNEVTLVALISACSNLGALSQ 241
+ L EAL LF + + P+ +T V ++SAC+N G +
Sbjct: 324 I------------TSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKD 371
Query: 242 GV 243
G+
Sbjct: 372 GL 373
>AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:868468-870279 FORWARD
LENGTH=603
Length = 603
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 160/299 (53%), Gaps = 25/299 (8%)
Query: 1 MKAQNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYC--LSHLLTISSKLAS-T 57
+ QNPI L+ KC+SL L Q+ A + + + ++ L + T S +S +
Sbjct: 27 VNTQNPIL------LISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMS 80
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
YA +F ++ P + ++N++ ++ ++ + + FSL+ IL L P+++TFPSL KA
Sbjct: 81 YARHLFEAMSEPDIVIFNSMARGYSRFTNPLEV-FSLFVEILEDGIL-PDNYTFPSLLKA 138
Query: 118 CCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
C + G LH +K L + +V +L+N Y + + +RC+FD+I EP +
Sbjct: 139 C-AVAKALEEGRQLHCLSMK-LGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV 196
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
+N ++ EAL LF +MQ +PNE+TL++++S+C+ LG
Sbjct: 197 CYNAMITGYARRNRPN------------EALSLFREMQGKYLKPNEITLLSVLSSCALLG 244
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L G W H Y +++ V TAL+DM++KCG L+ A +F+++ +DT ++AMI
Sbjct: 245 SLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMI 303
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 131/290 (45%), Gaps = 39/290 (13%)
Query: 9 NHPILKLLQKC---HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFS 64
N+ LL+ C +L +Q+H + GL + Y L+ + ++ A +F
Sbjct: 129 NYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFD 188
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC--GS- 121
I P V YN +I+ + + ++ + A SL+ R + K L+PN T S+ +C GS
Sbjct: 189 RIVEPCVVCYNAMITGY-ARRNRPNEALSLF-REMQGKYLKPNEITLLSVLSSCALLGSL 246
Query: 122 --GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATW 179
G W H+ K+++ V +L++ +AK G L + +F+++ D W
Sbjct: 247 DLGKWIHKYAKKHS-FCKYVK------VNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAW 299
Query: 180 NTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGAL 239
+ ++ + + +++ +F M+ +P+E+T + L++ACS+ G +
Sbjct: 300 SAMIVAYA------------NHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRV 347
Query: 240 SQGVWTHCYLLRNNLKLN-----RFVGTALVDMYSKCGCLNLACQLFDQL 284
+G Y + K + G+ +VD+ S+ G L A + D+L
Sbjct: 348 EEG---RKYFSQMVSKFGIVPSIKHYGS-MVDLLSRAGNLEDAYEFIDKL 393
>AT4G21065.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11245976-11247763 FORWARD
LENGTH=595
Length = 595
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 156/302 (51%), Gaps = 34/302 (11%)
Query: 12 ILKLLQKC---------HSLNTLKQVHAQMLTTGLA-----LHTYCLSHLLTISSKLAST 57
+L +++KC S+ L+Q+HA + G++ L + + +L+++ S +
Sbjct: 11 LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMS 70
Query: 58 YALTIFSSIPNP-TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFK 116
YA +FS I P VF++NTLI + + I AFSLY + ++P++ T+P L K
Sbjct: 71 YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSIS-AFSLYREMRVSGLVEPDTHTYPFLIK 129
Query: 117 ACCGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
A + G +H+ V++ F Y VQ SLL+ YA G + + +FD++ E
Sbjct: 130 AVTTMAD-VRLGETIHSVVIRSGFGSLIY---VQNSLLHLYANCGDVASAYKVFDKMPEK 185
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
DL WN+++ + EAL L+ +M +P+ T+V+L+SAC+
Sbjct: 186 DLVAWNSVING------------FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACA 233
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNA 294
+GAL+ G H Y+++ L N L+D+Y++CG + A LFD++ D+++ + +
Sbjct: 234 KIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTS 293
Query: 295 MI 296
+I
Sbjct: 294 LI 295
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 121/265 (45%), Gaps = 25/265 (9%)
Query: 26 KQVHAQMLTTGLALHTYC---LSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFT 82
+ +H+ ++ +G Y L HL +AS Y +F +P + +N++I+ F
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY--KVFDKMPEKDLVAWNSVINGF- 197
Query: 83 SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPP 142
+ + + A +LY + K ++P+ FT SL AC G G +H +++K
Sbjct: 198 AENGKPEEALALYTE-MNSKGIKPDGFTIVSLLSACAKIGA-LTLGKRVHVYMIKVGLTR 255
Query: 143 YDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDAD 202
H LL+ YA+ GR+ ++ LFD++ + + +W +L+ L
Sbjct: 256 NLHSSNV-LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG------------LAVNG 302
Query: 203 LSLEALYLFCDMQMSRRR-PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
EA+ LF M+ + P E+T V ++ ACS+ G + +G + + +R K+ +
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG-FEYFRRMREEYKIEPRIE 361
Query: 262 --TALVDMYSKCGCLNLACQLFDQL 284
+VD+ ++ G + A + +
Sbjct: 362 HFGCMVDLLARAGQVKKAYEYIKSM 386
>AT4G37380.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:17572040-17573938 REVERSE
LENGTH=632
Length = 632
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 54/317 (17%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS----TYALTIFSSIPNPT 70
L+ K S++ + Q+HA +L L LH L + AS ++L +F +P
Sbjct: 35 LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+FL+ I++ + + + AF LY ++L+ + + PN FTF SL K+C + G
Sbjct: 95 LFLFTAAINTASINGLKDQ-AFLLYVQLLSSE-INPNEFTFSSLLKSCS-----TKSGKL 147
Query: 131 LHAHVLKF---LEP---------------------PYDHFVQASLLNF------YAKYGR 160
+H HVLKF ++P +D + SL++ YAK G
Sbjct: 148 IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGN 207
Query: 161 LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM-QMSRR 219
+ +R LFD + E D+ +WN ++ +AL LF + +
Sbjct: 208 VEAARALFDSMCERDIVSWNVMIDGYAQH------------GFPNDALMLFQKLLAEGKP 255
Query: 220 RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQ 279
+P+E+T+VA +SACS +GAL G W H ++ + ++LN V T L+DMYSKCG L A
Sbjct: 256 KPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVL 315
Query: 280 LFDQLTDRDTFCYNAMI 296
+F+ +D +NAMI
Sbjct: 316 VFNDTPRKDIVAWNAMI 332
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 131/320 (40%), Gaps = 55/320 (17%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSK-------------------LA 55
LL+ C S + K +H +L GL + Y + L+ + +K ++
Sbjct: 136 LLKSC-STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVS 194
Query: 56 STYALT-------------IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHK 102
ST +T +F S+ + +N +I + H + A L+ ++LA
Sbjct: 195 STAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFP-NDALMLFQKLLAEG 253
Query: 103 TLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLC 162
+P+ T + AC G + G +H V K + V L++ Y+K G L
Sbjct: 254 KPKPDEITVVAALSACSQIGA-LETGRWIHVFV-KSSRIRLNVKVCTGLIDMYSKCGSLE 311
Query: 163 VSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQ-MSRRRP 221
+ +F+ D+ WN ++ S +AL LF +MQ ++ +P
Sbjct: 312 EAVLVFNDTPRKDIVAWNAMIAGYAMH------------GYSQDALRLFNEMQGITGLQP 359
Query: 222 NEVTLVALISACSNLGALSQGVWTHCYLLRN---NLKLNRFVGTALVDMYSKCGCLNLAC 278
++T + + AC++ G +++G+ + + K+ + LV + + G L A
Sbjct: 360 TDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHY--GCLVSLLGRAGQLKRAY 417
Query: 279 QLFDQLT-DRDTFCYNAMIG 297
+ + D D+ +++++G
Sbjct: 418 ETIKNMNMDADSVLWSSVLG 437
>AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:21255731-21258403 REVERSE
LENGTH=890
Length = 890
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 141/292 (48%), Gaps = 39/292 (13%)
Query: 29 HAQMLTTGLALHTYCLSHLLT-----ISSKLASTY--------ALTIFSSIPNPTVFLYN 75
H +ML TG LH Y L + + S L Y +F + + + L+N
Sbjct: 314 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWN 373
Query: 76 TLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHV 135
+I+ + S + A L+ + L NS T + AC SG F +H V
Sbjct: 374 AMIAGY-SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA-FSRKEAIHGFV 431
Query: 136 LKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXX 195
+K D FVQ +L++ Y++ G++ ++ +F ++ + DL TWNT++
Sbjct: 432 VK-RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF------- 483
Query: 196 XXLEDADLSLEALYLFCDMQMSRRR-----------PNEVTLVALISACSNLGALSQGVW 244
++ +AL L MQ R+ PN +TL+ ++ +C+ L AL++G
Sbjct: 484 -----SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE 538
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H Y ++NNL + VG+ALVDMY+KCGCL ++ ++FDQ+ ++ +N +I
Sbjct: 539 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVII 590
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 21/290 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSH-LLTISSKLASTYAL-TIFSSIPNP 69
+LK + + KQ+HA + G + + +++ L+ + K A+ +F I
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG--SGHWFQY 127
+N+LISS S + +A + R + + ++P+SFT S+ AC
Sbjct: 163 NQVSWNSLISSLCSFE-KWEMALEAF-RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 220
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G +HA+ L+ E + F+ +L+ Y K G+L S+ L DL TWNT+L
Sbjct: 221 GKQVHAYGLRKGE--LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS-- 276
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
L + LEAL +M + P+E T+ +++ ACS+L L G H
Sbjct: 277 ----------LCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326
Query: 248 YLLRN-NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
Y L+N +L N FVG+ALVDMY C + ++FD + DR +NAMI
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMI 376
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 127/271 (46%), Gaps = 27/271 (9%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISS--FT 82
+ +H ++ GL + + L+ + S+L A+ IF + + + +NT+I+ F+
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484
Query: 83 SHSSQ----IHLAFSLYNRI---LAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHV 135
H +H +L ++ + +L+PNS T ++ +C G +HA+
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSA-LAKGKEIHAYA 543
Query: 136 LKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXX 195
+K D V ++L++ YAK G L +SR +FDQI + ++ TWN ++
Sbjct: 544 IKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ-- 600
Query: 196 XXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLK 255
EA+ L M + +PNEVT +++ +ACS+ G + +G+ Y+++ +
Sbjct: 601 ----------EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYG 649
Query: 256 LNRFVG--TALVDMYSKCGCLNLACQLFDQL 284
+ +VD+ + G + A QL + +
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMM 680
>AT5G06540.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:1999181-2001049 REVERSE
LENGTH=622
Length = 622
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 156/316 (49%), Gaps = 31/316 (9%)
Query: 8 FNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS--------TYA 59
F HP L LLQ C S + LK +H +L T L + S LL + ++ YA
Sbjct: 11 FKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYA 70
Query: 60 LTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC 119
IFS I NP +F++N LI F++ ++ AF Y ++L + + P++ TFP L KA
Sbjct: 71 YGIFSQIQNPNLFVFNLLIRCFST-GAEPSKAFGFYTQMLKSR-IWPDNITFPFLIKASS 128
Query: 120 GSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATW 179
G H+ +++F D +V+ SL++ YA G + + +F Q+ D+ +W
Sbjct: 129 -EMECVLVGEQTHSQIVRF-GFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186
Query: 180 NTLLXXXXXXXXXXXXXXLEDA-------------------DLSLEALYLFCDMQMSRRR 220
+++ + D + +A+ LF M+
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246
Query: 221 PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
NE +V++IS+C++LGAL G + Y++++++ +N +GTALVDM+ +CG + A +
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHV 306
Query: 281 FDQLTDRDTFCYNAMI 296
F+ L + D+ ++++I
Sbjct: 307 FEGLPETDSLSWSSII 322
>AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:12712884-12715100 FORWARD
LENGTH=738
Length = 738
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 136/287 (47%), Gaps = 18/287 (6%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTIS--SKLAS-TYALTIFSSIPNP 69
+ L+++C SL LKQ H M+ TG Y S L ++ S AS YA +F IP P
Sbjct: 34 ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
F +NTLI ++ S + L+ + +++ PN +TFP L KA G
Sbjct: 94 NSFAWNTLIRAYASGPDPV-LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSS-LSLGQ 151
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
LH +K D FV SL++ Y G L + +F I E D+ +WN+++
Sbjct: 152 SLHGMAVKSA-VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 210
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
+AL LF M+ + + VT+V ++SAC+ + L G Y+
Sbjct: 211 GSPD------------KALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI 258
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
N + +N + A++DMY+KCG + A +LFD + ++D + M+
Sbjct: 259 EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 305
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 126/262 (48%), Gaps = 30/262 (11%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F++I V +N++I+ F S A L+ + + + ++ + T + AC
Sbjct: 185 ACKVFTTIKEKDVVSWNSMINGFVQKGSP-DKALELFKK-MESEDVKASHVTMVGVLSAC 242
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHF---VQASLLNFYAKYGRLCVSRCLFDQISEPD 175
+ ++G V ++E + + ++L+ Y K G + ++ LFD + E D
Sbjct: 243 AKIRN-LEFG----RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 297
Query: 176 LATWNTLLXXXXXXXXXXXXXXL-------------------EDADLSLEALYLFCDMQM 216
TW T+L + E EAL +F ++Q+
Sbjct: 298 NVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL 357
Query: 217 SRR-RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLN 275
+ + N++TLV+ +SAC+ +GAL G W H Y+ ++ +++N V +AL+ MYSKCG L
Sbjct: 358 QKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLE 417
Query: 276 LACQLFDQLTDRDTFCYNAMIG 297
+ ++F+ + RD F ++AMIG
Sbjct: 418 KSREVFNSVEKRDVFVWSAMIG 439
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 102/231 (44%), Gaps = 18/231 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTV 71
+L + KC S+ K++ M T L IS + A + +S+P +
Sbjct: 273 MLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY-AISEDYEA--AREVLNSMPQKDI 329
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
+N LIS++ + + + A +++ + K ++ N T S AC G + G +
Sbjct: 330 VAWNALISAY-EQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGA-LELGRWI 387
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
H+++ K + V ++L++ Y+K G L SR +F+ + + D+ W+ ++
Sbjct: 388 HSYIKKH-GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGG------ 440
Query: 192 XXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
L EA+ +F MQ + +PN VT + ACS+ G + +
Sbjct: 441 ------LAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 485
>AT5G27110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:9538572-9540647 REVERSE
LENGTH=691
Length = 691
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 147/294 (50%), Gaps = 25/294 (8%)
Query: 11 PILKLLQKC----HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSS 65
+L LL++C SL +K VH ++LT GL L+ + A +F +
Sbjct: 5 KLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFEN 64
Query: 66 IP-NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
V+++N+L+S + S +S H ++ R+L P+SFTFP++ KA G
Sbjct: 65 FDIRSDVYIWNSLMSGY-SKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGRE 123
Query: 125 FQYGPPLHAHVLKFLEPPY--DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
F G +H V+K Y D V +SL+ YAK+ S +FD++ E D+A+WNT+
Sbjct: 124 F-LGRMIHTLVVK---SGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTV 179
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ + + +AL LF M+ S PN V+L ISACS L L +G
Sbjct: 180 ISC------------FYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERG 227
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++ +L+ +V +ALVDMY KC CL +A ++F ++ + +N+MI
Sbjct: 228 KEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMI 281
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 126/276 (45%), Gaps = 17/276 (6%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISS 80
L K++H + + G L Y S L+ + K A +F +P ++ +N++I
Sbjct: 224 LERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKG 283
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
+ + + NR++ T +P+ T S+ AC S + +G +H +V++ +
Sbjct: 284 YVAKGDS-KSCVEILNRMIIEGT-RPSQTTLTSILMACSRSRNLL-HGKFIHGYVIRSVV 340
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
D +V SL++ Y K G ++ +F + + +WN ++
Sbjct: 341 NA-DIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNW-------- 391
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
+A+ ++ M +P+ VT +++ ACS L AL +G H + + L+ + +
Sbjct: 392 ----FKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELL 447
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+AL+DMYSKCG A ++F+ + +D + MI
Sbjct: 448 LSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMI 483
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A T+FS +N +ISS+ S + A +Y+++++ ++P+ TF S+ AC
Sbjct: 363 AETVFSKTQKDVAESWNVMISSYISVGNWFK-AVEVYDQMVS-VGVKPDVVTFTSVLPAC 420
Query: 119 CGSGHWFQYGPPLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
+ G +H + + LE D + ++LL+ Y+K G + +F+ I + D+
Sbjct: 421 SQLAA-LEKGKQIHLSISESRLET--DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVV 477
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
+W ++ EALY F +MQ +P+ VTL+A++SAC + G
Sbjct: 478 SWTVMISAYGSHGQPR------------EALYQFDEMQKFGLKPDGVTLLAVLSACGHAG 525
Query: 238 ALSQGV 243
+ +G+
Sbjct: 526 LIDEGL 531
>AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor 22 |
chr3:4057027-4059193 REVERSE LENGTH=694
Length = 694
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 141/275 (51%), Gaps = 19/275 (6%)
Query: 25 LKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTS 83
LKQ+HA++L GL + ++ L+ SS T+A +F +P P +F +N +I + S
Sbjct: 37 LKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY-S 95
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
++ A +Y+ + + + P+SFTFP L KAC G H Q G +HA V + L
Sbjct: 96 RNNHFQDALLMYSNMQLAR-VSPDSFTFPHLLKACSGLSH-LQMGRFVHAQVFR-LGFDA 152
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPD--LATWNTLLXXXXXXXXXXXXXXLEDA 201
D FVQ L+ YAK RL +R +F+ + P+ + +W ++
Sbjct: 153 DVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE---------- 202
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
+EAL +F M+ +P+ V LV++++A + L L QG H +++ L++ +
Sbjct: 203 --PMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLL 260
Query: 262 TALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L MY+KCG + A LFD++ + +NAMI
Sbjct: 261 ISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMI 295
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 146/291 (50%), Gaps = 28/291 (9%)
Query: 15 LLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNP- 69
LL+ C L+ L+ VHAQ+ G + + L+ + +K A T+F +P P
Sbjct: 125 LLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPE 184
Query: 70 -TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA--CCGSGHWFQ 126
T+ + ++S++ + + A ++++ + ++P+ S+ A C +
Sbjct: 185 RTIVSWTAIVSAYAQNGEPME-ALEIFSQ-MRKMDVKPDWVALVSVLNAFTCLQD---LK 239
Query: 127 YGPPLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
G +HA V+K LE D + SL YAK G++ ++ LFD++ P+L WN ++
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
+ EA+ +F +M RP+ +++ + ISAC+ +G+L Q
Sbjct: 298 YAKN------------GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSM 345
Query: 246 HCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ Y+ R++ + + F+ +AL+DM++KCG + A +FD+ DRD ++AMI
Sbjct: 346 YEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMI 396
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 125/264 (47%), Gaps = 20/264 (7%)
Query: 22 LNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTL 77
L LKQ +HA ++ GL + L L T+ +K A +F + +P + L+N +
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAM 294
Query: 78 ISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK 137
IS + + + A +++ ++ +K ++P++ + S AC G + ++ +V +
Sbjct: 295 ISGY-AKNGYAREAIDMFHEMI-NKDVRPDTISITSAISACAQVGS-LEQARSMYEYVGR 351
Query: 138 FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXX 197
+ D F+ ++L++ +AK G + +R +FD+ + D+ W+ ++
Sbjct: 352 S-DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGR------ 404
Query: 198 LEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLN 257
+ EA+ L+ M+ PN+VT + L+ AC++ G + +G W + + +
Sbjct: 405 ------AREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQ 458
Query: 258 RFVGTALVDMYSKCGCLNLACQLF 281
+ ++D+ + G L+ A ++
Sbjct: 459 QQHYACVIDLLGRAGHLDQAYEVI 482
>AT1G31430.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:11254025-11255737 REVERSE
LENGTH=570
Length = 570
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 144/305 (47%), Gaps = 24/305 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYAL-TIFSSIPNPT 70
+LK + + + ++VH + GL +Y + L+ + + L +F +P
Sbjct: 52 VLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRD 111
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +N LISS+ + + A ++ R+ L+ + T S AC + + G
Sbjct: 112 VVSWNGLISSYVGNG-RFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKN-LEIGER 169
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
++ V+ E + +L++ + K G L +R +FD + + ++ W +++
Sbjct: 170 IYRFVVTEFEMSVR--IGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTG 227
Query: 191 XXXXXXXLED----ADLSL---------------EALYLFCDMQMSRRRPNEVTLVALIS 231
L + D+ L EAL LF MQ + RP+ LV+L++
Sbjct: 228 RIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLT 287
Query: 232 ACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
C+ GAL QG W H Y+ N + +++ VGTALVDMY+KCGC+ A ++F ++ +RDT
Sbjct: 288 GCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTAS 347
Query: 292 YNAMI 296
+ ++I
Sbjct: 348 WTSLI 352
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 20/236 (8%)
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
S + P++ +YN ++ S S + +L+ L + L P++FT P + K+ G
Sbjct: 3 MSLLQTPSLLMYNKMLKSLADGKSFTKV-LALFGE-LRGQGLYPDNFTLPVVLKSI-GRL 59
Query: 123 HWFQYGPPLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
G +H + +K LE +D +V SL+ YA G++ ++ +FD++ + D+ +WN
Sbjct: 60 RKVIEGEKVHGYAVKAGLE--FDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNG 117
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALS 240
L+ EDA + +F M Q S + +E T+V+ +SACS L L
Sbjct: 118 LISSYVGNGR------FEDA------IGVFKRMSQESNLKFDEGTIVSTLSACSALKNLE 165
Query: 241 QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G + +++ +++ +G ALVDM+ KCGCL+ A +FD + D++ C+ +M+
Sbjct: 166 IGERIYRFVV-TEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMV 220
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 109/227 (48%), Gaps = 17/227 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F P V L+ +++ + + + A L+ R + ++P++F SL C
Sbjct: 232 ARVLFERSPVKDVVLWTAMMNGYVQFN-RFDEALELF-RCMQTAGIRPDNFVLVSLLTGC 289
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
+G + G +H ++ + D V +L++ YAK G + + +F +I E D A+
Sbjct: 290 AQTGA-LEQGKWIHGYINEN-RVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTAS 347
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
W +L+ L +S AL L+ +M+ R + +T VA+++AC++ G
Sbjct: 348 WTSLI------------YGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGF 395
Query: 239 LSQGVWT-HCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+++G H R+N++ + L+D+ + G L+ A +L D++
Sbjct: 396 VAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKM 442
>AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:15405068-15406573 REVERSE
LENGTH=501
Length = 501
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 151/293 (51%), Gaps = 25/293 (8%)
Query: 9 NHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISS-----KLASTYALTIF 63
H L L+ C S+ L Q+H Q+ + L ++ +S L+ +SS LA L +
Sbjct: 13 KHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLH 72
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGH 123
SS P+ +N L ++S S + + +Y+ + + ++PN TFP L KAC S
Sbjct: 73 SSDSTPST--WNMLSRGYSSSDSPVE-SIWVYSE-MKRRGIKPNKLTFPFLLKAC-ASFL 127
Query: 124 WFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
G + VLK +D +V +L++ Y + +R +FD+++E ++ +WN+++
Sbjct: 128 GLTAGRQIQVEVLKH-GFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIM 186
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
+E+ L+L FC+M R P+E T+V L+SAC G LS G
Sbjct: 187 TAL-----------VENGKLNL-VFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGK 232
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++ L+LN +GTALVDMY+K G L A +F+++ D++ + ++AMI
Sbjct: 233 LVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMI 285
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 125/276 (45%), Gaps = 24/276 (8%)
Query: 15 LLQKCHS---LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
LL+ C S L +Q+ ++L G Y ++L+ + T A +F +
Sbjct: 119 LLKACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERN 178
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +N+++++ + +++L F + ++ K P+ T L AC G+ G
Sbjct: 179 VVSWNSIMTALV-ENGKLNLVFECFCEMIG-KRFCPDETTMVVLLSACGGN---LSLGKL 233
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
+H+ V+ E + + +L++ YAK G L +R +F+++ + ++ TW+ ++
Sbjct: 234 VHSQVM-VRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVG----- 287
Query: 191 XXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGV-WTHCY 248
L + EAL LF M + S RPN VT + ++ ACS+ G + G + H
Sbjct: 288 -------LAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEM 340
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+ +K A+VD+ + G LN A ++
Sbjct: 341 EKIHKIKPMMIHYGAMVDILGRAGRLNEAYDFIKKM 376
>AT4G14820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:8507794-8510038 REVERSE
LENGTH=722
Length = 722
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 150/288 (52%), Gaps = 20/288 (6%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGL--ALHTYCLSHLLTISSKLASTYALTIFSSIPN- 68
IL+ L C SLN +KQ+HA +L T + L+++ L +L SS + +YAL +FSSIP+
Sbjct: 15 ILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF-LFNLSVSSSSINLSYALNVFSSIPSP 73
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
P ++N + S SS+ Y RI H + + F+F + KA F+ G
Sbjct: 74 PESIVFNPFLRDL-SRSSEPRATILFYQRI-RHVGGRLDQFSFLPILKAVSKVSALFE-G 130
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
LH K + D FV+ ++ YA GR+ +R +FD++S D+ TWNT++
Sbjct: 131 MELHGVAFK-IATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCR 189
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
L EA LF +M+ S P+E+ L ++SAC G + + +
Sbjct: 190 F------------GLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEF 237
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L+ N+++++ + TALV MY+ GC+++A + F +++ R+ F AM+
Sbjct: 238 LIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMV 285
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 138/316 (43%), Gaps = 44/316 (13%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNP 69
PILK + K +L ++H + + + + + YA +F + +
Sbjct: 116 PILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHR 175
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW----- 124
V +NT+I + + AF L+ + + P+ ++ AC +G+
Sbjct: 176 DVVTWNTMIERYCRFG-LVDEAFKLFEE-MKDSNVMPDEMILCNIVSACGRTGNMRYNRA 233
Query: 125 -----FQYGPPLHAHVLKFLEPPY-------------------DHFVQASLLNFYAKYGR 160
+ + H+L L Y + FV ++++ Y+K GR
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293
Query: 161 LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRR 220
L ++ +FDQ + DL W T++ ++D EAL +F +M S +
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYV------------ESDYPQEALRVFEEMCCSGIK 341
Query: 221 PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
P+ V++ ++ISAC+NLG L + W H + N L+ + AL++MY+KCG L+ +
Sbjct: 342 PDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDV 401
Query: 281 FDQLTDRDTFCYNAMI 296
F+++ R+ +++MI
Sbjct: 402 FEKMPRRNVVSWSSMI 417
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 26/204 (12%)
Query: 48 LTISSKLASTY--------ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRIL 99
L +S+ + S Y A IF + + T+IS++ S A ++ +
Sbjct: 278 LFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYV-ESDYPQEALRVFEEMC 336
Query: 100 AHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHV-LKFLEPPYDHFVQASLLNFYAKY 158
++P+ + S+ AC G +H+ + + LE + +L+N YAK
Sbjct: 337 C-SGIKPDVVSMFSVISACANLG-ILDKAKWVHSCIHVNGLESELS--INNALINMYAKC 392
Query: 159 GRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSR 218
G L +R +F+++ ++ +W++++ +AL LF M+
Sbjct: 393 GGLDATRDVFEKMPRRNVVSWSSMINALSMHGEAS------------DALSLFARMKQEN 440
Query: 219 RRPNEVTLVALISACSNLGALSQG 242
PNEVT V ++ CS+ G + +G
Sbjct: 441 VEPNEVTFVGVLYGCSHSGLVEEG 464
>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:3791454-3793883 REVERSE
LENGTH=809
Length = 809
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 144/291 (49%), Gaps = 17/291 (5%)
Query: 7 IFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSS 65
++ HP LL++C SL L+Q+ + GL + + L+++ + S A +F
Sbjct: 35 VYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEP 94
Query: 66 IPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF 125
I + LY+T++ F + S + A + R + + ++P + F L K C G
Sbjct: 95 IDSKLNVLYHTMLKGF-AKVSDLDKALQFFVR-MRYDDVEPVVYNFTYLLKVC-GDEAEL 151
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
+ G +H ++K D F L N YAK ++ +R +FD++ E DL +WNT++
Sbjct: 152 RVGKEIHGLLVKS-GFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAG 210
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
A ++LE + C+ + +P+ +T+V+++ A S L +S G
Sbjct: 211 YSQNGM---------ARMALEMVKSMCEENL---KPSFITIVSVLPAVSALRLISVGKEI 258
Query: 246 HCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H Y +R+ + TALVDMY+KCG L A QLFD + +R+ +N+MI
Sbjct: 259 HGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMI 309
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 126/278 (45%), Gaps = 28/278 (10%)
Query: 31 QMLTTGLALHTYCL----SHLLTISSKLASTYA--------LTIFSSIPNPTVFLYNTLI 78
++++ G +H Y + L+ IS+ L YA +F + V +N++I
Sbjct: 250 RLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMI 309
Query: 79 SSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF 138
++ + + A ++ ++L + ++P + AC G + G +H ++
Sbjct: 310 DAYVQNENPKE-AMLIFQKML-DEGVKPTDVSVMGALHACADLGD-LERGRFIHKLSVE- 365
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
L + V SL++ Y K + + +F ++ L +WN ++
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILG------------F 413
Query: 199 EDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNR 258
++AL F M+ +P+ T V++I+A + L W H ++R+ L N
Sbjct: 414 AQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNV 473
Query: 259 FVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
FV TALVDMY+KCG + +A +FD +++R +NAMI
Sbjct: 474 FVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 142/294 (48%), Gaps = 26/294 (8%)
Query: 12 ILKLLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIP 67
++ L C L L++ +H + GL + ++ L+++ K A ++F +
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
+ T+ +N +I F + I A + ++++ + +T++P++FT+ S+ A +
Sbjct: 400 SRTLVSWNAMILGFAQNGRPID-ALNYFSQMRS-RTVKPDTFTYVSVITAIA-ELSITHH 456
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
+H V++ + FV +L++ YAK G + ++R +FD +SE + TWN ++
Sbjct: 457 AKWIHGVVMRSCLDK-NVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
AL LF +MQ +PN VT +++ISACS+ G + G+ C
Sbjct: 516 TH------------GFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGL--KC 561
Query: 248 -YLLRNN--LKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTF-CYNAMIG 297
Y+++ N ++L+ A+VD+ + G LN A Q+ + Y AM+G
Sbjct: 562 FYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLG 615
>AT4G39530.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:18374736-18377240 REVERSE
LENGTH=834
Length = 834
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 41/298 (13%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+L C SL+ L QVHA + L +Y + L+ + +K T A +F
Sbjct: 356 ILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAAD 415
Query: 71 VFLYNTLISSFTSHSSQ--IHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG-------- 120
V L+N +I ++ +Q +H A +++ R + + ++P+ TF SL +A
Sbjct: 416 VVLFNAMIEGYSRLGTQWELHEALNIF-RDMRFRLIRPSLLTFVSLLRASASLTSLGLSK 474
Query: 121 --SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G F+YG L D F ++L++ Y+ L SR +FD++ DL
Sbjct: 475 QIHGLMFKYGLNL------------DIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVI 522
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WN++ EAL LF ++Q+SR RP+E T +++A NL +
Sbjct: 523 WNSMFAGYVQQSENE------------EALNLFLELQLSRERPDEFTFANMVTAAGNLAS 570
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ G HC LL+ L+ N ++ AL+DMY+KCG A + FD RD C+N++I
Sbjct: 571 VQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVI 628
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 24/288 (8%)
Query: 16 LQKCHSLNTLK-----QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNP 69
+Q C L+ Q+ + ++ +G Y + L+ K + YA +F ++P
Sbjct: 153 IQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEK 212
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
+ + T+IS +++ L+ +++ + P+ + ++ AC + + G
Sbjct: 213 STVTWTTMISGCVKMGRS-YVSLQLFYQLMEDNVV-PDGYILSTVLSACS-ILPFLEGGK 269
Query: 130 PLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+HAH+L++ LE D + L++ Y K GR+ + LF+ + ++ +W TLL
Sbjct: 270 QIHAHILRYGLE--MDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQ 327
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
L EA+ LF M +P+ +++++C++L AL G H Y
Sbjct: 328 NA------------LHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAY 375
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ NL + +V +L+DMY+KC CL A ++FD D +NAMI
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMI 423
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHSS 86
VH Q++ GL L TY + L+ + S+ YA +F +P + ++T++S+ +H
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSA-CNHHG 124
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC---GSGHWFQYGPPLHAHVLKFLEPPY 143
+ ++ + PN + S +AC G G W + L + ++K
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVF--QLQSFLVKS-GFDR 181
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D +V L++FY K G + +R +FD + E TW T++
Sbjct: 182 DVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGR------------ 229
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
S +L LF + P+ L ++SACS L L G H ++LR L+++ +
Sbjct: 230 SYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNV 289
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L+D Y KCG + A +LF+ + +++ + ++
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLL 322
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 123/281 (43%), Gaps = 30/281 (10%)
Query: 13 LKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALT----IFSS 65
+ LL+ SL +L KQ+H M GL L + S L+ + S + Y L +F
Sbjct: 458 VSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYS---NCYCLKDSRLVFDE 514
Query: 66 IPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF 125
+ + ++N++ + + S A +L+ + + +P+ FTF ++ A G+
Sbjct: 515 MKVKDLVIWNSMFAGYVQQSEN-EEALNLFLELQLSRE-RPDEFTFANMVTAA-GNLASV 571
Query: 126 QYGPPLHAHVLK-FLE-PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
Q G H +LK LE PY + +LL+ YAK G + FD + D+ WN+++
Sbjct: 572 QLGQEFHCQLLKRGLECNPY---ITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVI 628
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
+AL + M PN +T V ++SACS+ G + G+
Sbjct: 629 SSYANHGEGK------------KALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGL 676
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+LR ++ +V + + G LN A +L +++
Sbjct: 677 KQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKM 717
>AT1G69350.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26069882-26072245 FORWARD
LENGTH=787
Length = 787
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 18/221 (8%)
Query: 61 TIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG 120
T+ + + + +N+LIS + +H + A L+ +++ + ++P++FT S AC
Sbjct: 360 TVLRVVSDRNIVAWNSLISLY-AHRGMVIQALGLFRQMVTQR-IKPDAFTLASSISACEN 417
Query: 121 SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
+G G +H HV++ D FVQ SL++ Y+K G + + +F+QI + TWN
Sbjct: 418 AG-LVPLGKQIHGHVIR--TDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWN 474
Query: 181 TLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS 240
++L S+EA+ LF M S NEVT +A+I ACS++G+L
Sbjct: 475 SMLCGFSQNGN------------SVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLE 522
Query: 241 QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLF 281
+G W H L+ + LK + F TAL+DMY+KCG LN A +F
Sbjct: 523 KGKWVHHKLIISGLK-DLFTDTALIDMYAKCGDLNAAETVF 562
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 31/293 (10%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALT--------IFS 64
+ L + C SL + Q+HA +L TG L +KL +YA +F
Sbjct: 5 MPLFRSCSSLRLVSQLHAHLLVTGR------LRRDPLPVTKLIESYAFMGSPDSSRLVFE 58
Query: 65 SIPNPTVFLYNTLIS-SFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGH 123
+ P P F+Y LI + H + A LY+R+++ +T Q + F FPS+ +AC GS
Sbjct: 59 AFPYPDSFMYGVLIKCNVWCH--LLDAAIDLYHRLVS-ETTQISKFVFPSVLRACAGSRE 115
Query: 124 WFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
G +H ++K D ++ SLL Y + G L + +FD + DL W+TL+
Sbjct: 116 HLSVGGKVHGRIIKG-GVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLV 174
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
LE+ ++ ++AL +F M P+ VT+++++ C+ LG L
Sbjct: 175 SSC-----------LENGEV-VKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIAR 222
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H + R L+ + +L+ MYSKCG L + ++F+++ ++ + AMI
Sbjct: 223 SVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMI 275
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 132/277 (47%), Gaps = 18/277 (6%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISS 80
L+ +VH +++ G+ + LL + + + + A +F +P + ++TL+SS
Sbjct: 117 LSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSS 176
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
+ + A ++ + + ++P++ T S+ + C G + +H + + +
Sbjct: 177 CLENGEVVK-ALRMF-KCMVDDGVEPDAVTMISVVEGCAELG-CLRIARSVHGQITRKM- 232
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
D + SLL Y+K G L S +F++I++ + +W ++
Sbjct: 233 FDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNR------------ 280
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLN-RF 259
+ S +AL F +M S PN VTL +++S+C +G + +G H + +R L N
Sbjct: 281 GEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYES 340
Query: 260 VGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ ALV++Y++CG L+ + ++DR+ +N++I
Sbjct: 341 LSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLI 377
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 121/260 (46%), Gaps = 19/260 (7%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFLYNTLISSFTSH 84
KQ+H ++ T ++ + + L+ + SK S A T+F+ I + +V +N+++ F+ +
Sbjct: 425 KQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQN 483
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ + A SL++ + H L+ N TF ++ +AC G + G +H ++ + D
Sbjct: 484 GNSVE-AISLFD-YMYHSYLEMNEVTFLAVIQACSSIGS-LEKGKWVHHKLI--ISGLKD 538
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
F +L++ YAK G L + +F +S + +W++++
Sbjct: 539 LFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGS---------- 588
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
A+ F M S +PNEV + ++SAC + G++ +G + + + N
Sbjct: 589 --AISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPNSEHFACF 646
Query: 265 VDMYSKCGCLNLACQLFDQL 284
+D+ S+ G L A + ++
Sbjct: 647 IDLLSRSGDLKEAYRTIKEM 666
>AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:1867129-1873194
REVERSE LENGTH=1322
Length = 1322
Score = 119 bits (298), Expect = 3e-27, Method: Composition-based stats.
Identities = 93/334 (27%), Positives = 150/334 (44%), Gaps = 57/334 (17%)
Query: 14 KLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVF 72
K++++C + L+ A M+ T L ++ +T + A++ + + P VF
Sbjct: 778 KIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVF 837
Query: 73 LYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLH 132
+YN L F + S I + LY R+L ++ P+S+T+ SL KA S ++G L
Sbjct: 838 VYNALFKGFVTCSHPIR-SLELYVRML-RDSVSPSSYTYSSLVKA---SSFASRFGESLQ 892
Query: 133 AHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFD----------------------- 169
AH+ KF + +Q +L++FY+ GR+ +R +FD
Sbjct: 893 AHIWKF-GFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDM 951
Query: 170 --------QISEPDLATWNTLLXXXXXXXXXXXXXXL-------------------EDAD 202
Q+SE + AT N L+ L
Sbjct: 952 DSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNK 1011
Query: 203 LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
EA+ +F M P+EVT+ +ISAC++LG L G H Y L+N L+ ++G+
Sbjct: 1012 RYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGS 1071
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
ALVDMYSKCG L A +F L ++ FC+N++I
Sbjct: 1072 ALVDMYSKCGSLERALLVFFNLPKKNLFCWNSII 1105
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A ++F+ +P + + T+I + S + + A +++ +++ + P+ T ++ AC
Sbjct: 985 AESLFNQMPVKDIISWTTMIKGY-SQNKRYREAIAVFYKMMEEGII-PDEVTMSTVISAC 1042
Query: 119 CGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
G + G +H + L+ F+ D ++ ++L++ Y+K G L + +F + + +L
Sbjct: 1043 AHLG-VLEIGKEVHMYTLQNGFV---LDVYIGSALVDMYSKCGSLERALLVFFNLPKKNL 1098
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
WN+++ L + EAL +F M+M +PN VT V++ +AC++
Sbjct: 1099 FCWNSIIEG------------LAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHA 1146
Query: 237 GALSQG 242
G + +G
Sbjct: 1147 GLVDEG 1152
>AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor 19 |
chr3:1493684-1495381 REVERSE LENGTH=565
Length = 565
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 141/298 (47%), Gaps = 28/298 (9%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLL----TISSKLASTYALTIFSSI 66
PIL L+ C SL L Q+H M+ + + + LS L+ T + +YA ++F SI
Sbjct: 8 PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67
Query: 67 PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQ 126
P+V+++N++I + S+S A Y +L K P+ FTFP + KAC G Q
Sbjct: 68 DCPSVYIWNSMIRGY-SNSPNPDKALIFYQEML-RKGYSPDYFTFPYVLKACSGLRD-IQ 124
Query: 127 YGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXX 186
+G +H V+K + +V LL+ Y G + +F+ I + ++ W +L+
Sbjct: 125 FGSCVHGFVVK-TGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGF 183
Query: 187 XXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTH 246
+A+ F +MQ + + NE +V L+ AC + G W H
Sbjct: 184 VNNNRFS------------DAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFH 231
Query: 247 CYL--------LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L ++ + N + T+L+DMY+KCG L A LFD + +R +N++I
Sbjct: 232 GFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSII 289
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 131/302 (43%), Gaps = 44/302 (14%)
Query: 15 LLQKCHSLNTLKQ---VHAQMLTTGLALHTY---CLSHLLTISSKLASTYALTIFSSIPN 68
+L+ C L ++ VH ++ TG ++ Y CL H+ ++ Y L +F IP
Sbjct: 113 VLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEV--NYGLRVFEDIPQ 170
Query: 69 PTVFLYNTLISSFTSHS--SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG-----S 121
V + +LIS F +++ S AF R + ++ N L AC +
Sbjct: 171 WNVVAWGSLISGFVNNNRFSDAIEAF----REMQSNGVKANETIMVDLLVACGRCKDIVT 226
Query: 122 GHWFQ-------YGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
G WF + P + V ++ + SL++ YAK G L +R LFD + E
Sbjct: 227 GKWFHGFLQGLGFDPYFQSKV------GFNVILATSLIDMYAKCGDLRTARYLFDGMPER 280
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
L +WN+++ DA+ EAL +F DM P++VT +++I A
Sbjct: 281 TLVSWNSIITGYSQNG---------DAE---EALCMFLDMLDLGIAPDKVTFLSVIRASM 328
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNA 294
G G H Y+ + + + ALV+MY+K G A + F+ L +DT +
Sbjct: 329 IQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTV 388
Query: 295 MI 296
+I
Sbjct: 389 VI 390
>AT3G08820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2677122-2679179 REVERSE
LENGTH=685
Length = 685
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 141/298 (47%), Gaps = 32/298 (10%)
Query: 8 FNHP-ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTI---SSKLASTYALTIF 63
F P +LK + S +H+ ++ G ++ LL+I S +L + L F
Sbjct: 112 FTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKL--F 169
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC---- 119
IP+ +V + L S +T+ S + A L+ +++ ++P+S+ + AC
Sbjct: 170 DEIPDRSVVTWTALFSGYTT-SGRHREAIDLFKKMV-EMGVKPDSYFIVQVLSACVHVGD 227
Query: 120 -GSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
SG W ++ +E + FV+ +L+N YAK G++ +R +FD + E D+ T
Sbjct: 228 LDSGEWI-------VKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVT 280
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
W+T++ E + LF M +P++ ++V +S+C++LGA
Sbjct: 281 WSTMIQGYASNS------------FPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGA 328
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L G W + R+ N F+ AL+DMY+KCG + ++F ++ ++D NA I
Sbjct: 329 LDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAI 386
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 139/279 (49%), Gaps = 21/279 (7%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFLYNTLIS 79
++N LKQ+H ++ L T+ ++ LL + T Y+ +FS P +FLYN+LI+
Sbjct: 25 TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLIN 84
Query: 80 SFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFL 139
F + + H L+ I H L + FTFP + KAC + + G LH+ V+K
Sbjct: 85 GFVN-NHLFHETLDLFLSIRKH-GLYLHGFTFPLVLKACTRASS-RKLGIDLHSLVVK-- 139
Query: 140 EPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXX 197
++H V A SLL+ Y+ GRL + LFD+I + + TW L
Sbjct: 140 -CGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTT--------- 189
Query: 198 LEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLN 257
+ EA+ LF M +P+ +V ++SAC ++G L G W Y+ ++ N
Sbjct: 190 ---SGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKN 246
Query: 258 RFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
FV T LV++Y+KCG + A +FD + ++D ++ MI
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMI 285
>AT3G22690.2 | Symbols: | INVOLVED IN: photosystem II assembly,
regulation of chlorophyll biosynthetic process,
photosystem I assembly, thylakoid membrane organization,
RNA modification; LOCATED IN: chloroplast; EXPRESSED IN:
13 plant structures; EXPRESSED DURING: LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage, E expanded cotyledon stage, D bilateral stage;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Tetratricopeptide repeat (TPR)-like
superfamily protein (TAIR:AT2G29760.1). |
chr3:8022006-8024534 REVERSE LENGTH=842
Length = 842
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 22/286 (7%)
Query: 16 LQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS----TYALTIFSSIPN-PT 70
L+ C +++ LK H + GL ++ L+ S +L + ++A +F + + T
Sbjct: 39 LKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGT 98
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
F+YN+LI + S S + A L+ R++ + + P+ +TFP AC S G
Sbjct: 99 CFMYNSLIRGYAS-SGLCNEAILLFLRMM-NSGISPDKYTFPFGLSACAKS-RAKGNGIQ 155
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
+H ++K + D FVQ SL++FYA+ G L +R +FD++SE ++ +W +++
Sbjct: 156 IHGLIVK-MGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARR- 213
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGVWTHCYL 249
D + +A+ LF M PN VT+V +ISAC+ L L G + ++
Sbjct: 214 -----------DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI 262
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
+ +++N + +ALVDMY KC +++A +LFD+ + NAM
Sbjct: 263 RNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAM 308
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 136/302 (45%), Gaps = 25/302 (8%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKL-ASTYALTIFSSIPNPT 70
++ K L T ++V+A + +G+ ++ +S L+ + K A A +F
Sbjct: 242 VISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASN 301
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ L N + S++ A ++N ++ ++P+ + S +C + +G
Sbjct: 302 LDLCNAMASNYVRQG-LTREALGVFN-LMMDSGVRPDRISMLSAISSCSQLRNIL-WGKS 358
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
H +VL+ +D+ A L++ Y K R + +FD++S + TWN+++
Sbjct: 359 CHGYVLRNGFESWDNICNA-LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417
Query: 191 XXXXX-------------------XXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALI 230
L L EA+ +FC MQ + VT++++
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477
Query: 231 SACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTF 290
SAC +LGAL W + Y+ +N ++L+ +GT LVDM+S+CG A +F+ LT+RD
Sbjct: 478 SACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVS 537
Query: 291 CY 292
+
Sbjct: 538 AW 539
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 121/273 (44%), Gaps = 20/273 (7%)
Query: 27 QVHAQMLTTGLALHTYC---LSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTS 83
Q+H ++ G A + L H +L S A +F + V + ++I +
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDS--ARKVFDEMSERNVVSWTSMICGYAR 212
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
A L+ R++ + + PNS T + AC + G ++A +
Sbjct: 213 RDFAKD-AVDLFFRMVRDEEVTPNSVTMVCVISACAKLED-LETGEKVYAFIRNSGIEVN 270
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D V A L++ Y K + V++ LFD+ +L N + L
Sbjct: 271 DLMVSA-LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQ------------GL 317
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
+ EAL +F M S RP+ +++++ IS+CS L + G H Y+LRN + + A
Sbjct: 318 TREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA 377
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L+DMY KC + A ++FD+++++ +N+++
Sbjct: 378 LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIV 410
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%)
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALV 265
EA+ LF M S P++ T +SAC+ A G+ H +++ + FV +LV
Sbjct: 117 EAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV 176
Query: 266 DMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
Y++CG L+ A ++FD++++R+ + +MI
Sbjct: 177 HFYAECGELDSARKVFDEMSERNVVSWTSMI 207
>AT5G15300.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:4968384-4970030 REVERSE
LENGTH=548
Length = 548
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 152/340 (44%), Gaps = 60/340 (17%)
Query: 14 KLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLL---TISSKLASTYALTIFSSIPNPT 70
KL Q C ++ TLKQ+HA M+ GL + + L+ ++S A YA +F IP P
Sbjct: 17 KLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPD 76
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V + N ++ ++ S + SLY + + + P+ +TF + KAC W G
Sbjct: 77 VSICNHVLRG-SAQSMKPEKTVSLYTE-MEKRGVSPDRYTFTFVLKACS-KLEWRSNGFA 133
Query: 131 LHAHVLK-----------------------------FLEPPYDHFVQ-ASLLNFYAKYGR 160
H V++ F + H V +S+ + YAK G+
Sbjct: 134 FHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGK 193
Query: 161 LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED----ADLSL----------- 205
+ + LFD++ D WN ++ L D D+
Sbjct: 194 IDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNC 253
Query: 206 ----EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN-NLKLNRFV 260
EAL +F +M+ + P+ VT+++L+SAC+ LG L G H Y+L ++ + +V
Sbjct: 254 GYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYV 313
Query: 261 GT----ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
GT AL+DMY+KCG ++ A ++F + DRD +N +I
Sbjct: 314 GTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLI 353
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 23/232 (9%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F V +N +IS + + A ++ + P+ T SL AC
Sbjct: 228 ARELFDRFTEKDVVTWNAMISGYV-NCGYPKEALGIFKE-MRDAGEHPDVVTILSLLSAC 285
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQA----SLLNFYAKYGRLCVSRCLFDQISEP 174
G + G LH ++L+ +V +L++ YAK G + + +F + +
Sbjct: 286 AVLGD-LETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDR 344
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
DL+TWNTL+ L A+ S+E +F +MQ + PNEVT + +I ACS
Sbjct: 345 DLSTWNTLIVGLA----------LHHAEGSIE---MFEEMQRLKVWPNEVTFIGVILACS 391
Query: 235 NLGALSQGVWTHCYLLRN--NLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+ G + +G + L+R+ N++ N +VDM + G L A + +
Sbjct: 392 HSGRVDEGR-KYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESM 442
>AT3G25060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9128516-9130321 FORWARD
LENGTH=601
Length = 601
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 142/287 (49%), Gaps = 19/287 (6%)
Query: 13 LKLLQKCHSLNT-LKQVHAQMLTTGLALHTYCLSHLLTIS-SKLAS-TYALTIFSSIPNP 69
+K LQ L + Q+HA +++TG L+ +S L S ++ +YA +F +P
Sbjct: 20 IKFLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQR 79
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
V +YN++I + S LY++++A K +QP+S TF KAC SG + G
Sbjct: 80 GVSVYNSMIVVY-SRGKNPDEVLRLYDQMIAEK-IQPDSSTFTMTIKACL-SGLVLEKGE 136
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+ + F D FV +S+LN Y K G++ + LF ++++ D+ W T++
Sbjct: 137 AVWCKAVDF-GYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTG---- 191
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
A SL+A+ + +MQ + V ++ L+ A +LG G H YL
Sbjct: 192 --------FAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYL 243
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
R L +N V T+LVDMY+K G + +A ++F ++ + + ++I
Sbjct: 244 YRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLI 290
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 17/238 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F + V + T+++ F + A Y R + ++ + L +A
Sbjct: 170 AEVLFGKMAKRDVICWTTMVTGFAQAGKSLK-AVEFY-REMQNEGFGRDRVVMLGLLQAS 227
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G + G +H ++ + P + V+ SL++ YAK G + V+ +F ++ +
Sbjct: 228 GDLGD-TKMGRSVHGYLYR-TGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVS 285
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
W +L+ L+ +A +MQ +P+ VTLV ++ ACS +G+
Sbjct: 286 WGSLISG------------FAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGS 333
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L G HCY+L+ ++ L+R TAL+DMYSKCG L+ + ++F+ + +D C+N MI
Sbjct: 334 LKTGRLVHCYILKRHV-LDRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMI 390
>AT5G40405.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:16169315-16171153 FORWARD
LENGTH=612
Length = 612
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 146/327 (44%), Gaps = 54/327 (16%)
Query: 7 IFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLL---TISSKLASTYALTIF 63
I HP + LL + ++Q+HA++ G + + H + +S YA I
Sbjct: 4 IGKHPAIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQIL 63
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAH-KTLQPNSFTFPSLFKACCGSG 122
PT+F N++I + S +F Y RIL+ L+P+++T L +AC G
Sbjct: 64 DRSEKPTLFALNSMIRAHCK-SPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGL- 121
Query: 123 HWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYG--------------------- 159
+ G +H ++ F P+ VQ L++ YA+ G
Sbjct: 122 RMRETGLQVHGMTIRRGFDNDPH---VQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRT 178
Query: 160 ----------RLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALY 209
+ +R LF+ + E D WN ++ S EAL
Sbjct: 179 AMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGE------------SREALN 226
Query: 210 LFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYS 269
+F MQ+ + N V +++++SAC+ LGAL QG W H Y+ RN +K+ + T LVD+Y+
Sbjct: 227 VFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYA 286
Query: 270 KCGCLNLACQLFDQLTDRDTFCYNAMI 296
KCG + A ++F + +++ + +++ +
Sbjct: 287 KCGDMEKAMEVFWGMEEKNVYTWSSAL 313
>AT3G62890.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:23246168-23247973 FORWARD
LENGTH=573
Length = 573
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 124/252 (49%), Gaps = 30/252 (11%)
Query: 72 FLYNTLISSFTSH--SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
FL+N +I + + S Q H S+Y R+ H+ + P+ TFP L + H G
Sbjct: 25 FLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHR-VSPDFHTFPFLLPSFHNPLH-LPLGQ 82
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
HA +L F D FV+ SLLN Y+ G L ++ +FD DL WN+++
Sbjct: 83 RTHAQILLF-GLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKA 141
Query: 190 XXXXXXXXLEDA-------------------DLSLEALYLFCDMQMSRR-----RPNEVT 225
L D EAL LF +MQ+ + RPNE T
Sbjct: 142 GLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFT 201
Query: 226 LVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL- 284
+ ++SAC LGAL QG W H Y+ + +++++ +GTAL+DMY+KCG L A ++F+ L
Sbjct: 202 MSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALG 261
Query: 285 TDRDTFCYNAMI 296
+ +D Y+AMI
Sbjct: 262 SKKDVKAYSAMI 273
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 108/250 (43%), Gaps = 34/250 (13%)
Query: 4 QNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGL-----ALHTYCLSHLLTISSKLASTY 58
++P +L + C L + ++V + L ++ Y + L+ + KL
Sbjct: 95 KDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKL---- 150
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKT----LQPNSFTFPSL 114
F +P V ++ LI+ + + A L+ + K ++PN FT ++
Sbjct: 151 ----FDEMPERNVISWSCLINGYVM-CGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTV 205
Query: 115 FKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQI-SE 173
AC G + G +HA++ K+ D + +L++ YAK G L ++ +F+ + S+
Sbjct: 206 LSACGRLGA-LEQGKWVHAYIDKY-HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK 263
Query: 174 PDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISA 232
D+ ++ ++ L L+ E LF +M S PN VT V ++ A
Sbjct: 264 KDVKAYSAMICC------------LAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGA 311
Query: 233 CSNLGALSQG 242
C + G +++G
Sbjct: 312 CVHRGLINEG 321
>AT5G08305.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:2670134-2671738 REVERSE
LENGTH=534
Length = 534
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 163/333 (48%), Gaps = 53/333 (15%)
Query: 1 MKAQNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS---T 57
+K+ + + IL+ +C S++ L ++H ++T GL+ +S L+ S+ +S
Sbjct: 2 LKSSSSLVAKSILR--HQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVD 59
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
YA S + +P + +N +I F S+S + S+Y ++L L P+ T+P L K+
Sbjct: 60 YAYKFLSKLSDPPNYGWNFVIRGF-SNSRNPEKSISVYIQMLRFGLL-PDHMTYPFLMKS 117
Query: 118 CCGSGHWFQYGPPLHAHVLK-----------------------------FLEPPYDHFVQ 148
+ + G LH V+K F E P+ + V
Sbjct: 118 SSRLSN-RKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVT 176
Query: 149 -ASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEA 207
S+L+ YAK G + +R +FD++SE D+ TW++++ +A
Sbjct: 177 WNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYN------------KA 224
Query: 208 LYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
L +F M +M + NEVT+V++I AC++LGAL++G H Y+L +L L + T+L+D
Sbjct: 225 LEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLID 284
Query: 267 MYSKCGCLNLACQLF--DQLTDRDTFCYNAMIG 297
MY+KCG + A +F + + D +NA+IG
Sbjct: 285 MYAKCGSIGDAWSVFYRASVKETDALMWNAIIG 317
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F + V ++++I + + + A ++++++ + + N T S+ AC
Sbjct: 193 ARLVFDEMSERDVVTWSSMIDGYVKRG-EYNKALEIFDQMMRMGSSKANEVTMVSVICAC 251
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLF--DQISEPDL 176
G G +H ++L + P +Q SL++ YAK G + + +F + E D
Sbjct: 252 AHLGA-LNRGKTVHRYILD-VHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDA 309
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
WN ++ L E+L LF M+ S+ P+E+T + L++ACS+
Sbjct: 310 LMWNAIIGG------------LASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSH- 356
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTA-LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
G L + W L+ + + A +VD+ S+ G + A ++ + T +M
Sbjct: 357 GGLVKEAWHFFKSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPT---GSM 413
Query: 296 IG 297
+G
Sbjct: 414 LG 415
>AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:2753099-2754731 FORWARD
LENGTH=511
Length = 511
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 34/300 (11%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSF 81
+N +KQ+HA L TG+ L LL I + + YA +F N FLYN LI ++
Sbjct: 1 MNGIKQLHAHCLRTGVDETKDLLQRLLLIPNLV---YARKLFDHHQNSCTFLYNKLIQAY 57
Query: 82 TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEP 141
H Q H + LYN +L+ L+P+ TF +F A PL +F
Sbjct: 58 YVHH-QPHESIVLYN-LLSFDGLRPSHHTFNFIFAASASF----SSARPLRLLHSQFFRS 111
Query: 142 PY--DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL- 198
+ D F +L+ YAK G LC +R +FD++S+ D+ WN ++ L
Sbjct: 112 GFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELF 171
Query: 199 -------------------EDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGA 238
++ + S EAL +F M+ + +PN +T+V+++ AC+NLG
Sbjct: 172 DSMPRKNVTSWTTVISGFSQNGNYS-EALKMFLCMEKDKSVKPNHITVVSVLPACANLGE 230
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC-YNAMIG 297
L G Y N N +V A ++MYSKCG +++A +LF++L ++ C +N+MIG
Sbjct: 231 LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIG 290
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 52/253 (20%)
Query: 25 LKQVHAQMLTTGLALHTYCLSHLLTISSKLAS---------------------------- 56
L+ +H+Q +G ++C + L+T +KL +
Sbjct: 101 LRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQR 160
Query: 57 ----TYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFP 112
A+ +F S+P V + T+IS F S + A ++ + K+++PN T
Sbjct: 161 RGDMKAAMELFDSMPRKNVTSWTTVISGF-SQNGNYSEALKMFLCMEKDKSVKPNHITVV 219
Query: 113 SLFKACCGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQ 170
S+ AC G + G L + + F + Y V + + Y+K G + V++ LF++
Sbjct: 220 SVLPACANLGE-LEIGRRLEGYARENGFFDNIY---VCNATIEMYSKCGMIDVAKRLFEE 275
Query: 171 I-SEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVAL 229
+ ++ +L +WN+++ EAL LF M +P+ VT V L
Sbjct: 276 LGNQRNLCSWNSMIGSLATHGKHD------------EALTLFAQMLREGEKPDAVTFVGL 323
Query: 230 ISACSNLGALSQG 242
+ AC + G + +G
Sbjct: 324 LLACVHGGMVVKG 336
>AT4G30700.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:14962617-14964995 REVERSE
LENGTH=792
Length = 792
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 24/288 (8%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
IL + + L Q+H+ TG H Y L+ +++ SK +F P
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPD 286
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ YN +I +TS+ + L+ SL+ ++ L +L SGH
Sbjct: 287 IVAYNAMIHGYTSNG-ETELSLSLFKELM----LSGARLRSSTLVSLVPVSGHLMLI-YA 340
Query: 131 LHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H + LK FL V +L Y+K + +R LFD+ E L +WN ++
Sbjct: 341 IHGYCLKSNFLSHAS---VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQ 397
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
L+ +A+ LF +MQ S PN VT+ ++SAC+ LGALS G W H
Sbjct: 398 N------------GLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ + + + +V TAL+ MY+KCG + A +LFD +T ++ +N MI
Sbjct: 446 VRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMI 493
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 133/292 (45%), Gaps = 17/292 (5%)
Query: 7 IFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSS 65
I + L ++ S++ L Q HAQ++ G L+ L S L + Y A IF S
Sbjct: 18 ISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77
Query: 66 IPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF 125
+ P VFL+N L+ F+ + S H + S++ + L+PNS T+ A G
Sbjct: 78 VQRPDVFLFNVLMRGFSVNESP-HSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRD-D 135
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
+ G +H + + + ++++ Y K+ R+ +R +FD++ E D WNT++
Sbjct: 136 RAGRVIHGQAV-VDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISG 194
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVW 244
++ +E++ +F D+ S R + TL+ ++ A + L L G+
Sbjct: 195 Y------------RKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQ 242
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H + + +V T + +YSKCG + + LF + D YNAMI
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMI 294
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 37/265 (13%)
Query: 38 ALHTYCL-----SH------LLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSHS 85
A+H YCL SH L T+ SKL A +F P ++ +N +IS +T +
Sbjct: 340 AIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYT-QN 398
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
A SL+ R + PN T + AC G G +H +++ +
Sbjct: 399 GLTEDAISLF-REMQKSEFSPNPVTITCILSACAQLGA-LSLGKWVH-DLVRSTDFESSI 455
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
+V +L+ YAK G + +R LFD +++ + TWNT++
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQ------------ 503
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG-----VWTHCYLLRNNLKLNRFV 260
EAL +F +M S P VT + ++ ACS+ G + +G H Y ++K
Sbjct: 504 EALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY--- 560
Query: 261 GTALVDMYSKCGCLNLACQLFDQLT 285
+VD+ + G L A Q + ++
Sbjct: 561 -ACMVDILGRAGHLQRALQFIEAMS 584
>AT3G04750.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1301391-1303376 REVERSE
LENGTH=661
Length = 661
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 144/303 (47%), Gaps = 32/303 (10%)
Query: 3 AQNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY---- 58
Q+ NH L LL+ C+S N KQV AQ++ L T+ +S L+ S A TY
Sbjct: 28 VQSLQLNHQSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMSRLIFFS---AITYPENL 84
Query: 59 ---ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
L + PNP VF+YNT+IS+ +S ++ F LY+ ++ H+ + P+ TF L
Sbjct: 85 DLAKLLFLNFTPNPNVFVYNTMISAVSSSKNE---CFGLYSSMIRHR-VSPDRQTFLYLM 140
Query: 116 KACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD 175
KA + +H H++ +++ SL+ FY + G V+ +F ++ PD
Sbjct: 141 KASS----FLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPD 196
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
++++N ++ SLEAL L+ M P+E T+++L+ C +
Sbjct: 197 VSSFNVMIVGYA------------KQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGH 244
Query: 236 LGALSQGVWTHCYLLRNN--LKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYN 293
L + G H ++ R N + AL+DMY KC LA + FD + +D +N
Sbjct: 245 LSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWN 304
Query: 294 AMI 296
M+
Sbjct: 305 TMV 307
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 147/309 (47%), Gaps = 29/309 (9%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTG-LALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
L L++ L+ +KQ+H ++ +G L+L Y + L+ +L + A +F+ +P+P
Sbjct: 137 LYLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPD 196
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +N +I + + A LY ++++ ++P+ +T SL CCG + G
Sbjct: 197 VSSFNVMIVGYAKQGFSLE-ALKLYFKMVSD-GIEPDEYTVLSLL-VCCGHLSDIRLGKG 253
Query: 131 LHAHVLKFLEPPYDH--FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H + + P Y + +LL+ Y K +++ FD + + D+ +WNT++
Sbjct: 254 VHGWIER-RGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVR 312
Query: 189 XXXXXXXXXLEDA----DLSLEALYLF------CDMQMSRR-----------RPNEVTLV 227
+ D DL LF CD + R +P+ VT+V
Sbjct: 313 LGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMV 372
Query: 228 ALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
+LIS +N G LS G W H ++R LK + F+ +AL+DMY KCG + A +F T++
Sbjct: 373 SLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEK 432
Query: 288 DTFCYNAMI 296
D + +MI
Sbjct: 433 DVALWTSMI 441
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 103/241 (42%), Gaps = 17/241 (7%)
Query: 3 AQNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTI 62
+ N I ++ +L + KC K+ M + + + + A A +
Sbjct: 266 SSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEA---AQAV 322
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
F +P + +N+L+ ++ L+ + + ++P+ T SL +G
Sbjct: 323 FDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNG 382
Query: 123 HWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
+G +H V++ L+ D F+ ++L++ Y K G + + +F +E D+A W ++
Sbjct: 383 E-LSHGRWVHGLVIR-LQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSM 440
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ +AL LF MQ PN VTL+A+++ACS+ G + +G
Sbjct: 441 ITGLAFHGN------------GQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEG 488
Query: 243 V 243
+
Sbjct: 489 L 489
>AT3G13770.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:4519647-4521533 FORWARD
LENGTH=628
Length = 628
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 137/296 (46%), Gaps = 30/296 (10%)
Query: 10 HPILKLLQKC---HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSS 65
H LL C +L ++VHA M+ T TY + LL K A +
Sbjct: 53 HGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDE 112
Query: 66 IPNPTVFLYNTLISSF--TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC-GSG 122
+P V + +IS + T HSS+ F+ R +PN FTF ++ +C SG
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMR----SDGKPNEFTFATVLTSCIRASG 168
Query: 123 HWFQYGPPLHAHVLKFLEPPYDH--FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
G +H ++K+ YD FV +SLL+ YAK G++ +R +F+ + E D+ +
Sbjct: 169 --LGLGKQIHGLIVKW---NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCT 223
Query: 181 TLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS 240
++ L EAL +F + PN VT +L++A S L L
Sbjct: 224 AIIAGYAQL------------GLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLD 271
Query: 241 QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G HC++LR L + +L+DMYSKCG L+ A +LFD + +R +NAM+
Sbjct: 272 HGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAML 327
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 122/281 (43%), Gaps = 30/281 (10%)
Query: 18 KCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNT 76
+ L KQ+H ++ H + S LL + +K A IF +P V
Sbjct: 165 RASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTA 224
Query: 77 LISSFTSHSSQIHL---AFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+I+ + +Q+ L A +++R L + + PN T+ SL A G +G H
Sbjct: 225 IIAGY----AQLGLDEEALEMFHR-LHSEGMSPNYVTYASLLTALSGLA-LLDHGKQAHC 278
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
HVL+ E P+ +Q SL++ Y+K G L +R LFD + E +WN +L
Sbjct: 279 HVLR-RELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKH---- 333
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGVWTHCYLLRN 252
L E L LF M+ +R +P+ VTL+A++S CS+ G+ ++
Sbjct: 334 --------GLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAG 385
Query: 253 NLKLNRFVGTA----LVDMYSKCGCLNLACQLFDQLTDRDT 289
GT +VDM + G ++ A + ++ + T
Sbjct: 386 EYGTK--PGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPT 424
>AT1G50270.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:18622044-18623834 FORWARD
LENGTH=596
Length = 596
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 17/287 (5%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLT-ISSKLASTYALTIFSSIPNP 69
P+LK + K N Q HA ++ GL + + L++ SS +A +F +
Sbjct: 109 PLLKAVFKLRDSNPF-QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDK 167
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
V + +I F + S +Y + + N T S+ KA G ++G
Sbjct: 168 DVVTWTAMIDGFVRNGSASEAM--VYFVEMKKTGVAANEMTVVSVLKAA-GKVEDVRFGR 224
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+H L+ D F+ +SL++ Y K ++ +FD++ ++ TW L+
Sbjct: 225 SVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQS 284
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
+ + +F +M S PNE TL +++SAC+++GAL +G HCY+
Sbjct: 285 RCFD------------KGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM 332
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++N++++N GT L+D+Y KCGCL A +F++L +++ + + AMI
Sbjct: 333 IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMI 379
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 121/286 (42%), Gaps = 21/286 (7%)
Query: 3 AQNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTG-LALHTYCLSHLLTISSKLASTY--A 59
A N + +LK K + + VH L TG + + S L+ + K S Y A
Sbjct: 201 AANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGK-CSCYDDA 259
Query: 60 LTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC 119
+F +P+ V + LI+ + S ++ +L + PN T S+ AC
Sbjct: 260 QKVFDEMPSRNVVTWTALIAGYV-QSRCFDKGMLVFEEML-KSDVAPNEKTLSSVLSACA 317
Query: 120 GSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATW 179
G G +H +++K + +L++ Y K G L + +F+++ E ++ TW
Sbjct: 318 HVGA-LHRGRRVHCYMIKN-SIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTW 375
Query: 180 NTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGAL 239
++ + +A LF M S PNEVT +A++SAC++ G +
Sbjct: 376 TAMINGFAAH------------GYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLV 423
Query: 240 SQGVWTHCYLL-RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+G + R N++ +VD++ + G L A L +++
Sbjct: 424 EEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERM 469
>AT1G04840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1362867-1364962 REVERSE
LENGTH=665
Length = 665
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 148/341 (43%), Gaps = 64/341 (18%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTV 71
+ L+ C +L+ VHAQ+L G+ L + + L++ SS L S Y+L+IF +
Sbjct: 33 ISLIHACKDTASLRHVHAQILRRGV-LSSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNP 91
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHK-TLQPNSFTFPSLFKACCGSG-HWFQYGP 129
F+ N LI T ++ S+ + IL + ++P+ TFP + K+ G W G
Sbjct: 92 FVLNALIRGLTENA---RFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWL--GR 146
Query: 130 PLHA----------------------------HVLKFLEPPYDHFVQASLL------NFY 155
LHA H + E D + S+L N Y
Sbjct: 147 ALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGY 206
Query: 156 AKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL----------------- 198
+ + ++ LF + E + +W+TL+ L
Sbjct: 207 CRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLIN 266
Query: 199 ---EDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLK 255
+ D A+ + +M +PNE T+ A++SACS GAL G+ H Y+L N +K
Sbjct: 267 GFSQTGDYET-AISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIK 325
Query: 256 LNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L+R +GTALVDMY+KCG L+ A +F + +D + AMI
Sbjct: 326 LDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMI 366
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 27/232 (11%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F +P V + TLI+ F S + A S Y +L K L+PN +T ++ AC
Sbjct: 246 AKQLFELMPEKNVVSWTTLINGF-SQTGDYETAISTYFEML-EKGLKPNEYTIAAVLSAC 303
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
SG G +H ++L D + +L++ YAK G L + +F ++ D+ +
Sbjct: 304 SKSGA-LGSGIRIHGYILDN-GIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILS 361
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
W ++ +A+ F M S +P+EV +A+++AC N
Sbjct: 362 WTAMIQGWAVHGRFH------------QAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSE 409
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTAL------VDMYSKCGCLNLACQLFDQL 284
+ G+ ++++L+ + L VD+ + G LN A +L + +
Sbjct: 410 VDLGL-----NFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENM 456
>AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1685 (InterPro:IPR012881),
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: Tetratricopeptide
repeat (TPR)-like superfamily protein
(TAIR:AT2G29760.1); Has 49784 Blast hits to 14716
proteins in 280 species: Archae - 2; Bacteria - 10;
Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0;
Other Eukaryotes - 904 (source: NCBI BLink). |
chr3:8021347-8024534 REVERSE LENGTH=938
Length = 938
Score = 114 bits (285), Expect = 8e-26, Method: Composition-based stats.
Identities = 85/289 (29%), Positives = 149/289 (51%), Gaps = 28/289 (9%)
Query: 16 LQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS----TYALTIF-SSIPNPT 70
L+ C +++ LK H + GL ++ L+ S +L + ++A +F +S T
Sbjct: 39 LKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGT 98
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS---GHWFQY 127
F+YN+LI + S S + A L+ R++ + + P+ +TFP AC S G+ Q
Sbjct: 99 CFMYNSLIRGYAS-SGLCNEAILLFLRMM-NSGISPDKYTFPFGLSACAKSRAKGNGIQ- 155
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
+H ++K + D FVQ SL++FYA+ G L +R +FD++SE ++ +W +++
Sbjct: 156 ---IHGLIVK-MGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYA 211
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGVWTH 246
D + +A+ LF M PN VT+V +ISAC+ L L G +
Sbjct: 212 RR------------DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
++ + +++N + +ALVDMY KC +++A +LFD+ + NAM
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAM 308
Score = 84.7 bits (208), Expect = 7e-17, Method: Composition-based stats.
Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 25/298 (8%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKL-ASTYALTIFSSIPNPT 70
++ K L T ++V+A + +G+ ++ +S L+ + K A A +F
Sbjct: 242 VISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASN 301
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ L N + S++ A ++N ++ ++P+ + S +C + +G
Sbjct: 302 LDLCNAMASNYVRQG-LTREALGVFN-LMMDSGVRPDRISMLSAISSCSQLRNIL-WGKS 358
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL-------- 182
H +VL+ +D+ A L++ Y K R + +FD++S + TWN++
Sbjct: 359 CHGYVLRNGFESWDNICNA-LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417
Query: 183 -----------LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALI 230
+ L L EA+ +FC MQ + VT++++
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477
Query: 231 SACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRD 288
SAC +LGAL W + Y+ +N ++L+ +GT LVDM+S+CG A +F+ LT+RD
Sbjct: 478 SACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD 535
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 66/274 (24%), Positives = 121/274 (44%), Gaps = 20/274 (7%)
Query: 27 QVHAQMLTTGLALHTYC---LSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTS 83
Q+H ++ G A + L H +L S A +F + V + ++I +
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDS--ARKVFDEMSERNVVSWTSMICGYAR 212
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
A L+ R++ + + PNS T + AC + G ++A +
Sbjct: 213 RDFAKD-AVDLFFRMVRDEEVTPNSVTMVCVISACAKLED-LETGEKVYAFIRNSGIEVN 270
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D V A L++ Y K + V++ LFD+ +L N + L
Sbjct: 271 DLMVSA-LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQ------------GL 317
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
+ EAL +F M S RP+ +++++ IS+CS L + G H Y+LRN + + A
Sbjct: 318 TREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA 377
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
L+DMY KC + A ++FD+++++ +N+++
Sbjct: 378 LIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVA 411
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 51/91 (56%)
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALV 265
EA+ LF M S P++ T +SAC+ A G+ H +++ + FV +LV
Sbjct: 117 EAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV 176
Query: 266 DMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
Y++CG L+ A ++FD++++R+ + +MI
Sbjct: 177 HFYAECGELDSARKVFDEMSERNVVSWTSMI 207
>AT4G25270.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:12937253-12938836 REVERSE
LENGTH=527
Length = 527
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 143/296 (48%), Gaps = 41/296 (13%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALH----TYCLSHLLTISSKLASTYALTIFSSIP--- 67
LL+ C+SL + G+ +H Y L + L ISSKL YA ++ +
Sbjct: 98 LLETCYSLRAIDH--------GVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEV 149
Query: 68 -------NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG 120
+ + F +N+LIS + + Q A +LY + +A ++P+ FTFP + KAC G
Sbjct: 150 FDRMSKRDSSPFAWNSLISGY-AELGQYEDAMALYFQ-MAEDGVKPDRFTFPRVLKACGG 207
Query: 121 SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
G Q G +H ++K YD +V +L+ YAK G + +R +FD I D +WN
Sbjct: 208 IGS-VQIGEAIHRDLVK-EGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWN 265
Query: 181 TLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS 240
++L L EAL +F M + P++V A+ S + + +
Sbjct: 266 SMLTGYLHH------------GLLHEALDIFRLMVQNGIEPDKV---AISSVLARVLSFK 310
Query: 241 QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G H +++R ++ V AL+ +YSK G L AC +FDQ+ +RDT +NA+I
Sbjct: 311 HGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAII 366
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 121/277 (43%), Gaps = 31/277 (11%)
Query: 14 KLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNP 69
++L+ C + ++ + +H ++ G Y L+ L+ + +K A +F IP+
Sbjct: 200 RVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHK 259
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
+N++++ + H +H A ++ R++ ++P+ S+ F++G
Sbjct: 260 DYVSWNSMLTGYLHHG-LLHEALDIF-RLMVQNGIEPDKVAISSVLARVLS----FKHGR 313
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
LH V++ ++ V +L+ Y+K G+L + +FDQ+ E D +WN ++
Sbjct: 314 QLHGWVIR-RGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKN 372
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
L F M + +P+ +T V+++S C+N G + G +
Sbjct: 373 S---------------NGLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLM 417
Query: 250 LRN---NLKLNRFVGTALVDMYSKCGCLNLACQLFDQ 283
+ + K+ + +V++Y + G + A + Q
Sbjct: 418 SKEYGIDPKMEHY--ACMVNLYGRAGMMEEAYSMIVQ 452
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 31/239 (12%)
Query: 67 PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA---CCGSGH 123
P+PT L I + H +Q+ S+ L + S T P +F + C S
Sbjct: 52 PSPTPLL----IEKQSIHRTQLEALDSVITD-LETSAQKGISLTEPEIFASLLETCYSLR 106
Query: 124 WFQYGPPLHAHVLKFLEPPY----DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA-- 177
+G +H H++ PPY + + + L+ YA G V+ +FD++S+ D +
Sbjct: 107 AIDHGVRVH-HLI----PPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPF 161
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
WN+L+ EDA + L+ M +P+ T ++ AC +G
Sbjct: 162 AWNSLISGYAELGQY------EDA------MALYFQMAEDGVKPDRFTFPRVLKACGGIG 209
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ G H L++ + +V ALV MY+KCG + A +FD + +D +N+M+
Sbjct: 210 SVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSML 268
>AT5G61800.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24830054-24831553 REVERSE
LENGTH=499
Length = 499
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 146/315 (46%), Gaps = 35/315 (11%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTY--------CLSHLLTIS-----SKLASTYALT 61
LL+ C +L L Q HAQ +T+G + + L + +IS SK +YA +
Sbjct: 10 LLKLCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSYATS 69
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F I NP+ F +NT+I T H L+ + + +++ P+ TFP +FKAC
Sbjct: 70 VFRFITNPSTFCFNTIIRICTLHEPS-SLSSKRFFVEMRRRSVPPDFHTFPFVFKACAAK 128
Query: 122 GHW-FQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
+ LH L+F D F +L+ Y+ + + LFD+ + D+ T+N
Sbjct: 129 KNGDLTLVKTLHCQALRF-GLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYN 187
Query: 181 TLLXXXXXXXXXXXXXXLEDA----DLS---------------LEALYLFCDMQMSRRRP 221
L+ L D+ DL EA+ LF +M +P
Sbjct: 188 VLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKP 247
Query: 222 NEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLF 281
+ V +V+ +SAC+ G +G H Y R L ++ F+ T LVD Y+KCG ++ A ++F
Sbjct: 248 DNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIF 307
Query: 282 DQLTDRDTFCYNAMI 296
+ +D+ F +NAMI
Sbjct: 308 ELCSDKTLFTWNAMI 322
>AT3G24000.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:8672774-8674881 FORWARD
LENGTH=665
Length = 665
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 134/293 (45%), Gaps = 34/293 (11%)
Query: 15 LLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
LL+KC L Q VHA +L + + LL + +K S A +F +P
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA-------CCGSGH 123
+ TLIS ++ H A +N++L PN FT S+ KA CCG
Sbjct: 126 FVTWTTLISGYSQHDRPCD-ALLFFNQMLRF-GYSPNEFTLSSVIKAAAAERRGCCGH-- 181
Query: 124 WFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
LH +K H V ++LL+ Y +YG + ++ +FD + + +WN L+
Sbjct: 182 ------QLHGFCVKCGFDSNVH-VGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 234
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
+ +AL LF M RP+ + +L ACS+ G L QG
Sbjct: 235 AGHARRSG------------TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGK 282
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
W H Y++++ KL F G L+DMY+K G ++ A ++FD+L RD +N+++
Sbjct: 283 WVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLL 335
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 126/261 (48%), Gaps = 28/261 (10%)
Query: 36 GLALHTYCLS-------HLLTISSKLASTYALT-----IFSSIPNPTVFLYNTLISSFTS 83
G LH +C+ H+ + L + Y L +F ++ + +N LI+
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
S A L+ +L +P+ F++ SLF AC +G + + G +HA+++K E
Sbjct: 240 RSG-TEKALELFQGML-RDGFRPSHFSYASLFGACSSTG-FLEQGKWVHAYMIKSGEKLV 296
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
F +LL+ YAK G + +R +FD++++ D+ +WN+LL
Sbjct: 297 -AFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH------------GF 343
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
EA++ F +M+ RPNE++ +++++ACS+ G L +G + + ++ + +
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVT 403
Query: 264 LVDMYSKCGCLNLACQLFDQL 284
+VD+ + G LN A + +++
Sbjct: 404 VVDLLGRAGDLNRALRFIEEM 424
>AT3G56550.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:20952896-20954641 REVERSE
LENGTH=581
Length = 581
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 147/294 (50%), Gaps = 29/294 (9%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLL---TISSKLASTYALTIFSSIP- 67
I+++LQ C+S+ L+++H+ ++ GL H +HLL +S + ++A +F
Sbjct: 8 IVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDS 67
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
+P+ +N LI F++ SS ++ + YNR+L +P+ FTF K+C +
Sbjct: 68 DPSTSDWNYLIRGFSNSSSPLN-SILFYNRMLLSSVSRPDLFTFNFALKSC----ERIKS 122
Query: 128 GP---PLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
P +H V++ FL+ D V SL+ Y+ G + ++ +FD++ DL +WN +
Sbjct: 123 IPKCLEIHGSVIRSGFLD---DAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVM 179
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ L +AL ++ M + TLVAL+S+C+++ AL+ G
Sbjct: 180 ICC------------FSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMG 227
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
V H + FV AL+DMY+KCG L A +F+ + RD +N+MI
Sbjct: 228 VMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMI 281
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 20/272 (7%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTV 71
LK ++ S+ ++H ++ +G + L+ S S A +F +P +
Sbjct: 114 LKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDL 173
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
+N +I F SH + A S+Y R + ++ + +S+T +L +C G L
Sbjct: 174 VSWNVMICCF-SHVGLHNQALSMYKR-MGNEGVCGDSYTLVALLSSCAHVSA-LNMGVML 230
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
H + + FV +L++ YAK G L + +F+ + + D+ TWN+++
Sbjct: 231 H-RIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGH 289
Query: 192 XXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLR 251
+EA+ F M S RPN +T + L+ CS+ G + +GV H ++
Sbjct: 290 ------------GVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGV-EHFEIMS 336
Query: 252 NNLKLNRFVG--TALVDMYSKCGCLNLACQLF 281
+ L V +VD+Y + G L + ++
Sbjct: 337 SQFHLTPNVKHYGCMVDLYGRAGQLENSLEMI 368
>AT2G03380.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:1028292-1030361 FORWARD
LENGTH=689
Length = 689
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 140/294 (47%), Gaps = 32/294 (10%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY--------ALTI 62
P LL KC ++++L+Q H + GL ++I++KL S Y A +
Sbjct: 46 PCFLLLSKCTNIDSLRQSHGVLTGNGLMGD-------ISIATKLVSLYGFFGYTKDARLV 98
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
F IP P +L+ ++ + + + + LY+ ++ H + + F KAC
Sbjct: 99 FDQIPEPDFYLWKVMLRCYCLNKESVEVV-KLYDLLMKH-GFRYDDIVFSKALKACT-EL 155
Query: 123 HWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
G +H ++K P +D+ V LL+ YAK G + + +F+ I+ ++ W ++
Sbjct: 156 QDLDNGKKIHCQLVKV--PSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSM 213
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ DL E L LF M+ + NE T LI AC+ L AL QG
Sbjct: 214 IAGYVKN------------DLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQG 261
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
W H L+++ ++L+ + T+L+DMY KCG ++ A ++F++ + D + AMI
Sbjct: 262 KWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMI 315
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 148/304 (48%), Gaps = 24/304 (7%)
Query: 1 MKAQNPIFN-HPILKLLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLAS 56
M+ N + N + L+ C L+ L Q H ++ +G+ L + ++ LL + K
Sbjct: 233 MRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGD 292
Query: 57 -TYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
+ A +F+ + + ++ +I +T H+ ++ A SL+ ++ + ++PN T S+
Sbjct: 293 ISNARRVFNEHSHVDLVMWTAMIVGYT-HNGSVNEALSLFQKMKGVE-IKPNCVTIASVL 350
Query: 116 KACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD 175
C G + G +H +K +D V +L++ YAK + ++ +F+ SE D
Sbjct: 351 SGC-GLIENLELGRSVHGLSIKV--GIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKD 407
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
+ WN+++ EAL+LF M PN VT+ +L SAC++
Sbjct: 408 IVAWNSIISGFSQNGSIH------------EALFLFHRMNSESVTPNGVTVASLFSACAS 455
Query: 236 LGALSQGVWTHCYLLRNNL--KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYN 293
LG+L+ G H Y ++ + VGTAL+D Y+KCG A +FD + +++T ++
Sbjct: 456 LGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWS 515
Query: 294 AMIG 297
AMIG
Sbjct: 516 AMIG 519
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 119/239 (49%), Gaps = 20/239 (8%)
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F + +N++IS F+ + S IH A L++R + +++ PN T SLF AC
Sbjct: 399 VFEMESEKDIVAWNSIISGFSQNGS-IHEALFLFHR-MNSESVTPNGVTVASLFSACASL 456
Query: 122 GHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATW 179
G G LHA+ +K FL H V +LL+FYAK G +R +FD I E + TW
Sbjct: 457 GS-LAVGSSLHAYSVKLGFLASSSVH-VGTALLDFYAKCGDPQSARLIFDTIEEKNTITW 514
Query: 180 NTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGAL 239
+ ++ + D ++ +L LF +M +++PNE T +++SAC + G +
Sbjct: 515 SAMIGGYG-----------KQGD-TIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMV 562
Query: 240 SQGVWTHCYLLRN-NLKLNRFVGTALVDMYSKCGCLNLACQLFDQL-TDRDTFCYNAMI 296
++G + ++ N + T +VDM ++ G L A + +++ D C+ A +
Sbjct: 563 NEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFL 621
>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:22561941-22564433 REVERSE
LENGTH=830
Length = 830
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 142/290 (48%), Gaps = 24/290 (8%)
Query: 14 KLLQKC---HSLNTLKQVHAQMLTTG--LALHTYCLSHLLTISSKL-ASTYALTIFSSIP 67
++LQ C L+T KQ+HA++L G A + Y + L+ +K A A +FS +
Sbjct: 75 EILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLR 134
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
VF + +I A + +L ++ P++F P++ KAC G+ W ++
Sbjct: 135 VRNVFSWAAIIG-VKCRIGLCEGALMGFVEMLENEIF-PDNFVVPNVCKAC-GALKWSRF 191
Query: 128 GPPLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXX 186
G +H +V+K LE FV +SL + Y K G L + +FD+I + + WN L+
Sbjct: 192 GRGVHGYVVKSGLEDCV--FVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGY 249
Query: 187 XXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTH 246
EA+ LF DM+ P VT+ +SA +N+G + +G +H
Sbjct: 250 VQNGKNE------------EAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSH 297
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ N ++L+ +GT+L++ Y K G + A +FD++ ++D +N +I
Sbjct: 298 AIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLII 347
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 137/300 (45%), Gaps = 24/300 (8%)
Query: 4 QNPIF--NHPILKLLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLAS-T 57
+N IF N + + + C +L + VH ++ +GL + S L + K
Sbjct: 166 ENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLD 225
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
A +F IP+ +N L+ + + A L++ + + ++P T + A
Sbjct: 226 DASKVFDEIPDRNAVAWNALMVGYVQNGKN-EEAIRLFSD-MRKQGVEPTRVTVSTCLSA 283
Query: 118 CCGSGHWFQYGPPLHA-HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
G + G HA ++ +E D+ + SLLNFY K G + + +FD++ E D+
Sbjct: 284 SANMGG-VEEGKQSHAIAIVNGME--LDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDV 340
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
TWN ++ L +A+Y+ M++ + + + VTL L+SA +
Sbjct: 341 VTWNLIISGYV------------QQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAART 388
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L G CY +R++ + + + + ++DMY+KCG + A ++FD ++D +N ++
Sbjct: 389 ENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLL 448
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 115/299 (38%), Gaps = 64/299 (21%)
Query: 14 KLLQKCHSLNTLKQVHAQM--LTTGLALHTYCLSHLLTISSKLASTY------------A 59
KL C +L TL A+ L G + YC+ H LAST A
Sbjct: 370 KLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDA 429
Query: 60 LTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC 119
+F S + L+NTL++++ Y L + + PN T+ + +
Sbjct: 430 KKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQL--EGVPPNVITWNLIILSLL 487
Query: 120 GSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATW 179
+G ++ D F+Q P+L +W
Sbjct: 488 RNGQ---------------VDEAKDMFLQMQSSGII------------------PNLISW 514
Query: 180 NTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGAL 239
T++ + S EA+ MQ S RPN ++ +SAC++L +L
Sbjct: 515 TTMMNG------------MVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASL 562
Query: 240 SQGVWTHCYLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G H Y++R NL+ + V T+LVDMY+KCG +N A ++F + NAMI
Sbjct: 563 HIGRTIHGYIIR-NLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMI 620
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 19/202 (9%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVFLYNTLISSFTSH 84
KQ HA + G+ L + LL K+ YA +F + V +N +IS +
Sbjct: 294 KQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQ- 352
Query: 85 SSQIHLAFSLYN-RILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
Q + ++Y +++ + L+ + T +L A + + + G + + ++
Sbjct: 353 --QGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTEN-LKLGKEVQCYCIRH-SFES 408
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D + +++++ YAK G + ++ +FD E DL WNTLL ++ L
Sbjct: 409 DIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA------------ESGL 456
Query: 204 SLEALYLFCDMQMSRRRPNEVT 225
S EAL LF MQ+ PN +T
Sbjct: 457 SGEALRLFYGMQLEGVPPNVIT 478
>AT1G10330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:3388747-3390150 FORWARD
LENGTH=467
Length = 467
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 146/311 (46%), Gaps = 58/311 (18%)
Query: 13 LKLLQK-CHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTV 71
L LLQ+ +S N +KQ+H +LT+ ++ +AS + T
Sbjct: 17 LHLLQRFLYSSNQIKQIHTVLLTS---------------NALVASRW----------KTK 51
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
+YNTLI S+ + + + + +L+ +LA +QPN+ TFPSL KA C S YG L
Sbjct: 52 CVYNTLIRSYLT-TGEYKTSLALFTHMLASH-VQPNNLTFPSLIKAACSS-FSVSYGVAL 108
Query: 132 HAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX---- 185
H LK FL +D FVQ S + FY + G L SR +FD I P + N+LL
Sbjct: 109 HGQALKRGFL---WDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRN 165
Query: 186 ---------------XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR---RPNEVTLV 227
L +AL +F +M + R PNE T V
Sbjct: 166 GEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFV 225
Query: 228 ALISACSNL--GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLT 285
+++S+C+N G + G H Y++ + L +GTAL+DMY K G L +A +FDQ+
Sbjct: 226 SVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIR 285
Query: 286 DRDTFCYNAMI 296
D+ +NA+I
Sbjct: 286 DKKVCAWNAII 296
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 17/189 (8%)
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHK--TLQPNSFTFPSLF 115
YA F +P V + T+I+ F+ A ++ ++ ++ + PN TF S+
Sbjct: 170 YAFEYFQRMPVTDVVSWTTVINGFSKKGLHAK-ALMVFGEMIQNERAVITPNEATFVSVL 228
Query: 116 KACCG-SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
+C + G +H +V+ E + +LL+ Y K G L ++ +FDQI +
Sbjct: 229 SSCANFDQGGIRLGKQIHGYVMS-KEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDK 287
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
+ WN ++ L +AL +F M+ S PN +TL+A+++AC+
Sbjct: 288 KVCAWNAIISA------------LASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACA 335
Query: 235 NLGALSQGV 243
+ G+
Sbjct: 336 RSKLVDLGI 344
>AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:17231975-17233948 REVERSE
LENGTH=657
Length = 657
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 139/285 (48%), Gaps = 27/285 (9%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFLYNTLIS 79
SL+ +VH +L G + + L+ + S L S YA +F T++++N L
Sbjct: 92 SLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFR 151
Query: 80 SFT--SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC----CGSGHWFQYGPPLHA 133
+ T H ++ + NRI ++ + FT+ + KAC C H + G +HA
Sbjct: 152 ALTLAGHGEEVLGLYWKMNRI----GVESDRFTYTYVLKACVASECTVNHLMK-GKEIHA 206
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
H+ + + ++ +L++ YA++G + + +F + ++ +W+ ++
Sbjct: 207 HLTRRGYSSHV-YIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGK-- 263
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRR--RPNEVTLVALISACSNLGALSQGVWTHCYLLR 251
+ EAL F +M + PN VT+V+++ AC++L AL QG H Y+LR
Sbjct: 264 ----------AFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR 313
Query: 252 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L V +ALV MY +CG L + ++FD++ DRD +N++I
Sbjct: 314 RGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLI 358
>AT1G26900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:9319756-9321474 REVERSE
LENGTH=572
Length = 572
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 144/292 (49%), Gaps = 25/292 (8%)
Query: 10 HPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNP 69
++ L+ C + ++H M+ TGL + +S LL SS L YA +IF + N
Sbjct: 29 QKLINDLRSCRDTVEVSRIHGYMVKTGLDKDDFAVSKLLAFSSVLDIRYASSIFEHVSNT 88
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC----CGSGHWF 125
+F++NT+I + S S + AFS++N++ A K L + F+F + K+C C S
Sbjct: 89 NLFMFNTMIRGY-SISDEPERAFSVFNQLRA-KGLTLDRFSFITTLKSCSRELCVSIGEG 146
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP-DLATWNTLLX 184
+G L + + F + ++ +L++FY G++ +R +FD++ + D T++TL+
Sbjct: 147 LHGIALRSGFMVFTD------LRNALIHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMN 200
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
AL LF M+ S N TL++ +SA S+LG LS
Sbjct: 201 GYLQVSKKAL------------ALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAES 248
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++ L L+ + TAL+ MY K G ++ A ++FD +D +N MI
Sbjct: 249 AHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMI 300
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 24/276 (8%)
Query: 26 KQVHAQMLTTGLALHT---YCLSHLLTISSKLASTYALTIFSSIPNPT-VFLYNTLISSF 81
+ +H L +G + T L H + K++ A +F +P ++TL++ +
Sbjct: 145 EGLHGIALRSGFMVFTDLRNALIHFYCVCGKISD--ARKVFDEMPQSVDAVTFSTLMNGY 202
Query: 82 TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF-LE 140
S + LA L+ RI+ + N T S A G AHVL +
Sbjct: 203 LQVSKK-ALALDLF-RIMRKSEVVVNVSTLLSFLSAISDLG---DLSGAESAHVLCIKIG 257
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
D + +L+ Y K G + +R +FD D+ TWN ++
Sbjct: 258 LDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAK------------ 305
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
L E ++L M+ + +PN T V L+S+C+ A G L + L+ +
Sbjct: 306 TGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAIL 365
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
GTALVDMY+K G L A ++F+++ D+D + AMI
Sbjct: 366 GTALVDMYAKVGLLEKAVEIFNRMKDKDVKSWTAMI 401
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 19/234 (8%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTV 71
L + L+ + H + GL L + ++ L+ + K + A IF V
Sbjct: 234 LSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDV 293
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
+N +I + + L R + ++ ++PNS TF L +C S F G +
Sbjct: 294 VTWNCMIDQYAKTGLLEECVWLL--RQMKYEKMKPNSSTFVGLLSSCAYSEAAF-VGRTV 350
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
A +L+ D + +L++ YAK G L + +F+++ + D+ +W ++
Sbjct: 351 -ADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVKSWTAMISGYGAH-- 407
Query: 192 XXXXXXLEDADLSLEALYLFCDMQMS--RRRPNEVTLVALISACSNLGALSQGV 243
L+ EA+ LF M+ + RPNE+T + +++ACS+ G + +G+
Sbjct: 408 ----------GLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVMEGI 451
>AT1G33350.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:12090071-12091687 REVERSE
LENGTH=538
Length = 538
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 147/317 (46%), Gaps = 32/317 (10%)
Query: 7 IFNHPILKLLQKCHSLNTLKQVHAQMLTTGLA-LHTYCLSHLLTISSKLAS-TYALTIFS 64
+ N I ++ K LN LKQV + M+ +GL+ H C L + +L + +YA IF
Sbjct: 22 LLNQFISAVISKSRHLNHLKQVQSFMIVSGLSHSHFLCFKLLRFCTLRLCNLSYARFIFD 81
Query: 65 SIPNPTVFLYNTLISSFTS----HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG 120
P LY ++++++S H+S AFS + ++ +PN F +P + K+
Sbjct: 82 RFSFPNTHLYAAVLTAYSSSLPLHASS---AFSFFRLMVNRSVPRPNHFIYPLVLKSTPY 138
Query: 121 SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAK-YGRLCVSRCLFDQISEPDLATW 179
F P +H H+ K Y VQ +LL+ YA + ++R LFD++SE ++ +W
Sbjct: 139 LSSAFS-TPLVHTHLFKSGFHLYV-VVQTALLHSYASSVSHITLARQLFDEMSERNVVSW 196
Query: 180 NTLLXXXXXXXXXXXXXXL-EDA------------------DLSLEALYLFCDM-QMSRR 219
+L L ED L LEA+ LF M
Sbjct: 197 TAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSI 256
Query: 220 RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQ 279
RPNEVT+V ++SAC+ G L H + R +L + FV +LVD+Y KCG L A
Sbjct: 257 RPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASS 316
Query: 280 LFDQLTDRDTFCYNAMI 296
+F + + +N+MI
Sbjct: 317 VFKMASKKSLTAWNSMI 333
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A+ +F +P V +N ++++ T + + A SL+ R++ +++PN T + AC
Sbjct: 212 AVALFEDMPERDVPSWNAILAACTQNGLFLE-AVSLFRRMINEPSIRPNEVTVVCVLSAC 270
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
+G Q +HA + + D FV SL++ Y K G L + +F S+ L
Sbjct: 271 AQTGT-LQLAKGIHAFAYR-RDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTA 328
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM---QMSRRRPNEVTLVALISACSN 235
WN+++ S EA+ +F +M ++ +P+ +T + L++AC++
Sbjct: 329 WNSMINCFALHGR------------SEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTH 376
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCL 274
G +S+G Y +L NRF ++ Y GCL
Sbjct: 377 GGLVSKG---RGYF---DLMTNRFGIEPRIEHY---GCL 406
>AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:16290141-16292612
REVERSE LENGTH=823
Length = 823
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 145/292 (49%), Gaps = 41/292 (14%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY--------ALTIFSSI 66
L + C +L + K +HA+++ + + C IS+KL + Y A F I
Sbjct: 60 LFRYCTNLQSAKCLHARLVVSK-QIQNVC------ISAKLVNLYCYLGNVALARHTFDHI 112
Query: 67 PNPTVFLYNTLISSF--TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
N V+ +N +IS + +SS++ FSL+ + L P+ TFPS+ KAC
Sbjct: 113 QNRDVYAWNLMISGYGRAGNSSEVIRCFSLF---MLSSGLTPDYRTFPSVLKAC----RT 165
Query: 125 FQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLX 184
G +H LKF +D +V ASL++ Y++Y + +R LFD++ D+ +WN ++
Sbjct: 166 VIDGNKIHCLALKF-GFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 224
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
+ EAL L + R + VT+V+L+SAC+ G ++GV
Sbjct: 225 GYCQSGN------------AKEALTLSNGL----RAMDSVTVVSLLSACTEAGDFNRGVT 268
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H Y +++ L+ FV L+D+Y++ G L ++FD++ RD +N++I
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSII 320
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 34/284 (11%)
Query: 29 HAQMLTTGLALHTYCLSHLLT----ISSKLASTYA--------LTIFSSIPNPTVFLYNT 76
A G+ +H+Y + H L +S+KL YA +F + + +N+
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318
Query: 77 LISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVL 136
+I ++ + + A SL+ + + +QP+ T SL G + + L
Sbjct: 319 IIKAYELNEQPLR-AISLFQEMRLSR-IQPDCLTLISLASILSQLGD-IRACRSVQGFTL 375
Query: 137 K---FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
+ FLE D + +++ YAK G + +R +F+ + D+ +WNT++
Sbjct: 376 RKGWFLE---DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQN---- 428
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGVWTHCYLLRN 252
+ EA+ ++ M+ N+ T V+++ ACS GAL QG+ H LL+N
Sbjct: 429 --------GFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 480
Query: 253 NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L L+ FV T+L DMY KCG L A LF Q+ ++ +N +I
Sbjct: 481 GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLI 524
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 123/287 (42%), Gaps = 34/287 (11%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYA--------LTIFS 64
L L+ L+ L + A G L +TI + + YA +F+
Sbjct: 349 LTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFN 408
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
+PN V +NT+IS + + A +YN + + N T+ S+ AC +G
Sbjct: 409 WLPNTDVISWNTIISGYAQNGFASE-AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGAL 467
Query: 125 FQYGPPLHAHVLK---FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
Q G LH +LK +L D FV SL + Y K GRL + LF QI + WNT
Sbjct: 468 RQ-GMKLHGRLLKNGLYL----DVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNT 522
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
L+ +A+ LF +M +P+ +T V L+SACS+ G + +
Sbjct: 523 LIACHGFHGHGE------------KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDE 570
Query: 242 GVWTHCY-LLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQLT 285
G W C+ +++ + + + +VDMY + G L A + ++
Sbjct: 571 GQW--CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMS 615
>AT1G34160.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:12441393-12443225 FORWARD
LENGTH=581
Length = 581
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 138/295 (46%), Gaps = 36/295 (12%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLL---TISSKLASTYALTIFSSIPNPTV 71
++QKC S + +KQ+ + LT G ++ S LL IS ++A+ IF IP P
Sbjct: 9 MIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPLT 68
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPN---------SFTFPSLFKACCGSG 122
+N +I F SS LAFS Y +L + SFT + +A C S
Sbjct: 69 NDWNAIIRGFAG-SSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSA 127
Query: 123 HWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
LH + + D + +LL+ Y+K G L + LFD++ D+A+WN L
Sbjct: 128 M-----DQLHCQINR-RGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNAL 181
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ L + + EA+ L+ M+ R +EVT+VA + ACS+LG + +G
Sbjct: 182 IAG------------LVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEG 229
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC-YNAMI 296
+ N V A +DMYSKCG ++ A Q+F+Q T + + +N MI
Sbjct: 230 E----NIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMI 280
>AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr1:1721523-1723025
FORWARD LENGTH=500
Length = 500
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 35/270 (12%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFT-SHSSQIHL----------AFSLYNRILAHKTLQPN 107
AL + NP + +N S T S +S+I+L A + LA ++PN
Sbjct: 13 ALITHKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLA--GVEPN 70
Query: 108 SFTFPSLFKACCG--SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSR 165
TF +L C SG G LH + K V +++ Y+K GR +R
Sbjct: 71 HITFIALLSGCGDFTSGS-EALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKAR 129
Query: 166 CLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA----DL---------------SLE 206
+FD + + + TWNT++ + D DL E
Sbjct: 130 LVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEE 189
Query: 207 ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
AL F +MQ+S +P+ V ++A ++AC+NLGALS G+W H Y+L + K N V +L+D
Sbjct: 190 ALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLID 249
Query: 267 MYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+Y +CGC+ A Q+F + R +N++I
Sbjct: 250 LYCRCGCVEFARQVFYNMEKRTVVSWNSVI 279
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 19/228 (8%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F +P + + +I+ F Q L+ R + ++P+ + AC
Sbjct: 159 AAKMFDKMPERDLISWTAMINGFVKKGYQEEAL--LWFREMQISGVKPDYVAIIAALNAC 216
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G +G +H +VL + + V SL++ Y + G + +R +F + + + +
Sbjct: 217 TNLGA-LSFGLWVHRYVLS-QDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVS 274
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WN+++ E+L F MQ +P+ VT ++ACS++G
Sbjct: 275 WNSVIVGFAANGNAH------------ESLVYFRKMQEKGFKPDAVTFTGALTACSHVGL 322
Query: 239 LSQGVWTHCYLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQL 284
+ +G+ + +++ + +++ + LVD+YS+ G L A +L +
Sbjct: 323 VEEGL-RYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369
>AT2G40720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:16987269-16989851 FORWARD
LENGTH=860
Length = 860
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 138/275 (50%), Gaps = 21/275 (7%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFLYNTLISSFTSH 84
+Q+H ++ GL Y + LL++ SK A T+FS + + + ++N +++++ +
Sbjct: 292 RQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAEN 351
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEP-PY 143
+ A L+ + K++ P+SFT ++ +CC + YG +HA + K P
Sbjct: 352 DYG-YSALDLFG-FMRQKSVLPDSFTLSNVI-SCCSVLGLYNYGKSVHAELFK--RPIQS 406
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
++++LL Y+K G + +F + E D+ W +L+
Sbjct: 407 TSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFK---------- 456
Query: 204 SLEALYLFCDMQMSRR--RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
EAL +F DM+ +P+ + ++ +AC+ L AL G+ H +++ L LN FVG
Sbjct: 457 --EALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVG 514
Query: 262 TALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++L+D+YSKCG +A ++F ++ + +N+MI
Sbjct: 515 SSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMI 549
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 21/264 (7%)
Query: 19 CHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVFLY 74
C L L+ QVH M+ TGL L+ + S L+ + SK AL +F+S+ + +
Sbjct: 486 CAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAW 545
Query: 75 NTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAH 134
N++IS + S ++ L+ L+N +L+ P+S + S+ A + + G LH +
Sbjct: 546 NSMISCY-SRNNLPELSIDLFNLMLSQGIF-PDSVSITSVLVAISSTASLLK-GKSLHGY 602
Query: 135 VLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXX 194
L+ L P D ++ +L++ Y K G + +F ++ L TWN ++
Sbjct: 603 TLR-LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGD--- 658
Query: 195 XXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN-N 253
+ AL LF +M+ + P++VT ++LISAC++ G + +G ++ ++
Sbjct: 659 ---------CITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYG 709
Query: 254 LKLNRFVGTALVDMYSKCGCLNLA 277
++ N +VD+ + G L A
Sbjct: 710 IEPNMEHYANMVDLLGRAGLLEEA 733
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 24/216 (11%)
Query: 91 AFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQAS 150
A LY++ + FTFPSL KAC + YG +H V+ L YD F+ S
Sbjct: 43 ALHLYSKHDGSSPFWTSVFTFPSLLKACSALTN-LSYGKTIHGSVV-VLGWRYDPFIATS 100
Query: 151 LLNFYAKYGRLCVSRCLFD-------QISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
L+N Y K G L + +FD +S D+ WN+++
Sbjct: 101 LVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFK---------- 150
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGAL--SQGVWTHCYLLRNNLKLNRFVG 261
E + F M + RP+ +L ++S G +G H ++LRN+L + F+
Sbjct: 151 --EGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLK 208
Query: 262 TALVDMYSKCGCLNLACQLFDQLTDR-DTFCYNAMI 296
TAL+DMY K G A ++F ++ D+ + +N MI
Sbjct: 209 TALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMI 244
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 17/276 (6%)
Query: 23 NTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVFLYNTLISSF 81
N K VHA++ + + S LLT+ SK A +F S+ + + +LIS
Sbjct: 390 NYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGL 449
Query: 82 TSHSSQIHLAFSLYNRILAHK-TLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
+ + A ++ + +L+P+S S+ AC G ++G +H ++K
Sbjct: 450 CKNG-KFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGL-EALRFGLQVHGSMIK-TG 506
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
+ FV +SL++ Y+K G ++ +F +S ++ WN+++
Sbjct: 507 LVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNL--------- 557
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
+LS++ LF M P+ V++ +++ A S+ +L +G H Y LR + + +
Sbjct: 558 PELSID---LFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHL 614
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
AL+DMY KCG A +F ++ + +N MI
Sbjct: 615 KNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMI 650
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 136/309 (44%), Gaps = 42/309 (13%)
Query: 7 IFNHPILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTI 62
+F P LL+ C +L L K +H ++ G + + L+ + K YA+ +
Sbjct: 60 VFTFP--SLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQV 117
Query: 63 F-------SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
F S + V ++N++I + + + R+L ++P++F+ +
Sbjct: 118 FDGWSQSQSGVSARDVTVWNSMIDGYFKFR-RFKEGVGCFRRMLVF-GVRPDAFSLSIVV 175
Query: 116 KACCGSGHWF-QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
C G++ + G +H +L+ D F++ +L++ Y K+G + +F +I +
Sbjct: 176 SVMCKEGNFRREEGKQIHGFMLRN-SLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDK 234
Query: 175 -DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISAC 233
++ WN ++ + SL+ LY+ + N V LV+ S
Sbjct: 235 SNVVLWNVMIVGFGGSGI---------CESSLD-LYMLA-------KNNSVKLVS-TSFT 276
Query: 234 SNLGALSQ------GVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
LGA SQ G HC +++ L + +V T+L+ MYSKCG + A +F + D+
Sbjct: 277 GALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDK 336
Query: 288 DTFCYNAMI 296
+NAM+
Sbjct: 337 RLEIWNAMV 345
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 205 LEALYLFCDMQMSRRRPNEV-TLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
L+AL+L+ S V T +L+ ACS L LS G H ++ + + F+ T+
Sbjct: 41 LQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATS 100
Query: 264 LVDMYSKCGCLNLACQLFD-------QLTDRDTFCYNAMI 296
LV+MY KCG L+ A Q+FD ++ RD +N+MI
Sbjct: 101 LVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMI 140
>AT4G18520.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10215250-10217103 REVERSE
LENGTH=617
Length = 617
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 18/272 (6%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
+QVH M+ G+ + S L+ ++ T AL F + V + +IS+ +
Sbjct: 204 RQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRK 262
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
I A ++ +L H L PN FT S+ KAC ++G +H+ V+K + D
Sbjct: 263 GHGIK-AIGMFIGMLNHWFL-PNEFTVCSILKAC-SEEKALRFGRQVHSLVVKRM-IKTD 318
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
FV SL++ YAK G + R +FD +S + TW +++
Sbjct: 319 VFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAR------------EGFG 366
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
EA+ LF M+ N +T+V+++ AC ++GAL G H +++N+++ N ++G+ L
Sbjct: 367 EEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTL 426
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
V +Y KCG A + QL RD + AMI
Sbjct: 427 VWLYCKCGESRDAFNVLQQLPSRDVVSWTAMI 458
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 17/282 (6%)
Query: 16 LQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLY 74
LQ + + +K++HA L Y ++L++ +L YA +F S+P +
Sbjct: 92 LQSSNGMRLIKRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTW 151
Query: 75 NTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAH 134
+I + + + AF+L+ + H N F L C F+ G +H +
Sbjct: 152 TAMIDGYLKYGLEDE-AFALFEDYVKHGIRFTNERMFVCLLNLCSRRAE-FELGRQVHGN 209
Query: 135 VLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXX 194
++K + V++SL+ FYA+ G L + FD + E D+ +W ++
Sbjct: 210 MVKV--GVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGH--- 264
Query: 195 XXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNL 254
++A+ +F M PNE T+ +++ ACS AL G H +++ +
Sbjct: 265 ---------GIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMI 315
Query: 255 KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
K + FVGT+L+DMY+KCG ++ ++FD +++R+T + ++I
Sbjct: 316 KTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSII 357
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 128/287 (44%), Gaps = 17/287 (5%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNP 69
ILK + +L +QVH+ ++ + + + L+ + +K + +F + N
Sbjct: 289 SILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNR 348
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
+ ++I++ A SL+ RI+ + L N+ T S+ +AC GS G
Sbjct: 349 NTVTWTSIIAAHAREGFG-EEAISLF-RIMKRRHLIANNLTVVSILRAC-GSVGALLLGK 405
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
LHA ++K + ++ ++L+ Y K G + + Q+ D+ +W ++
Sbjct: 406 ELHAQIIKN-SIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSL 464
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
EAL +M PN T + + AC+N +L G H
Sbjct: 465 GHES------------EALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIA 512
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+N+ N FVG+AL+ MY+KCG ++ A ++FD + +++ + AMI
Sbjct: 513 KKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMI 559
>AT5G16860.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:5543834-5546386 FORWARD
LENGTH=850
Length = 850
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 152/290 (52%), Gaps = 29/290 (10%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIP--NPTV 71
+ KC +++ +K +H ++L+ G+ L SHL++ + ++A+++ P + V
Sbjct: 34 FIHKCKTISQVKLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGV 92
Query: 72 FLYNTLISSFTSH--SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
+ +N+LI S+ + +++ F L + + + P+++TFP +FKAC G + G
Sbjct: 93 YHWNSLIRSYGDNGCANKCLYLFGLMHSL----SWTPDNYTFPFVFKAC-GEISSVRCGE 147
Query: 130 PLHAH--VLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
HA V F+ + FV +L+ Y++ L +R +FD++S D+ +WN+++
Sbjct: 148 SAHALSLVTGFIS---NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYA 204
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGVWTH 246
L ++LE +F M RP+ +TLV ++ C++LG S G H
Sbjct: 205 K---------LGKPKVALE---MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLH 252
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
C+ + + + N FVG LVDMY+KCG ++ A +F ++ +D +NAM+
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMV 302
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 140/319 (43%), Gaps = 36/319 (11%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+ K + S+ + HA L TG + + + L+ + S+ S + A +F +
Sbjct: 133 VFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWD 192
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +N++I S+ + + +A +++R+ +P++ T ++ C G G
Sbjct: 193 VVSWNSIIESY-AKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT-HSLGKQ 250
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH + E + FV L++ YAK G + + +F +S D+ +WN ++
Sbjct: 251 LHCFAVTS-EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309
Query: 191 XXXXXXXLEDA-----------------------DLSLEALYLFCDMQMSRRRPNEVTLV 227
L + L EAL + M S +PNEVTL+
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369
Query: 228 ALISACSNLGALSQGVWTHCYLLRNNLKLNR-------FVGTALVDMYSKCGCLNLACQL 280
+++S C+++GAL G HCY ++ + L + V L+DMY+KC ++ A +
Sbjct: 370 SVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAM 429
Query: 281 FDQLT--DRDTFCYNAMIG 297
FD L+ +RD + MIG
Sbjct: 430 FDSLSPKERDVVTWTVMIG 448
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 144/338 (42%), Gaps = 65/338 (19%)
Query: 9 NHPILKLLQKCHSLNT---LKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFS 64
N ++ +L C SL T KQ+H +T+ + + + + L+ + +K A T+FS
Sbjct: 229 NITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFS 288
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKT--------------------- 103
++ V +N +++ + S + A L+ ++ K
Sbjct: 289 NMSVKDVVSWNAMVAGY-SQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGY 347
Query: 104 -------------LQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD------ 144
++PN T S+ C G +G +H + +K+ P D
Sbjct: 348 EALGVCRQMLSSGIKPNEVTLISVLSGCASVGA-LMHGKEIHCYAIKY---PIDLRKNGH 403
Query: 145 ---HFVQASLLNFYAKYGRLCVSRCLFDQIS--EPDLATWNTLLXXXXXXXXXXXXXXLE 199
+ V L++ YAK ++ +R +FD +S E D+ TW ++
Sbjct: 404 GDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG--------- 454
Query: 200 DADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLK-LNR 258
DA+ +LE L + + + RPN T+ + AC++L AL G H Y LRN +
Sbjct: 455 DANKALELLSEMFE-EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPL 513
Query: 259 FVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
FV L+DMY+KCG ++ A +FD + ++ + +++
Sbjct: 514 FVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLM 551
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 35/291 (12%)
Query: 12 ILKLLQKCHSLNTL---KQVH-------AQMLTTGLALHTYCLSHLLTISSKLAST-YAL 60
++ +L C S+ L K++H + G ++ L+ + +K A
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTAR 427
Query: 61 TIFSSI--PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHK-TLQPNSFTFPSLFKA 117
+F S+ V + +I ++ H + A L + + +PN+FT A
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDA-NKALELLSEMFEEDCQTRPNAFTISCALVA 486
Query: 118 CCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
C S + G +HA+ L+ + FV L++ YAK G + +R +FD + +
Sbjct: 487 C-ASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEV 545
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
TW +L+ EAL +F +M+ + + VTL+ ++ ACS+ G
Sbjct: 546 TWTSLMTGYGMH------------GYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSG 593
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVG----TALVDMYSKCGCLNLACQLFDQL 284
+ QG+ Y R G LVD+ + G LN A +L +++
Sbjct: 594 MIDQGME---YFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEM 641
>AT5G56310.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:22802322-22803914 FORWARD
LENGTH=530
Length = 530
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 41/308 (13%)
Query: 20 HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLI 78
++L TLKQ H M+ TGL ++ + S YA ++F+ P P +L+NT+I
Sbjct: 26 NNLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMI 85
Query: 79 SSFT------SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFK-ACCGSGHWFQYGPPL 131
+ + +HS +A ++Y ++ A +P++FTFP + K A S WF G +
Sbjct: 86 RALSLLDEPNAHS----IAITVYRKLWA-LCAKPDTFTFPFVLKIAVRVSDVWF--GRQI 138
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
H V+ F H V L+ Y G L +R +FD++ D+ WN LL
Sbjct: 139 HGQVVVFGFDSSVHVVTG-LIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGE 197
Query: 192 XXXXXXL---------------------EDADLSLEALYLFCDMQMSRRRPNEVTLVALI 230
L + + EA+ +F M M P+EVTL+A++
Sbjct: 198 MDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVL 257
Query: 231 SACSNLGALSQGVWTHCYLLRNNLKLNRFV--GTALVDMYSKCGCLNLACQLFDQLTDRD 288
SAC++LG+L G Y+ ++ +NR V A++DMY+K G + A +F+ + +R+
Sbjct: 258 SACADLGSLELGERICSYV--DHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERN 315
Query: 289 TFCYNAMI 296
+ +I
Sbjct: 316 VVTWTTII 323
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 76 TLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHV 135
T + S + S + A ++ R+L + ++P+ T ++ AC G + G + ++V
Sbjct: 219 TCVISGYAKSGRASEAIEVFQRMLM-ENVEPDEVTLLAVLSACADLGS-LELGERICSYV 276
Query: 136 LKFLEPPYDHF-------VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
DH + ++++ YAK G + + +F+ ++E ++ TW T++
Sbjct: 277 --------DHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAG--- 325
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
L EAL +F M + RPN+VT +A++SACS++G + G
Sbjct: 326 ---------LATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLG 370
>AT5G44230.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:17814336-17816309 FORWARD
LENGTH=657
Length = 657
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 36/321 (11%)
Query: 4 QNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA---STYAL 60
Q + ++ L C +LN +KQ+H +L GL Y L+ L+ +KL YA
Sbjct: 44 QKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYAR 103
Query: 61 TIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG 120
+ + FL+ +I + + + A ++Y + + + P SFTF +L KA CG
Sbjct: 104 RVIEPVQFRNPFLWTAVIRGY-AIEGKFDEAIAMYG-CMRKEEITPVSFTFSALLKA-CG 160
Query: 121 SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
+ G HA + + +V ++++ Y K + +R +FD++ E D+ +W
Sbjct: 161 TMKDLNLGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWT 219
Query: 181 TLLXXXXXXXXXXXXXXLEDA----DLSL---------------EALYLFCDMQMSRRRP 221
L+ L ++ D+ EAL F M+ S R
Sbjct: 220 ELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRA 279
Query: 222 NEVTLVALISACSNLGALS------QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLN 275
+EVT+ ISAC+ LGA Q Y +++ +G+AL+DMYSKCG +
Sbjct: 280 DEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHV----VIGSALIDMYSKCGNVE 335
Query: 276 LACQLFDQLTDRDTFCYNAMI 296
A +F + +++ F Y++MI
Sbjct: 336 EAVNVFMSMNNKNVFTYSSMI 356
>AT2G13600.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:5671493-5673586 FORWARD
LENGTH=697
Length = 697
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 149/297 (50%), Gaps = 27/297 (9%)
Query: 5 NPIF-NHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTI 62
N IF + ++ KC SL +QV +M + Y + ++T +KL A ++
Sbjct: 53 NEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNI----YTWNSVVTGLTKLGFLDEADSL 108
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
F S+P +N+++S F H + A Y ++ + N ++F S+ AC G
Sbjct: 109 FRSMPERDQCTWNSMVSGFAQHD-RCEEAL-CYFAMMHKEGFVLNEYSFASVLSACSGLN 166
Query: 123 HWFQYGPPLHAHVLKFLEPPY--DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
G +H+ + K P+ D ++ ++L++ Y+K G + ++ +FD++ + ++ +WN
Sbjct: 167 D-MNKGVQVHSLIAK---SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWN 222
Query: 181 TLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS 240
+L+ E ++EAL +F M SR P+EVTL ++ISAC++L A+
Sbjct: 223 SLITC------------FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270
Query: 241 QGVWTHCYLLRNN-LKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G H +++N+ L+ + + A VDMY+KC + A +FD + R+ +MI
Sbjct: 271 VGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMI 327
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 138/323 (42%), Gaps = 56/323 (17%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
+L C LN + QVH+ + + Y S L+ + SK + A +F + +
Sbjct: 158 VLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRN 217
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +N+LI+ F + + A ++ +L + ++P+ T S+ AC S + G
Sbjct: 218 VVSWNSLITCFEQNGPAVE-ALDVFQMMLESR-VEPDEVTLASVISACA-SLSAIKVGQE 274
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFD--------------------- 169
+H V+K + D + + ++ YAK R+ +R +FD
Sbjct: 275 VHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAA 334
Query: 170 ----------QISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR 219
+++E ++ +WN L+ EAL LFC ++
Sbjct: 335 STKAARLMFTKMAERNVVSWNALIAGYTQNGENE------------EALSLFCLLKRESV 382
Query: 220 RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNR------FVGTALVDMYSKCGC 273
P + ++ AC++L L G+ H ++L++ K FVG +L+DMY KCGC
Sbjct: 383 CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 274 LNLACQLFDQLTDRDTFCYNAMI 296
+ +F ++ +RD +NAMI
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMI 465
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 122/284 (42%), Gaps = 24/284 (8%)
Query: 7 IFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSI 66
I ++ + + KC + + + M + T +S +S A A +F+ +
Sbjct: 290 ILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA---ARLMFTKM 346
Query: 67 PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQ 126
V +N LI+ +T + A SL+ +L +++ P ++F ++ KAC
Sbjct: 347 AERNVVSWNALIAGYTQNGEN-EEALSLFC-LLKRESVCPTHYSFANILKACADLAE-LH 403
Query: 127 YGPPLHAHVLK----FLEPPYDH-FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
G H HVLK F D FV SL++ Y K G + +F ++ E D +WN
Sbjct: 404 LGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNA 463
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
++ EAL LF +M S +P+ +T++ ++SAC + G + +
Sbjct: 464 MIIGFAQNGYGN------------EALELFREMLESGEKPDHITMIGVLSACGHAGFVEE 511
Query: 242 GVWTHCYLLRN-NLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
G + R+ + R T +VD+ + G L A + +++
Sbjct: 512 GRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555
>AT4G38010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:17859582-17861261 REVERSE
LENGTH=559
Length = 559
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 135/289 (46%), Gaps = 24/289 (8%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA--STYALTIFSSIPNP 69
+L+L+ +C SL KQ+ Q++T L ++ ++T K A ++Y+ I SI +
Sbjct: 9 LLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSV 68
Query: 70 -TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
+ F YNTL+SS+ F+ + P+ FTFP +FKA CG + G
Sbjct: 69 LSSFSYNTLLSSYAVCDKPRVTIFAY--KTFVSNGFSPDMFTFPPVFKA-CGKFSGIREG 125
Query: 129 PPLHAHVLKFLEPPYDH-FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
+H V K YD +VQ SL++FY G + +F ++ D+ +W ++
Sbjct: 126 KQIHGIVTKM--GFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGII---- 179
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
L EAL F M + PN T V ++ + +G LS G H
Sbjct: 180 --------TGFTRTGLYKEALDTFSKMDV---EPNLATYVCVLVSSGRVGCLSLGKGIHG 228
Query: 248 YLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L+ ++ G AL+DMY KC L+ A ++F +L +D +N+MI
Sbjct: 229 LILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMI 277
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 25/291 (8%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYC---LSHLLTISSKLASTYALTIFSSIP 67
P+ K K + KQ+H + G Y L H + + S A +F +P
Sbjct: 111 PVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGE--SRNACKVFGEMP 168
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
V + +I+ FT + A ++++ ++PN T+ + G
Sbjct: 169 VRDVVSWTGIITGFT-RTGLYKEALDTFSKM----DVEPNLATYVCVL-VSSGRVGCLSL 222
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G +H +LK A L++ Y K +L + +F ++ + D +WN+++
Sbjct: 223 GKGIHGLILKRASLISLETGNA-LIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISG-- 279
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGVWTH 246
L + S EA+ LF MQ S +P+ L +++SAC++LGA+ G W H
Sbjct: 280 ----------LVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVH 329
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
Y+L +K + +GTA+VDMY+KCG + A ++F+ + ++ F +NA++G
Sbjct: 330 EYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLG 380
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A+ +F + +N++IS H + A L++ + ++P+ S+ AC
Sbjct: 258 AMRVFGELEKKDKVSWNSMISGLV-HCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSAC 316
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G +G +H ++L +D + ++++ YAK G + + +F+ I ++ T
Sbjct: 317 ASLGA-VDHGRWVHEYILT-AGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFT 374
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WN LL LE+L F +M +PN VT +A ++AC + G
Sbjct: 375 WNALLGGLAIHGH------------GLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGL 422
Query: 239 LSQG 242
+ +G
Sbjct: 423 VDEG 426
>AT4G04370.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:2134060-2136249 REVERSE
LENGTH=729
Length = 729
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 139/281 (49%), Gaps = 24/281 (8%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYA-LTIFSSIPNPTVFLYNTLIS 79
L + +H Q++ TG + + + L+T+ K A + +IPN V + +IS
Sbjct: 260 DLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMIS 319
Query: 80 SFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF- 138
+ A +++ +L + +S S+ +C G F G +H +VL+
Sbjct: 320 GLM-RLGRAEKALIVFSEMLQSGS-DLSSEAIASVVASCAQLGS-FDLGASVHGYVLRHG 376
Query: 139 --LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXX 196
L+ P SL+ YAK G L S +F++++E DL +WN ++
Sbjct: 377 YTLDTP----ALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYA--------- 423
Query: 197 XLEDADLSLEALYLFCDMQM-SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLK 255
++ DL +AL LF +M+ + ++ + T+V+L+ ACS+ GAL G HC ++R+ ++
Sbjct: 424 --QNVDLC-KALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIR 480
Query: 256 LNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
V TALVDMYSKCG L A + FD ++ +D + +I
Sbjct: 481 PCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILI 521
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 20/233 (8%)
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGH 123
SS+ N T + +N+ I+ +SH + S ++ +LA+K L P++FTFPSL KAC S
Sbjct: 5 SSVLNSTKY-FNSHINHLSSHGDHKQV-LSTFSSMLANKLL-PDTFTFPSLLKAC-ASLQ 60
Query: 124 WFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
+G +H VL D ++ +SL+N YAK+G L +R +F+++ E D+ W ++
Sbjct: 61 RLSFGLSIHQQVL-VNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMI 119
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
A + EA L +M+ +P VTL+ ++S + L
Sbjct: 120 GCYSR------------AGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQLQ--- 164
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H + + + V +++++Y KC + A LFDQ+ RD +N MI
Sbjct: 165 CLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMI 217
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 23/286 (8%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
LL+ C SL L +H Q+L G + Y S L+ + +K +A +F +
Sbjct: 52 LLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERD 111
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V + +I + S + + A SL N + + ++P T L + G Q
Sbjct: 112 VVHWTAMIGCY-SRAGIVGEACSLVNE-MRFQGIKPGPVT---LLEMLSGVLEITQL-QC 165
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH + + D V S+LN Y K + ++ LFDQ+ + D+ +WNT++
Sbjct: 166 LHDFAVIY-GFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASV- 223
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
++S E L L M+ RP++ T A +S + L G HC ++
Sbjct: 224 ----------GNMS-EILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIV 272
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ ++ + TAL+ MY KCG + ++ + + ++D C+ MI
Sbjct: 273 KTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMI 318
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 119/257 (46%), Gaps = 21/257 (8%)
Query: 1 MKAQNPIFNHPILKLLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLAS- 56
+++ + + + I ++ C L + VH +L G L T L+ L+T+ +K
Sbjct: 338 LQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHL 397
Query: 57 TYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFK 116
+L IF + + +N +IS + + + + A L+ + Q +SFT SL +
Sbjct: 398 DKSLVIFERMNERDLVSWNAIISGY-AQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQ 456
Query: 117 ACCGSGHWFQYGPPLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD 175
AC +G G +H V++ F+ P V +L++ Y+K G L ++ FD IS D
Sbjct: 457 ACSSAGA-LPVGKLIHCIVIRSFIRPC--SLVDTALVDMYSKCGYLEAAQRCFDSISWKD 513
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
+ +W L+ D++LE ++ + S PN V +A++S+CS+
Sbjct: 514 VVSWGILIAGYGFHGK---------GDIALE---IYSEFLHSGMEPNHVIFLAVLSSCSH 561
Query: 236 LGALSQGVWTHCYLLRN 252
G + QG+ ++R+
Sbjct: 562 NGMVQQGLKIFSSMVRD 578
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%)
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALV 265
+ L F M ++ P+ T +L+ AC++L LS G+ H +L N + ++ ++LV
Sbjct: 29 QVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLV 88
Query: 266 DMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
++Y+K G L A ++F+++ +RD + AMIG
Sbjct: 89 NLYAKFGLLAHARKVFEEMRERDVVHWTAMIG 120
>AT4G20770.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:11130762-11133086 REVERSE
LENGTH=774
Length = 774
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 20/238 (8%)
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYN-RILAHKTLQPNSFTFPSLFKACCG 120
IFSSIP P+V +N ++S ++++ H ++ N R + + L+P+ T S+ + C
Sbjct: 372 IFSSIPQPSVSAWNAMLSGYSNYE---HYEEAISNFRQMQFQNLKPDKTTL-SVILSSCA 427
Query: 121 SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQ-ISEPDLATW 179
+ + G +H V++ H V + L+ Y++ ++ +S C+FD I+E D+A W
Sbjct: 428 RLRFLEGGKQIHGVVIRTEISKNSHIV-SGLIAVYSECEKMEISECIFDDCINELDIACW 486
Query: 180 NTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGA 238
N+++ L +AL LF M Q + PNE + ++S+CS L +
Sbjct: 487 NSMISGFRHNM------------LDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCS 534
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L G H ++++ + FV TAL DMY KCG ++ A Q FD + ++T +N MI
Sbjct: 535 LLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMI 592
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D + + L F K G L + +FD + E D+ +WN ++ L
Sbjct: 71 DVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISV------------LVRKGF 118
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
+AL ++ M P+ TL +++SACS + G+ H ++ L N FVG A
Sbjct: 119 EEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNA 178
Query: 264 LVDMYSKCG-CLNLACQLFDQLTDRDTFCYNAMIG 297
L+ MY+KCG ++ ++F+ L+ + Y A+IG
Sbjct: 179 LLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIG 213
>AT2G01510.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:230752-232506 REVERSE
LENGTH=584
Length = 584
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 131/295 (44%), Gaps = 18/295 (6%)
Query: 4 QNPIFNHPILKLLQKCHSL-NTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALT 61
Q P+ + +LL+ S LK++HA +L TG + L+ LL + YA
Sbjct: 5 QTPLTKQMLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQ 64
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F + P +FL+NTL + + Q+ L + + ++P+ FT+P + KA
Sbjct: 65 VFDEMHKPRIFLWNTLFKGYVRN--QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQL 122
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
G F G LHAHV+K+ V L+ Y K+G L + LF+ + DL WN
Sbjct: 123 GD-FSCGFALHAHVVKYGFGCLG-IVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNA 180
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
L S AL F M + + T+V+++SAC LG+L
Sbjct: 181 FLAVCVQTGN------------SAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEI 228
Query: 242 GVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G + + + N V A +DM+ KCG A LF+++ R+ ++ MI
Sbjct: 229 GEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMI 283
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 136/296 (45%), Gaps = 22/296 (7%)
Query: 8 FNHP-ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSS 65
F +P ++K + + + +HA ++ G + L+ + K + A +F S
Sbjct: 110 FTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFES 169
Query: 66 IPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF 125
+ + +N ++ + +A +N++ A +Q +SFT S+ AC G
Sbjct: 170 MQVKDLVAWNAFLA-VCVQTGNSAIALEYFNKMCAD-AVQFDSFTVVSMLSACGQLGS-L 226
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
+ G ++ K E + V+ + L+ + K G +R LF+++ + ++ +W+T++
Sbjct: 227 EIGEEIYDRARK-EEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVG 285
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
+ D S EAL LF MQ RPN VT + ++SACS+ G +++G
Sbjct: 286 YAM-----------NGD-SREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRY 333
Query: 246 HCYLLRN---NLKLNRFVGTALVDMYSKCGCLNLACQLFDQL-TDRDTFCYNAMIG 297
++++ NL+ + +VD+ + G L A + ++ + DT + A++G
Sbjct: 334 FSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLG 389
>AT3G09040.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2761195-2764281 REVERSE
LENGTH=1028
Length = 1028
Score = 103 bits (256), Expect = 2e-22, Method: Composition-based stats.
Identities = 75/271 (27%), Positives = 131/271 (48%), Gaps = 17/271 (6%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLASTYALT-IFSSIPNPTVFLYNTLISSFTSHSS 86
VHA+ + GLA + Y S L+++ SK A +F ++ +N +I + +H+
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGY-AHNG 407
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHF 146
+ H L+ + + FTF SL C S H + G H+ ++K + + F
Sbjct: 408 ESHKVMELFMD-MKSSGYNIDDFTFTSLLSTCAAS-HDLEMGSQFHSIIIK-KKLAKNLF 464
Query: 147 VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLE 206
V +L++ YAK G L +R +F+++ + D TWNT++ ++D + S E
Sbjct: 465 VGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSY-----------VQDENES-E 512
Query: 207 ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
A LF M + + L + + AC+++ L QG HC ++ L + G++L+D
Sbjct: 513 AFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLID 572
Query: 267 MYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
MYSKCG + A ++F L + NA+I
Sbjct: 573 MYSKCGIIKDARKVFSSLPEWSVVSMNALIA 603
Score = 86.7 bits (213), Expect = 2e-17, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 16/239 (6%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F + +P V +N +IS + +N + +++ T S+ A
Sbjct: 280 ARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFN--MRKSSVKSTRSTLGSVLSAI 337
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G G +HA +K L + +V +SL++ Y+K ++ + +F+ + E +
Sbjct: 338 -GIVANLDLGLVVHAEAIK-LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVF 395
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WN ++ S + + LF DM+ S ++ T +L+S C+
Sbjct: 396 WNAMIRGYAHNGE------------SHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHD 443
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
L G H +++ L N FVG ALVDMY+KCG L A Q+F+++ DRD +N +IG
Sbjct: 444 LEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIG 502
Score = 85.1 bits (209), Expect = 5e-17, Method: Composition-based stats.
Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 19/287 (6%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTV 71
LK H L KQVH + GL + S L+ + SK A +FSS+P +V
Sbjct: 536 LKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSV 595
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
N LI+ ++ ++ + A L+ +L + + P+ TF ++ +AC G
Sbjct: 596 VSMNALIAGYSQNN--LEEAVVLFQEMLT-RGVNPSEITFATIVEAC-HKPESLTLGTQF 651
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP-DLATWNTLLXXXXXXX 190
H + K ++ SLL Y + + LF ++S P + W ++
Sbjct: 652 HGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNG 711
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
EAL + +M+ P++ T V ++ CS L +L +G H +
Sbjct: 712 FYE------------EALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIF 759
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR-DTFCYNAMI 296
L+ L+DMY+KCG + + Q+FD++ R + +N++I
Sbjct: 760 HLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLI 806
Score = 77.0 bits (188), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 52/272 (19%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
+Q+H M+ GL ++YC L+ + +K + A +F I +P + L S +
Sbjct: 180 RQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYV-- 237
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
K P +F+ GH P D
Sbjct: 238 -----------------KAGLPEEAVL--VFERMRDEGH----------------RP--D 260
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
H +++N Y + G+L +R LF ++S PD+ WN ++
Sbjct: 261 HLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETV---------- 310
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
A+ F +M+ S + TL +++SA + L G+ H ++ L N +VG++L
Sbjct: 311 --AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
V MYSKC + A ++F+ L +++ +NAMI
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDVFWNAMI 400
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 13/146 (8%)
Query: 150 SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALY 209
++++ YAK ++ + FD + E D+ WN++L + L
Sbjct: 100 AIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPG------------KVLR 146
Query: 210 LFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYS 269
F + ++ PN+ T ++S C+ + G HC +++ L+ N + G ALVDMY+
Sbjct: 147 SFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYA 206
Query: 270 KCGCLNLACQLFDQLTDRDTFCYNAM 295
KC ++ A ++F+ + D +T C+ +
Sbjct: 207 KCDRISDARRVFEWIVDPNTVCWTCL 232
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 21/234 (8%)
Query: 15 LLQKCH---SLNTLKQVHAQMLTTGLALHTYCL--SHLLTISSKLASTYALTIFSSIPNP 69
+++ CH SL Q H Q+ G + L S L + T A +FS + +P
Sbjct: 635 IVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSP 694
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
+ T + S S + A Y + H + P+ TF ++ + C + G
Sbjct: 695 KSIVLWTGMMSGHSQNGFYEEALKFYKE-MRHDGVLPDQATFVTVLRVCSVLSS-LREGR 752
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISE-PDLATWNTLLXXXXX 188
+H+ + L D +L++ YAK G + S +FD++ ++ +WN+L+
Sbjct: 753 AIHSLIFH-LAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAK 811
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ +AL +F M+ S P+E+T + +++ACS+ G +S G
Sbjct: 812 N------------GYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDG 853
>AT1G77170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:28998133-28999536 REVERSE
LENGTH=467
Length = 467
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 45/290 (15%)
Query: 9 NHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPN 68
N + LL C SL ++++H + S++ Y
Sbjct: 47 NKLLATLLSNCTSLARVRRIHGDIF-----------------RSRILDQY---------- 79
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
P FL+N ++ S+ H S + A +Y ++ T+ P+ ++ P + KA H F G
Sbjct: 80 PIAFLWNNIMRSYIRHESPLD-AIQVYLGMV-RSTVLPDRYSLPIVIKAAV-QIHDFTLG 136
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
LH+ ++ L D F ++ + Y K G +R +FD+ E L +WN ++
Sbjct: 137 KELHSVAVR-LGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGG--- 192
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
L A + EA+ +F DM+ S P++ T+V++ ++C LG LS H
Sbjct: 193 ---------LNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKC 243
Query: 249 LL--RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L + K + + +L+DMY KCG ++LA +F+++ R+ +++MI
Sbjct: 244 VLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMI 293
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 130/277 (46%), Gaps = 20/277 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
++K + H K++H+ + G +C S +T+ K A +F P
Sbjct: 123 VIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERK 182
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ +N +I +H+ + + A ++ + L+P+ FT S+ +C G G
Sbjct: 183 LGSWNAIIGGL-NHAGRANEAVEMFVD-MKRSGLEPDDFTMVSVTASCGGLGD-LSLAFQ 239
Query: 131 LHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
LH VL+ E D + SL++ Y K GR+ ++ +F+++ + ++ +W++++
Sbjct: 240 LHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAAN 299
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
+LEAL F M+ RPN++T V ++SAC + G + +G T+ +
Sbjct: 300 GN------------TLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGK-TYFAM 346
Query: 250 LRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQL 284
+++ +L + +VD+ S+ G L A ++ +++
Sbjct: 347 MKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEM 383
>AT3G23330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:8347200-8349347 FORWARD
LENGTH=715
Length = 715
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 16/235 (6%)
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F +P V YNT+I+ + + S A + R + L+P+SFT S+
Sbjct: 198 VFEVMPRKDVVSYNTIIAGY-AQSGMYEDALRMV-REMGTTDLKPDSFTLSSVLPIFSEY 255
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
+ G +H +V++ D ++ +SL++ YAK R+ S +F ++ D +WN+
Sbjct: 256 VDVIK-GKEIHGYVIR-KGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNS 313
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
L+ EAL LF M ++ +P V ++I AC++L L
Sbjct: 314 LVAGYVQNGRYN------------EALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361
Query: 242 GVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G H Y+LR N F+ +ALVDMYSKCG + A ++FD++ D + A+I
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 123/262 (46%), Gaps = 20/262 (7%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSH 84
K++H ++ G+ Y S L+ + +K A + +FS + +N+L++ +
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYV-Q 320
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ + + A L+ +++ K ++P + F S+ AC G LH +VL+ +
Sbjct: 321 NGRYNEALRLFRQMVTAK-VKPGAVAFSSVIPACAHLAT-LHLGKQLHGYVLRG-GFGSN 377
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
F+ ++L++ Y+K G + +R +FD+++ D +W ++
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGH----------- 426
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG--T 262
EA+ LF +M+ +PN+V VA+++ACS++G + + W + + LN+ +
Sbjct: 427 -EAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE-AWGYFNSMTKVYGLNQELEHYA 484
Query: 263 ALVDMYSKCGCLNLACQLFDQL 284
A+ D+ + G L A ++
Sbjct: 485 AVADLLGRAGKLEEAYNFISKM 506
>AT4G13650.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:7939611-7942898 REVERSE
LENGTH=1064
Length = 1064
Score = 102 bits (254), Expect = 3e-22, Method: Composition-based stats.
Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 17/287 (5%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+L +K SL +Q+H +L G + TY + L+++ L + A IFS++
Sbjct: 294 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 353
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
YNTLI+ S A L+ R + L+P+S T SL AC G F+ G
Sbjct: 354 AVTYNTLINGL-SQCGYGEKAMELFKR-MHLDGLEPDSNTLASLVVACSADGTLFR-GQQ 410
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LHA+ K L ++ ++ +LLN YAK + + F + ++ WN +L
Sbjct: 411 LHAYTTK-LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGL-- 467
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
L+D S +F MQ+ PN+ T +++ C LG L G H ++
Sbjct: 468 -------LDDLRNSFR---IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+ N +LN +V + L+DMY+K G L+ A + + +D + MI
Sbjct: 518 KTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 564
Score = 96.7 bits (239), Expect = 2e-20, Method: Composition-based stats.
Identities = 83/302 (27%), Positives = 139/302 (46%), Gaps = 37/302 (12%)
Query: 9 NHPILK-LLQKC----HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY----- 58
NH LK LL+ C SL+ +++H+Q+L GL + CLS KL Y
Sbjct: 83 NHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNG-CLSE------KLFDFYLFKGD 135
Query: 59 ---ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
A +F +P T+F +N +I S + I F L+ R+++ + + PN TF +
Sbjct: 136 LYGAFKVFDEMPERTIFTWNKMIKELASRN-LIGEVFGLFVRMVS-ENVTPNEGTFSGVL 193
Query: 116 KACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQAS-LLNFYAKYGRLCVSRCLFDQISEP 174
+AC G F +HA +L + D V + L++ Y++ G + ++R +FD +
Sbjct: 194 EACRGGSVAFDVVEQIHARIL--YQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 251
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
D ++W ++ L + EA+ LFCDM + P +++SAC
Sbjct: 252 DHSSWVAMISG------------LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACK 299
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNA 294
+ +L G H +L+ + +V ALV +Y G L A +F ++ RD YN
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359
Query: 295 MI 296
+I
Sbjct: 360 LI 361
Score = 70.5 bits (171), Expect = 1e-12, Method: Composition-based stats.
Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 22/293 (7%)
Query: 8 FNHP-ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSS 65
+ +P ILK + L +Q+H+Q++ T L+ Y S L+ + +KL A I
Sbjct: 491 YTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIR 550
Query: 66 IPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF 125
V + T+I+ +T ++ A + + ++L + ++ + + AC G
Sbjct: 551 FAGKDVVSWTTMIAGYTQYNFD-DKALTTFRQML-DRGIRSDEVGLTNAVSACAGL-QAL 607
Query: 126 QYGPPLHAH--VLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
+ G +HA V F D Q +L+ Y++ G++ S F+Q D WN L+
Sbjct: 608 KEGQQIHAQACVSGF---SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 664
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
+ + + EAL +F M N T + + A S + QG
Sbjct: 665 SG------------FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGK 712
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H + + V AL+ MY+KCG ++ A + F +++ ++ +NA+I
Sbjct: 713 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 765
Score = 64.7 bits (156), Expect = 7e-11, Method: Composition-based stats.
Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 39/280 (13%)
Query: 19 CHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISS---KLASTYALTIFSSIPNPTVF 72
C L LK Q+HAQ +G + + L+T+ S K+ +Y F
Sbjct: 601 CAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY--LAFEQTEAGDNI 658
Query: 73 LYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLH 132
+N L+S F S A ++ R + + + N+FTF S KA + + Q G +H
Sbjct: 659 AWNALVSGF-QQSGNNEEALRVFVR-MNREGIDNNNFTFGSAVKAASETANMKQ-GKQVH 715
Query: 133 AHVLKFLEPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
A + K YD + +L++ YAK G + + F ++S + +WN ++
Sbjct: 716 AVITK---TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAY---- 768
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
EAL F M S RPN VTLV ++SACS++G + +G+ Y
Sbjct: 769 --------SKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI---AYFE 817
Query: 251 RNNL------KLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
N K +V +VDM ++ G L+ A + ++
Sbjct: 818 SMNSEYGLSPKPEHYV--CVVDMLTRAGLLSRAKEFIQEM 855
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 101 HKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGR 160
++ ++PN T L + C + G LH+ +LK L + + L +FY G
Sbjct: 77 NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK-LGLDSNGCLSEKLFDFYLFKGD 135
Query: 161 LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRR 220
L + +FD++ E + TWN ++ L +L E LF M
Sbjct: 136 LYGAFKVFDEMPERTIFTWNKMI------------KELASRNLIGEVFGLFVRMVSENVT 183
Query: 221 PNEVTLVALISACSNLGALSQGV--WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLAC 278
PNE T ++ AC G+++ V H +L L+ + V L+D+YS+ G ++LA
Sbjct: 184 PNEGTFSGVLEACRG-GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 242
Query: 279 QLFDQLTDRDTFCYNAMI 296
++FD L +D + AMI
Sbjct: 243 RVFDGLRLKDHSSWVAMI 260
>AT3G25970.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:9500116-9502221 REVERSE
LENGTH=701
Length = 701
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 142/300 (47%), Gaps = 39/300 (13%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYA--------LTI 62
P+L LL N LKQVHA++L GL H +TI + + S+YA +
Sbjct: 208 PLLTLLDDPMFCNLLKQVHAKVLKLGL-------QHEITICNAMISSYADCGSVSDAKRV 260
Query: 63 FSSIPNPTVFL-YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
F + + +N++I+ F+ H + AF L+ ++ H ++ + +T+ L AC G
Sbjct: 261 FDGLGGSKDLISWNSMIAGFSKHELK-ESAFELFIQMQRH-WVETDIYTYTGLLSACSGE 318
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQAS--LLNFYAKY--GRLCVSRCLFDQISEPDLA 177
H +G LH V+K + A+ L++ Y ++ G + + LF+ + DL
Sbjct: 319 EHQI-FGKSLHGMVIK---KGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLI 374
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
+WN+++ LS +A+ F ++ S + ++ AL+ +CS+L
Sbjct: 375 SWNSIITG------------FAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLA 422
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR-DTFCYNAMI 296
L G H ++ N FV ++L+ MYSKCG + A + F Q++ + T +NAMI
Sbjct: 423 TLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMI 482
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D +V +L+ Y K+G L + LFD++ + D +WNT++ LEDA
Sbjct: 34 DIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK------LEDA-- 85
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
LF M+ S + + L+ +++ G H +++ + N +VG++
Sbjct: 86 ----WCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSS 141
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
LVDMY+KC + A + F ++++ ++ +NA+I
Sbjct: 142 LVDMYAKCERVEDAFEAFKEISEPNSVSWNALI 174
>AT1G06140.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:1864796-1866472 FORWARD
LENGTH=558
Length = 558
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 19/285 (6%)
Query: 16 LQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTV 71
++ C L L+ +H + GL Y L+ + ++L + A +F IP
Sbjct: 116 IKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNS 175
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
L+ L+ + +S + F L+ ++ L ++ T L KAC G+ + G +
Sbjct: 176 VLWGVLMKGYLKYSKDPEV-FRLFC-LMRDTGLALDALTLICLVKAC-GNVFAGKVGKCV 232
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
H ++ ++QAS+++ Y K L +R LF+ + ++ W TL+
Sbjct: 233 HGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISG------ 286
Query: 192 XXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLR 251
+ ++EA LF M PN+ TL A++ +CS+LG+L G H Y++R
Sbjct: 287 ------FAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIR 340
Query: 252 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
N ++++ T+ +DMY++CG + +A +FD + +R+ +++MI
Sbjct: 341 NGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMI 385
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 30/297 (10%)
Query: 10 HPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTI---SSKLASTYALTIFSSI 66
+L +L + +LN +QVHA+++ G S L S++L +A + F+ I
Sbjct: 8 RALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRL--DFATSSFNRI 65
Query: 67 P--NPTVFLYNTLISSFTSHS----SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG 120
P +NT++S ++ S + L LYNR+ H +SF KAC G
Sbjct: 66 PCWKRNRHSWNTILSGYSKSKTCCYSDVLL---LYNRMRRHCD-GVDSFNLVFAIKACVG 121
Query: 121 SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
G + G +H +K D +V SL+ YA+ G + ++ +FD+I + W
Sbjct: 122 LG-LLENGILIHGLAMKN-GLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWG 179
Query: 181 TLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS 240
L+ E LFC M+ + + +TL+ L+ AC N+ A
Sbjct: 180 VLMKGYLKYSK------------DPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGK 227
Query: 241 QGVWTHCYLLRNN-LKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G H +R + + + ++ +++DMY KC L+ A +LF+ DR+ + +I
Sbjct: 228 VGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLI 284
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F + + V ++ TLIS F + AF L+ ++L +++ PN T ++ +C
Sbjct: 265 ARKLFETSVDRNVVMWTTLISGFAKCERAVE-AFDLFRQML-RESILPNQCTLAAILVSC 322
Query: 119 CGSGHWFQYGPPLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
G ++G +H ++++ +E +F S ++ YA+ G + ++R +FD + E ++
Sbjct: 323 SSLGS-LRHGKSVHGYMIRNGIEMDAVNFT--SFIDMYARCGNIQMARTVFDMMPERNVI 379
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
+W++++ L EAL F M+ PN VT V+L+SACS+ G
Sbjct: 380 SWSSMINAFGIN------------GLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSG 427
Query: 238 ALSQG 242
+ +G
Sbjct: 428 NVKEG 432
>AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10304850-10307465 FORWARD
LENGTH=871
Length = 871
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 133/281 (47%), Gaps = 31/281 (11%)
Query: 30 AQMLTTGLALHTY----CLSH-------LLTISSKLAS-TYALTIFSSIPNPTVFLYNTL 77
+++++ G A+H+ C S LL + SK A +F + + +V Y ++
Sbjct: 309 SRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSM 368
Query: 78 ISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK 137
I+ + + A L+ + + + P+ +T ++ CC G +H + K
Sbjct: 369 IAGY-AREGLAGEAVKLFEE-MEEEGISPDVYTVTAVLN-CCARYRLLDEGKRVHEWI-K 424
Query: 138 FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXX 197
+ +D FV +L++ YAK G + + +F ++ D+ +WNT++
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN---- 480
Query: 198 LEDADLSLEALYLFCDMQMSRRR--PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLK 255
EAL LF ++ + +R P+E T+ ++ AC++L A +G H Y++RN
Sbjct: 481 --------EALSLF-NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531
Query: 256 LNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+R V +LVDMY+KCG L LA LFD + +D + MI
Sbjct: 532 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 572
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 132/287 (45%), Gaps = 17/287 (5%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPT 70
+ K S++ +Q+H +L +G + L+ K A +F +
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD 260
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +N++I+ + S+ S++ ++L ++ + T S+F C S G
Sbjct: 261 VISWNSIINGYVSNG-LAEKGLSVFVQMLV-SGIEIDLATIVSVFAGCADS-RLISLGRA 317
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
+H+ +K D F +LL+ Y+K G L ++ +F ++S+ + ++ +++
Sbjct: 318 VHSIGVKACFSREDRFCN-TLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR-- 374
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
L+ EA+ LF +M+ P+ T+ A+++ C+ L +G H ++
Sbjct: 375 ----------EGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
N+L + FV AL+DMY+KCG + A +F ++ +D +N +IG
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIG 471
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 23/268 (8%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISS 80
L+ K+VH + L + + L+ + +K S A +FS + + +NT+I
Sbjct: 413 LDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 472
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
+ S + + A SL+N +L K P+ T + AC S F G +H ++++
Sbjct: 473 Y-SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA-SLSAFDKGREIHGYIMR--- 527
Query: 141 PPY--DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
Y D V SL++ YAK G L ++ LFD I+ DL +W ++
Sbjct: 528 NGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHG-------- 579
Query: 199 EDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNR 258
EA+ LF M+ + +E++ V+L+ ACS+ G + +G W ++R+ K+
Sbjct: 580 ----FGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKIEP 634
Query: 259 FVG--TALVDMYSKCGCLNLACQLFDQL 284
V +VDM ++ G L A + + +
Sbjct: 635 TVEHYACIVDMLARTGDLIKAYRFIENM 662
>AT2G33680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:14249608-14251791 FORWARD
LENGTH=727
Length = 727
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 137/275 (49%), Gaps = 23/275 (8%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
+Q+H + GL + L+T+ SK S A +F S + ++ +++ ++ +
Sbjct: 241 RQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQN 300
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC---CGSGHWFQYGPPLHAHVLKFLEP 141
+ A L++R+ + ++P+ +T + AC C + + G LH+ +LK L
Sbjct: 301 GESLE-AVKLFSRMFS-AGIKPSEYTIVGVLNACSDIC----YLEEGKQLHSFLLK-LGF 353
Query: 142 PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
F +L++ YAK G L +R FD + E D+A W +L+ ++++
Sbjct: 354 ERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGY-----------VQNS 402
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
D + EAL L+ M+ + PN+ T+ +++ ACS+L L G H + +++ L +G
Sbjct: 403 D-NEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIG 461
Query: 262 TALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+AL MYSKCG L +F + ++D +NAMI
Sbjct: 462 SALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMI 496
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 21/302 (6%)
Query: 1 MKAQNPIFNH----PILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA- 55
M+AQ+ + N I K S +Q HA ++ Y + L+ + K
Sbjct: 109 MRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGL 168
Query: 56 STYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNS-FTFPSL 114
L +F+ +P + ++T++S + + ++ A ++N L K +S + F ++
Sbjct: 169 VEDGLKVFAYMPERNTYTWSTMVSGYATRG-RVEEAIKVFNLFLREKEEGSDSDYVFTAV 227
Query: 115 FKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
+ + + G +H +K + A L+ Y+K L + +FD +
Sbjct: 228 LSSLAAT-IYVGLGRQIHCITIKNGLLGFVALSNA-LVTMYSKCESLNEACKMFDSSGDR 285
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
+ TW+ ++ SLEA+ LF M + +P+E T+V +++ACS
Sbjct: 286 NSITWSAMVTGYSQNGE------------SLEAVKLFSRMFSAGIKPSEYTIVGVLNACS 333
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNA 294
++ L +G H +LL+ + + F TALVDMY+K GCL A + FD L +RD + +
Sbjct: 334 DICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTS 393
Query: 295 MI 296
+I
Sbjct: 394 LI 395
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 128/276 (46%), Gaps = 20/276 (7%)
Query: 26 KQVHAQMLTTGLAL---HTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFT 82
+ VH Q++ TG + H L + KLA + +IF++I V +N+LI+ ++
Sbjct: 34 RAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH--SIFNAIICKDVVSWNSLITGYS 91
Query: 83 SHS--SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
+ S + L+ + A L PN++T +FKA S G HA V+K +
Sbjct: 92 QNGGISSSYTVMQLFREMRAQDIL-PNAYTLAGIFKAES-SLQSSTVGRQAHALVVK-MS 148
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
D +V SL+ Y K G + +F + E + TW+T++ +E+
Sbjct: 149 SFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMV------SGYATRGRVEE 202
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
A ++ LF + ++ A++S+ + + G HC ++N L +
Sbjct: 203 A---IKVFNLFL-REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVAL 258
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
ALV MYSKC LN AC++FD DR++ ++AM+
Sbjct: 259 SNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMV 294
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 29/283 (10%)
Query: 9 NHPILKLLQKCHS---LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFS 64
+ I+ +L C L KQ+H+ +L G H + + L+ + +K A F
Sbjct: 322 EYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFD 381
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
+ V L+ +LIS + +S A LY R+ + PN T S+ KAC S
Sbjct: 382 CLQERDVALWTSLISGYVQNSDN-EEALILYRRMKTAGII-PNDPTMASVLKACS-SLAT 438
Query: 125 FQYGPPLHAHVLKF---LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
+ G +H H +K LE P + ++L Y+K G L +F + D+ +WN
Sbjct: 439 LELGKQVHGHTIKHGFGLEVP----IGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNA 494
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
++ L EAL LF +M P++VT V +ISACS+ G + +
Sbjct: 495 MISG------------LSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVER 542
Query: 242 GVWTHCYLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFD 282
G W + ++ + + L+ V +VD+ S+ G L A + +
Sbjct: 543 G-WFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIE 584
>AT3G15930.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:5387444-5389690 FORWARD
LENGTH=687
Length = 687
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 136/287 (47%), Gaps = 18/287 (6%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALH-TYCLSHLLTISSKLAS--TYALTIFSSIPNP 69
+ +L C + + KQ+H+Q +T G+A + T+ + S+L +YA +F IP P
Sbjct: 38 ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
V ++N +I ++ LY +L + + P+S TFP L G G
Sbjct: 98 DVVVWNNMIKGWSKVDCDGE-GVRLYLNML-KEGVTPDSHTFPFLLNGLKRDGGALACGK 155
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
LH HV+KF + +VQ +L+ Y+ G + ++R +FD+ + D+ +WN ++
Sbjct: 156 KLHCHVVKF-GLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRM 214
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
E++ L +M+ + P VTL+ ++SACS + H Y+
Sbjct: 215 KEYE------------ESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYV 262
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ + + ALV+ Y+ CG +++A ++F + RD + +++
Sbjct: 263 SECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIV 309
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 12/147 (8%)
Query: 150 SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALY 209
S++ Y + G L ++R FDQ+ D +W ++ A E+L
Sbjct: 307 SIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLR------------AGCFNESLE 354
Query: 210 LFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYS 269
+F +MQ + P+E T+V++++AC++LG+L G W Y+ +N +K + VG AL+DMY
Sbjct: 355 IFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYF 414
Query: 270 KCGCLNLACQLFDQLTDRDTFCYNAMI 296
KCGC A ++F + RD F + AM+
Sbjct: 415 KCGCSEKAQKVFHDMDQRDKFTWTAMV 441
>AT3G50420.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:18710871-18713649 REVERSE
LENGTH=794
Length = 794
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 142/292 (48%), Gaps = 22/292 (7%)
Query: 12 ILKLLQKCHSLNTLK---QVHAQMLTTGLALHT---YCLSHLLTISSKLAS-TYALTIFS 64
+++L +KC S+ LK Q+HA +LT G T Y ++L+++ + S A +F
Sbjct: 97 VVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFD 156
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
+P+ V YN L S+++ + AF L +A + ++PNS TF SL + C
Sbjct: 157 KMPHRNVVSYNALYSAYSRNPDFASYAFPLTTH-MAFEYVKPNSSTFTSLVQVCAVLEDV 215
Query: 125 FQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLX 184
G L++ ++K L + VQ S+L Y+ G L +R +FD ++ D WNT++
Sbjct: 216 LM-GSSLNSQIIK-LGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIV 273
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
+ED L F +M MS P + T +++ CS LG+ S G
Sbjct: 274 GSLKNDK------IEDG------LMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKL 321
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++ ++ + + AL+DMY CG + A +F ++ + + +N++I
Sbjct: 322 IHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSII 373
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 15/239 (6%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F I NP + +N++IS S + A +Y R+L T +P+ +TF + A
Sbjct: 354 AFYVFGRIHNPNLVSWNSIISG-CSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISAT 412
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
F +G LH V K L FV +LL+ Y K ++ +FD + E D+
Sbjct: 413 A-EPERFVHGKLLHGQVTK-LGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVL 470
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
W ++ L +++L A+ F +M + R + +L ++I ACS++
Sbjct: 471 WTEMIVGHSR---------LGNSEL---AVQFFIEMYREKNRSDGFSLSSVIGACSDMAM 518
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
L QG HC +R V ALVDMY K G A +F ++ D C+N+M+G
Sbjct: 519 LRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLG 577
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSK-LASTYALTIFSSIPNPTVFLYNTLISSFTSH 84
K +H Q+ G + + LL++ K + A +F + V L+ +I S
Sbjct: 422 KLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGH-SR 480
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
LA + + K + + F+ S+ AC Q G H ++ +D
Sbjct: 481 LGNSELAVQFFIEMYREKN-RSDGFSLSSVIGACSDMAMLRQ-GEVFHCLAIR---TGFD 535
Query: 145 --HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDAD 202
V +L++ Y K G+ + +F S PDL WN++L
Sbjct: 536 CVMSVCGALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQH------------G 583
Query: 203 LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
+ +AL F + + P+ VT ++L++ACS+ G+ QG + + +K +
Sbjct: 584 MVEKALSFFEQILENGFMPDAVTYLSLLAACSHRGSTLQGKFLWNQMKEQGIKAGFKHYS 643
Query: 263 ALVDMYSKCGCLNLACQLFDQ 283
+V++ SK G ++ A +L +Q
Sbjct: 644 CMVNLVSKAGLVDEALELIEQ 664
>AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor 20 |
chr3:6543699-6545117 REVERSE LENGTH=472
Length = 472
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 135/295 (45%), Gaps = 28/295 (9%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTG---------LALHTYCLSHLLTISSKLASTYALTIFSS 65
L Q +L KQ+HAQ++ G L H YC SSKLA L +F
Sbjct: 14 LQQNSKTLIQAKQIHAQLVINGCHDNSLFGKLIGH-YCSKPSTESSSKLAH---LLVFPR 69
Query: 66 IPNPTVFLYNTLIS-SFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
+P FL+NTL+ S S +I ++ + +L L +F F A S
Sbjct: 70 FGHPDKFLFNTLLKCSKPEDSIRIFANYASKSSLL---YLNERTFVFVLGACARSASSSA 126
Query: 125 FQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLX 184
+ G +H V K + +LL+FYAK G L +R +FD++ E TWN ++
Sbjct: 127 LRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIG 186
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQ--MSRRRPNEVTLVALISACSNLGALSQG 242
+ +A+ LF S RP + T+V ++SA S G L G
Sbjct: 187 GYCSHKDKGNHN-------ARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIG 239
Query: 243 VWTHCYLLRNNL--KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
H Y+ + +++ F+GTALVDMYSKCGCLN A +F+ + ++ F + +M
Sbjct: 240 SLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSM 294
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 28/223 (12%)
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQ----IHLAFSLYNRI-LAHKTLQPNSFTFP 112
YA +F +P T +N +I + SH + A L+ R ++P T
Sbjct: 165 YARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMV 224
Query: 113 SLFKACCGSGHWFQYGPPLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQI 171
+ A +G + G +H ++ K P D F+ +L++ Y+K G L + +F+ +
Sbjct: 225 CVLSAISQTG-LLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELM 283
Query: 172 SEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALIS 231
++ TW ++ L E L M S +PNE+T +L+S
Sbjct: 284 KVKNVFTWTSM------------ATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLS 331
Query: 232 ACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCL 274
A ++G + +G+ L ++K RF T +++ Y GC+
Sbjct: 332 AYRHIGLVEEGIE-----LFKSMK-TRFGVTPVIEHY---GCI 365
>AT3G03580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:860695-863343 REVERSE
LENGTH=882
Length = 882
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 18/287 (6%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSI-PNP 69
I + L +LN L+++HA +++ GL + L+ S +L++F + P
Sbjct: 10 ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
V+L+N++I +F S + A Y ++ K + P+ +TFPS+ KAC G + G
Sbjct: 70 NVYLWNSIIRAF-SKNGLFPEALEFYGKLRESK-VSPDKYTFPSVIKACAGLFD-AEMGD 126
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
++ +L + D FV +L++ Y++ G L +R +FD++ DL +WN+L+
Sbjct: 127 LVYEQILD-MGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSH 185
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
EAL ++ +++ S P+ T+ +++ A NL + QG H +
Sbjct: 186 GYYE------------EALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFA 233
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L++ + V LV MY K A ++FD++ RD+ YN MI
Sbjct: 234 LKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMI 280
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 20/286 (6%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
+L+ C L L K ++ ML G L + + L+ + +K A +F+S+
Sbjct: 313 VLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKD 372
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+N++IS + S + A L+ ++ + Q + T+ L ++G
Sbjct: 373 TVSWNSIISGYI-QSGDLMEAMKLFKMMMIMEE-QADHITYLMLISVSTRLAD-LKFGKG 429
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH++ +K D V +L++ YAK G + S +F + D TWNT++
Sbjct: 430 LHSNGIKS-GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRF- 487
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
D + L + M+ S P+ T + + C++L A G HC LL
Sbjct: 488 ----------GDFAT-GLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLL 536
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
R + +G AL++MYSKCGCL + ++F++++ RD + MI
Sbjct: 537 RFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMI 582
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 131/270 (48%), Gaps = 18/270 (6%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHSS 86
V+ Q+L G + + L+ + S++ T A +F +P + +N+LIS ++SH
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHG- 186
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHF 146
A +Y+ L + + P+SFT S+ A G+ + G LH LK
Sbjct: 187 YYEEALEIYHE-LKNSWIVPDSFTVSSVLPAF-GNLLVVKQGQGLHGFALKSGVNSV-VV 243
Query: 147 VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLE 206
V L+ Y K+ R +R +FD++ D ++NT++ ++ E
Sbjct: 244 VNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKL------------EMVEE 291
Query: 207 ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
++ +F + + + +P+ +T+ +++ AC +L LS + + Y+L+ L V L+D
Sbjct: 292 SVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILID 350
Query: 267 MYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+Y+KCG + A +F+ + +DT +N++I
Sbjct: 351 VYAKCGDMITARDVFNSMECKDTVSWNSII 380
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 27/224 (12%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISS---F 81
K +H+ + +G+ + + L+ + +K +L IFSS+ +NT+IS+ F
Sbjct: 428 KGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRF 487
Query: 82 TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEP 141
++ + + + + P+ TF C S + G +H +L+F
Sbjct: 488 GDFATGLQVTTQMRK-----SEVVPDMATFLVTL-PMCASLAAKRLGKEIHCCLLRF--- 538
Query: 142 PYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLE 199
Y+ +Q +L+ Y+K G L S +F+++S D+ TW ++
Sbjct: 539 GYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGE------ 592
Query: 200 DADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
+AL F DM+ S P+ V +A+I ACS+ G + +G+
Sbjct: 593 ------KALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGL 630
>AT3G51320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:19049853-19051445 REVERSE
LENGTH=530
Length = 530
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 38/310 (12%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTV 71
KL++ +S+ L QVHA+++T+G + LL SS+ S+Y ++I+ SI +
Sbjct: 26 FKLVEDSNSITHLFQVHARLITSGNFWDSSWAIRLLKSSSRFGDSSYTVSIYRSIGK--L 83
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF----KACCGSGHWFQY 127
+ N + ++ SS A Y IL + P+S+TF SL K CC
Sbjct: 84 YCANPVFKAYLVSSSPKQ-ALGFYFDILRFGFV-PDSYTFVSLISCIEKTCC-----VDS 136
Query: 128 GPPLHAHVLKFLEPPYDHF--VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
G H +K D VQ SL++ Y G L +++ LF +I + D+ +WN+++
Sbjct: 137 GKMCHGQAIKH---GCDQVLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAG 193
Query: 186 XXXXXXXXXXXXLED-------------------ADLSLEALYLFCDMQMSRRRPNEVTL 226
L D A+ ++ LF +M + + NE TL
Sbjct: 194 MVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTL 253
Query: 227 VALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTD 286
V L++AC L +G H L+R L + + TAL+DMY KC + LA ++FD L+
Sbjct: 254 VLLLNACGRSARLKEGRSVHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSI 313
Query: 287 RDTFCYNAMI 296
R+ +N MI
Sbjct: 314 RNKVTWNVMI 323
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 117/274 (42%), Gaps = 24/274 (8%)
Query: 19 CHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLI 78
C +L+ K++ ++ + ++ ++ LA A +F +P+ + +N +I
Sbjct: 166 CGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLA---AHKLFDEMPDKNIISWNIMI 222
Query: 79 SSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK- 137
S++ ++ ++ SL+ R + Q N T L AC G + G +HA +++
Sbjct: 223 SAYLG-ANNPGVSISLF-REMVRAGFQGNESTLVLLLNAC-GRSARLKEGRSVHASLIRT 279
Query: 138 FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXX 197
FL + +L++ Y K + ++R +FD +S + TWN ++
Sbjct: 280 FLNSSV--VIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEG--- 334
Query: 198 LEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLN 257
L LF M RP+EVT V ++ C+ G +SQG ++ L+ + ++
Sbjct: 335 ---------GLELFEAMINGMLRPDEVTFVGVLCGCARAGLVSQG-QSYYSLMVDEFQIK 384
Query: 258 RFVGTA--LVDMYSKCGCLNLACQLFDQLTDRDT 289
G + ++YS G A + L D D
Sbjct: 385 PNFGHQWCMANLYSSAGFPEEAEEALKNLPDEDV 418
>AT3G53360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:19784502-19786808 FORWARD
LENGTH=768
Length = 768
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 18/280 (6%)
Query: 20 HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLI 78
SL +++H +L + T +H+L++ K S A +F +P + Y ++I
Sbjct: 81 RSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVI 140
Query: 79 SSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF 138
+ + S + Q A LY ++L + L P+ F F S+ KAC S G LHA V+K
Sbjct: 141 TGY-SQNGQGAEAIRLYLKML-QEDLVPDQFAFGSIIKACASSSD-VGLGKQLHAQVIK- 196
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
LE Q +L+ Y ++ ++ + +F I DL +W++++
Sbjct: 197 LESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAG------------F 244
Query: 199 EDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLN 257
EAL +M PNE + + ACS+L G H +++ L N
Sbjct: 245 SQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGN 304
Query: 258 RFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
G +L DMY++CG LN A ++FDQ+ DT +N +I
Sbjct: 305 AIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIA 344
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 126/272 (46%), Gaps = 30/272 (11%)
Query: 27 QVHAQMLTTGLALHTYCLS----HLLTISSKLASTYAL--------TIFSSIPNPTVFL- 73
Q L+ G+ +H+Y + LT+ + L + Y +F N +
Sbjct: 381 QTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVS 440
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+NT++++ H + + L+ +L + +P+ T +L + C + G +H
Sbjct: 441 WNTILTACLQHEQPVEM-LRLFKLMLVSEC-EPDHITMGNLLRGCVEISS-LKLGSQVHC 497
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
+ LK P + F++ L++ YAK G L +R +FD + D+ +W+TL+
Sbjct: 498 YSLKTGLAP-EQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYA------ 550
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL-LRN 252
+ EAL LF +M+ + PN VT V +++ACS++G + +G+ + + +
Sbjct: 551 ------QSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEH 604
Query: 253 NLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+ + + +VD+ ++ G LN A + D++
Sbjct: 605 GISPTKEHCSCVVDLLARAGRLNEAERFIDEM 636
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 21/241 (8%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F I P +N +I+ +++ A S+++++ + + P++ + SL A
Sbjct: 324 ARRVFDQIERPDTASWNVIIAGL-ANNGYADEAVSVFSQMRSSGFI-PDAISLRSLLCAQ 381
Query: 119 CGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRL-CVSRCLFDQISEPD 175
Q G +H++++K FL D V SLL Y L C D + D
Sbjct: 382 TKPMALSQ-GMQIHSYIIKWGFLA---DLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNAD 437
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
+WNT+L + +E L LF M +S P+ +T+ L+ C
Sbjct: 438 SVSWNTILTACLQH------------EQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVE 485
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
+ +L G HCY L+ L +F+ L+DMY+KCG L A ++FD + +RD ++ +
Sbjct: 486 ISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTL 545
Query: 296 I 296
I
Sbjct: 546 I 546
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
LL+ C +++LK QVH L TGLA + + L+ + +K S A IF S+ N
Sbjct: 479 LLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRD 538
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V ++TLI + + S A L+ + ++PN TF + AC G + G
Sbjct: 539 VVSWSTLIVGY-AQSGFGEEALILFKE-MKSAGIEPNHVTFVGVLTACSHVG-LVEEGLK 595
Query: 131 LHA--HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS-EPDLATWNTLL 183
L+A + P +H + +++ A+ GRL + D++ EPD+ W TLL
Sbjct: 596 LYATMQTEHGISPTKEHC--SCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLL 649
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 225 TLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
T ++LI ACS+ +L+QG H ++L +N K + + ++ MY KCG L A ++FD +
Sbjct: 69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128
Query: 285 TDRDTFCYNAMI 296
+R+ Y ++I
Sbjct: 129 PERNLVSYTSVI 140
>AT1G64310.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23866053-23867711 FORWARD
LENGTH=552
Length = 552
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 17/273 (6%)
Query: 25 LKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVFLYNTLISSFTS 83
L+ +H + +GL C S ++ SK A +F SIP+P + L+N +I +
Sbjct: 125 LRCIHGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGC 184
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
+L+N ++ H+ QPN +T +L +HA LK +
Sbjct: 185 -CGFWDKGINLFN-LMQHRGHQPNCYTMVALTSGLIDPS-LLLVAWSVHAFCLK-INLDS 240
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
+V +L+N Y++ + + +F+ ISEPDL ++L+
Sbjct: 241 HSYVGCALVNMYSRCMCIASACSVFNSISEPDLVACSSLITGYSRCGNHK---------- 290
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
EAL+LF +++MS ++P+ V + ++ +C+ L G H Y++R L+L+ V +A
Sbjct: 291 --EALHLFAELRMSGKKPDCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSA 348
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L+DMYSKCG L A LF + +++ +N++I
Sbjct: 349 LIDMYSKCGLLKCAMSLFAGIPEKNIVSFNSLI 381
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 135/284 (47%), Gaps = 34/284 (11%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALT--------IFSSIPNPTVFL 73
LNT +++H+ + + LA Y +++LA YAL +F P +VFL
Sbjct: 22 LNT-QKLHSFVTKSKLARDPY-------FATQLARFYALNDDLISARKLFDVFPERSVFL 73
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+N++I ++ + + Q SL+++IL T +P++FT+ L + G F
Sbjct: 74 WNSIIRAY-AKAHQFTTVLSLFSQILRSDT-RPDNFTYACLAR---GFSESFDTKGLRCI 128
Query: 134 HVLKFLEP-PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXX 192
H + + +D ++++ Y+K G + + LF I +PDLA WN ++
Sbjct: 129 HGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCCGFW 188
Query: 193 XXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN 252
+ + LF MQ +PN T+VAL S + L H + L+
Sbjct: 189 D------------KGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKI 236
Query: 253 NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
NL + +VG ALV+MYS+C C+ AC +F+ +++ D +++I
Sbjct: 237 NLDSHSYVGCALVNMYSRCMCIASACSVFNSISEPDLVACSSLI 280
>AT1G71460.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:26928247-26930316 REVERSE
LENGTH=689
Length = 689
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 126/289 (43%), Gaps = 21/289 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPT 70
+ K +L + HA + GL + + L+ + K A +F I
Sbjct: 220 VFKSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEIVERD 279
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ ++ +I+ +H+ + A L+ +++ + + PNS ++ G + G
Sbjct: 280 IVVWGAMIAGL-AHNKRQWEALGLFRTMISEEKIYPNSVILTTIL-PVLGDVKALKLGKE 337
Query: 131 LHAHVLK---FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
+HAHVLK ++E P FV + L++ Y K G + R +F + + +W L+
Sbjct: 338 VHAHVLKSKNYVEQP---FVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISWTALMSGYA 394
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
+AL MQ RP+ VT+ ++ C+ L A+ QG HC
Sbjct: 395 ANGRFD------------QALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHC 442
Query: 248 YLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
Y L+N N + T+L+ MYSKCG +LFD+L R+ + AMI
Sbjct: 443 YALKNLFLPNVSLVTSLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAMI 491
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 99 LAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHV-LKFLEPPYDHFVQASLLNFYAK 157
L + + N+ TF +L +AC +G +H H+ + LE + F++ L++ Y
Sbjct: 102 LEQRGIPVNATTFSALLEACVRRKSLL-HGKQVHVHIRINGLES--NEFLRTKLVHMYTA 158
Query: 158 YGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMS 217
G + ++ +FD+ + ++ +WN LL + + L F +M+
Sbjct: 159 CGSVKDAQKVFDESTSSNVYSWNALLRGTV----------ISGKKRYQDVLSTFTEMREL 208
Query: 218 RRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLA 277
N +L + + + AL QG+ TH ++N L + F+ T+LVDMY KCG + LA
Sbjct: 209 GVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVGLA 268
Query: 278 CQLFDQLTDRDTFCYNAMIG 297
++FD++ +RD + AMI
Sbjct: 269 RRVFDEIVERDIVVWGAMIA 288
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 18/294 (6%)
Query: 5 NPIFNHPILKLLQKCHSLNTLKQVHAQMLTT-GLALHTYCLSHLLTISSKLAS-TYALTI 62
N + IL +L +L K+VHA +L + + S L+ + K +
Sbjct: 315 NSVILTTILPVLGDVKALKLGKEVHAHVLKSKNYVEQPFVHSGLIDLYCKCGDMASGRRV 374
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
F + L+S + ++ S+ + + +P+ T ++ C
Sbjct: 375 FYGSKQRNAISWTALMSGYAANGRFDQALRSIV--WMQQEGFRPDVVTIATVL-PVCAEL 431
Query: 123 HWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
+ G +H + LK L P V SL+ Y+K G LFD++ + ++ W +
Sbjct: 432 RAIKQGKEIHCYALKNLFLPNVSLV-TSLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAM 490
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ +E+ DL + +F M +S+ RP+ VT+ +++ CS+L AL G
Sbjct: 491 IDCY-----------VENCDLR-AGIEVFRLMLLSKHRPDSVTMGRVLTVCSDLKALKLG 538
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++L+ + FV ++ MY KCG L A FD + + + + A+I
Sbjct: 539 KELHGHILKKEFESIPFVSARIIKMYGKCGDLRSANFSFDAVAVKGSLTWTAII 592
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 110/284 (38%), Gaps = 41/284 (14%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST------------YA 59
I +L C L +KQ G +H Y L +L + L ++ Y
Sbjct: 421 IATVLPVCAELRAIKQ--------GKEIHCYALKNLFLPNVSLVTSLMVMYSKCGVPEYP 472
Query: 60 LTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC 119
+ +F + V + +I + + + ++ +L K +P+S T + C
Sbjct: 473 IRLFDRLEQRNVKAWTAMIDCYV-ENCDLRAGIEVFRLMLLSKH-RPDSVTMGRVL-TVC 529
Query: 120 GSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
+ G LH H+LK F P FV A ++ Y K G L + FD ++
Sbjct: 530 SDLKALKLGKELHGHILKKEFESIP---FVSARIIKMYGKCGDLRSANFSFDAVAVKGSL 586
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
TW ++ +L +A+ F M PN T A++S CS G
Sbjct: 587 TWTAIIEAYGCN------------ELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAG 634
Query: 238 ALSQGVWTHCYLLRN-NLKLNRFVGTALVDMYSKCGCLNLACQL 280
+ + +LR NL+ + + ++++ ++CG + A +L
Sbjct: 635 FVDEAYRFFNLMLRMYNLQPSEEHYSLVIELLNRCGRVEEAQRL 678
>AT5G50390.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:20520789-20522980 REVERSE
LENGTH=701
Length = 701
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 20/287 (6%)
Query: 15 LLQKC---HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
L++ C S+ +K+V+ M++ G Y ++ +L + K A +F IP
Sbjct: 129 LVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERN 188
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
++ Y ++IS F + + + AF L+ +++ + + TF + +A G G + G
Sbjct: 189 LYSYYSIISGFVNFGNYVE-AFELF-KMMWEELSDCETHTFAVMLRASAGLGSIY-VGKQ 245
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH LK L + FV L++ Y+K G + +RC F+ + E WN ++
Sbjct: 246 LHVCALK-LGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALH- 303
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
S EAL L DM+ S ++ TL +I + L L H L+
Sbjct: 304 -----------GYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLI 352
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
RN + TALVD YSK G ++ A +FD+L ++ +NA++G
Sbjct: 353 RNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMG 399
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 21/225 (9%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLIS 79
S+ KQ+H L G+ +T+ L+ + SK A F +P T +N +I+
Sbjct: 239 SIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIA 298
Query: 80 SFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFL 139
+ H LY+ + + + FT + + + HA +++
Sbjct: 299 GYALHGYSEEALCLLYD--MRDSGVSIDQFTLSIMIRISTKLAK-LELTKQAHASLIR-- 353
Query: 140 EPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXX 197
++ + A +L++FY+K+GR+ +R +FD++ ++ +WN L+
Sbjct: 354 -NGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYA---------- 402
Query: 198 LEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ +A+ LF M + PN VT +A++SAC+ G QG
Sbjct: 403 --NHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQG 445
>AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:1181560-1183452 FORWARD
LENGTH=630
Length = 630
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 139/290 (47%), Gaps = 29/290 (10%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFL 73
+L+ C+ ++ ++ +H ++ GL + S L+ + +KL AL++F + +
Sbjct: 168 VLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIV 227
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+N++I F + +S+ +A L+ R + T S+ +AC G + G H
Sbjct: 228 WNSIIGGF-AQNSRSDVALELFKR-MKRAGFIAEQATLTSVLRACTGLA-LLELGMQAHV 284
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
H++K+ D + +L++ Y K G L + +F+Q+ E D+ TW+T++
Sbjct: 285 HIVKY---DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG-------- 333
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNN 253
L S EAL LF M+ S +PN +T+V ++ ACS+ G L G W Y R+
Sbjct: 334 ----LAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG-W---YYFRSM 385
Query: 254 LKLN-----RFVGTALVDMYSKCGCLNLACQLFDQLT-DRDTFCYNAMIG 297
KL R ++D+ K G L+ A +L +++ + D + ++G
Sbjct: 386 KKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLG 435
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 23/239 (9%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F +P V + T+IS+++ +IH ++ ++PN +T+ S+ ++C
Sbjct: 115 AHQLFDQMPQRNVISWTTMISAYSK--CKIHQKALELLVLMLRDNVRPNVYTYSSVLRSC 172
Query: 119 CGSGHWFQYGPPLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
G LH ++K LE D FV+++L++ +AK G + +FD++ D
Sbjct: 173 NGMSDVRM----LHCGIIKEGLES--DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 226
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
WN+++ +D++LE LF M+ + + TL +++ AC+ L
Sbjct: 227 VWNSIIGGFAQNSR---------SDVALE---LFKRMKRAGFIAEQATLTSVLRACTGLA 274
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L G+ H ++++ + L + ALVDMY KCG L A ++F+Q+ +RD ++ MI
Sbjct: 275 LLELGMQAHVHIVKYDQDL--ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 20/223 (8%)
Query: 77 LISSFTSHSSQIHL--AFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAH 134
L+S FT Q L A + + +H L +S T+ L K CC S G + H
Sbjct: 29 LLSEFTRLCYQRDLPRAMKAMDSLQSH-GLWADSATYSELIK-CCISNRAVHEGNLICRH 86
Query: 135 VLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXX 194
+ P F+ L+N Y K+ L + LFDQ+ + ++ +W T++
Sbjct: 87 LYFNGHRPM-MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSK------ 139
Query: 195 XXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNL 254
+ +AL L M RPN T +++ +C+ + + HC +++ L
Sbjct: 140 ------CKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGL 190
Query: 255 KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+ + FV +AL+D+++K G A +FD++ D +N++IG
Sbjct: 191 ESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIG 233
>AT4G15720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:8949569-8951419 FORWARD
LENGTH=616
Length = 616
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 20/274 (7%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHSS 86
+H L G A T+ ++HL+ KL A +F + P V + ++IS +
Sbjct: 51 LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHF 146
+ A S++ ++ + + PN +TF S+FKAC + G +HA L+ +
Sbjct: 111 PQN-ALSMFQKMHEDRPVPPNEYTFASVFKACSALAE-SRIGKNIHAR-LEISGLRRNIV 167
Query: 147 VQASLLNFYAKYGRLCVSRCLFDQI--SEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
V +SL++ Y K + +R +FD + ++ +W +++
Sbjct: 168 VSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGH----------- 216
Query: 205 LEALYLFC--DMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
EA+ LF + ++ R N+ L ++ISACS+LG L G H + R + N V T
Sbjct: 217 -EAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGGYESNTVVAT 275
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L+DMY+KCG L+ A ++F ++ Y +MI
Sbjct: 276 SLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMI 309
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 23/224 (10%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPN--PTVFLYNTLISSFT 82
K +HA++ +GL + S L+ + K A +F S+ V + ++I+++
Sbjct: 151 KNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAY- 209
Query: 83 SHSSQIHLAFSLYNRILAHKTL-QPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEP 141
+ +++ H A L+ A T + N F S+ AC G Q+G H V +
Sbjct: 210 AQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGR-LQWGKVAHGLVTR---G 265
Query: 142 PYDH--FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLE 199
Y+ V SLL+ YAK G L + +F +I + ++ +++
Sbjct: 266 GYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKH---------- 315
Query: 200 DADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
L A+ LF +M R PN VTL+ ++ ACS+ G +++G+
Sbjct: 316 --GLGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGL 357
>AT4G39952.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:18527680-18530007 FORWARD
LENGTH=775
Length = 775
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 33/287 (11%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYAL--------TIFSSIPNPTVF 72
SL +L++ +A ++T GL+ + + ++SKL S+YA +F + +F
Sbjct: 39 SLESLRKHNALIITGGLSENIF-------VASKLISSYASYGKPNLSSRVFHLVTRRDIF 91
Query: 73 LYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLH 132
L+N++I + S+ ++ +L+ ++ P+ FT P + AC WF G +H
Sbjct: 92 LWNSIIKAHFSNGDYARSLCFFFSMLLSGQS--PDHFTAPMVVSACA-ELLWFHVGTFVH 148
Query: 133 AHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXX 192
VLK + V AS + FY+K G L + +FD++ + D+ W ++
Sbjct: 149 GLVLKHGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGH------ 202
Query: 193 XXXXXLEDADLSLEALYLFCDMQMSRR---RPNEVTLVALISACSNLGALSQGVWTHCYL 249
+++ + S L C M + +PN TL ACSNLGAL +G H +
Sbjct: 203 -----VQNGE-SEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFA 256
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++N L ++FV +++ YSK G + A F +L D D F + ++I
Sbjct: 257 VKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSII 303
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 24/258 (9%)
Query: 39 LHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRI 98
L YC LL+++ KL S N +NT++ + + L+ +I
Sbjct: 373 LSMYCKFELLSVAEKL-----FCRISEEGNKEA--WNTMLKGYGKMKCHVK-CIELFRKI 424
Query: 99 LAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKY 158
+ ++ +S + S+ +C G G LH +V+K V SL++ Y K
Sbjct: 425 -QNLGIEIDSASATSVISSCSHIGAVL-LGKSLHCYVVK-TSLDLTISVVNSLIDLYGKM 481
Query: 159 GRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSR 218
G L V+ +F + ++ ++ TWN ++ + S +A+ LF M
Sbjct: 482 GDLTVAWRMFCE-ADTNVITWNAMIASYVH------------CEQSEKAIALFDRMVSEN 528
Query: 219 RRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLAC 278
+P+ +TLV L+ AC N G+L +G H Y+ ++N + AL+DMY+KCG L +
Sbjct: 529 FKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSR 588
Query: 279 QLFDQLTDRDTFCYNAMI 296
+LFD +D C+N MI
Sbjct: 589 ELFDAGNQKDAVCWNVMI 606
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 26/257 (10%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
K +H ++ T L L ++ L+ + K+ T A +F + V +N +I+S+ H
Sbjct: 453 KSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCE-ADTNVITWNAMIASYV-H 510
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
Q A +L++R+++ + +P+S T +L AC +G + G +H ++ + E +
Sbjct: 511 CEQSEKAIALFDRMVS-ENFKPSSITLVTLLMACVNTGS-LERGQMIHRYITE-TEHEMN 567
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
+ A+L++ YAK G L SR LFD ++ D WN ++ D+
Sbjct: 568 LSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMH-----------GDVE 616
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG----VWTHCYLLRNNLKLNRFV 260
A+ LF M+ S +P T +AL+SAC++ G + QG + H Y ++ NLK
Sbjct: 617 -SAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKHY--- 672
Query: 261 GTALVDMYSKCGCLNLA 277
+ LVD+ S+ G L A
Sbjct: 673 -SCLVDLLSRSGNLEEA 688
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 16/240 (6%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHS-SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
A +F +P+ V + +IS + S+ L + +PN T F+A
Sbjct: 180 ACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQA 239
Query: 118 CCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
C G + G LH +K FVQ+S+ +FY+K G + F ++ + D+
Sbjct: 240 CSNLGA-LKEGRCLHGFAVKN-GLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMF 297
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
+W +++ D+ E+ +F +MQ P+ V + LI+ +
Sbjct: 298 SWTSIIASLA-----------RSGDME-ESFDMFWEMQNKGMHPDGVVISCLINELGKMM 345
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR-DTFCYNAMI 296
+ QG H +++R+ L+ V +L+ MY K L++A +LF ++++ + +N M+
Sbjct: 346 LVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTML 405
>AT4G35130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:16721084-16723498 REVERSE
LENGTH=804
Length = 804
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 136/273 (49%), Gaps = 27/273 (9%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHS 85
KQV+ LT AL + S L+ AL +F + FL+N +I FTS
Sbjct: 60 KQVNDPALTR--ALRGFADSRLME--------DALQLFDEMNKADAFLWNVMIKGFTSCG 109
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
I A Y+R++ ++ ++FT+P + K+ G + G +HA V+K L D
Sbjct: 110 LYIE-AVQFYSRMV-FAGVKADTFTYPFVIKSVAGISS-LEEGKKIHAMVIK-LGFVSDV 165
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
+V SL++ Y K G + +F+++ E D+ +WN+++ L D
Sbjct: 166 YVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA---------LGDG---F 213
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKL-NRFVGTAL 264
+L LF +M +P+ + ++ + ACS++ + G HC+ +R+ ++ + V T++
Sbjct: 214 SSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSI 273
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+DMYSK G ++ A ++F+ + R+ +N MIG
Sbjct: 274 LDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIG 306
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 138/296 (46%), Gaps = 30/296 (10%)
Query: 8 FNHP-ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSS 65
F +P ++K + SL K++HA ++ G Y + L+++ KL + A +F
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEE 190
Query: 66 IPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF 125
+P + +N++IS + + + L+ +L +P+ F+ S AC H +
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFS-SLMLFKEMLKC-GFKPDRFSTMSALGACS---HVY 245
Query: 126 --QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
+ G +H H ++ D V S+L+ Y+KYG + + +F+ + + ++ WN ++
Sbjct: 246 SPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMI 305
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR---RPNEVTLVALISACSNLGALS 240
+ DA C +MS + +P+ +T + L+ A A+
Sbjct: 306 ------GCYARNGRVTDA--------FLCFQKMSEQNGLQPDVITSINLLPAS----AIL 347
Query: 241 QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+G H Y +R + + TAL+DMY +CG L A +FD++ +++ +N++I
Sbjct: 348 EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSII 403
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 130/273 (47%), Gaps = 21/273 (7%)
Query: 26 KQVHAQMLTTGLAL-HTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTS 83
K++H + + + ++ +L + SK +YA IF+ + + +N +I + +
Sbjct: 251 KEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCY-A 309
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
+ ++ AF + ++ LQP+ T +L A G +H + ++ P+
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASA-----ILEGRTIHGYAMRRGFLPH 364
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
++ +L++ Y + G+L + +FD+++E ++ +WN+++
Sbjct: 365 -MVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGK------------ 411
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
+ AL LF ++ S P+ T+ +++ A + +LS+G H Y++++ N + +
Sbjct: 412 NYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNS 471
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
LV MY+ CG L A + F+ + +D +N++I
Sbjct: 472 LVHMYAMCGDLEDARKCFNHILLKDVVSWNSII 504
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 115/264 (43%), Gaps = 24/264 (9%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
+ +H + G H + L+ + + A IF + V +N++I+++ +
Sbjct: 350 RTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQN 409
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY- 143
+ A L+ L +L P+S T S+ A S G +HA+++K Y
Sbjct: 410 GKN-YSALELFQE-LWDSSLVPDSTTIASILPAYAESLS-LSEGREIHAYIVK---SRYW 463
Query: 144 -DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDAD 202
+ + SL++ YA G L +R F+ I D+ +WN+++
Sbjct: 464 SNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVH------------G 511
Query: 203 LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG- 261
+++LF +M SR PN+ T +L++ACS G + +G W + ++ ++ +
Sbjct: 512 FGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEG-WEYFESMKREYGIDPGIEH 570
Query: 262 -TALVDMYSKCGCLNLACQLFDQL 284
++D+ + G + A + +++
Sbjct: 571 YGCMLDLIGRTGNFSAAKRFLEEM 594
>AT1G09190.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2966263-2967717 REVERSE
LENGTH=484
Length = 484
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 137/312 (43%), Gaps = 29/312 (9%)
Query: 8 FNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSI 66
+L+LL ++ L ++HA +L L L+H ++I L+ S YA +FS I
Sbjct: 3 IERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHI 62
Query: 67 PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQ 126
NP V ++N +I ++ + + S ++ + + + + +T+ L K+C +
Sbjct: 63 QNPNVLVFNAMIKCYSLVGPPLE-SLSFFSS-MKSRGIWADEYTYAPLLKSCSSLSD-LR 119
Query: 127 YGPPLHAHVLKFLEPPYDHF--VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL-- 182
+G +H +++ + ++ ++ Y GR+ ++ +FD++SE ++ WN +
Sbjct: 120 FGKCVHGELIR---TGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIR 176
Query: 183 -----------------LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVT 225
+ L EAL LFC+M P+E T
Sbjct: 177 GFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEAT 236
Query: 226 LVALISACSNLGALSQGVWTHCYLLRNNL-KLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+V ++ ++LG L G W H + L K VG ALVD Y K G L A +F ++
Sbjct: 237 VVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKM 296
Query: 285 TDRDTFCYNAMI 296
R+ +N +I
Sbjct: 297 QRRNVVSWNTLI 308
>AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:883782-885611 FORWARD
LENGTH=609
Length = 609
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 22/289 (7%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLASTYALT--IFSSIPNP 69
LLQ C+ + + Q HA ++ +GL + LL++ KL T +F
Sbjct: 67 LLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVK 126
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
+ +++S + + + A ++ +++ L N FT S KAC G + G
Sbjct: 127 DAISWTSMMSGYVTGKEHVK-ALEVFVEMVSF-GLDANEFTLSSAVKACSELGE-VRLGR 183
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
H V+ ++HF+ ++L Y +R +FD++ EPD+ W +L
Sbjct: 184 CFHGVVITH-GFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSA---- 238
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGVWTHCY 248
DL EAL LF M + P+ T +++AC NL L QG H
Sbjct: 239 --------FSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGK 290
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
L+ N + N V ++L+DMY KCG + A Q+F+ ++ +++ ++A++G
Sbjct: 291 LITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLG 339
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 123/273 (45%), Gaps = 31/273 (11%)
Query: 36 GLALHTYCLSHLLT----ISSKLASTYALT--------IFSSIPNPTVFLYNTLISSFTS 83
G H ++H ISS LA Y + +F +P P V + ++S+F S
Sbjct: 182 GRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAF-S 240
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
+ A L+ + K L P+ TF ++ AC G+ + G +H ++
Sbjct: 241 KNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTAC-GNLRRLKQGKEIHGKLITN-GIGS 298
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
+ V++SLL+ Y K G + +R +F+ +S+ + +W+ LL
Sbjct: 299 NVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHE---------- 348
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
+A+ +F +M+ + ++ AC+ L A+ G H +R N V +A
Sbjct: 349 --KAIEIFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESA 402
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L+D+Y K GC++ A +++ +++ R+ +NAM+
Sbjct: 403 LIDLYGKSGCIDSASRVYSKMSIRNMITWNAML 435
>AT3G26540.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9744542-9746644 REVERSE
LENGTH=700
Length = 700
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 35/300 (11%)
Query: 5 NPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGL-----ALHTYCLSHLLTISSKLASTYA 59
+ + + + + KC L + ++V Q + L A+ Y +S L + A
Sbjct: 297 DTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGL--------TREA 348
Query: 60 LTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC 119
+F +P + +N ++ + H+ + A ++ + ++ T + C
Sbjct: 349 RELFDLMPERNIVSWNAMLGGYV-HAHEWDEALDFLT-LMRQEIENIDNVTLVWILNVCS 406
Query: 120 GSGHWFQYGPPLHAHVLKFLEPPYDH--FVQASLLNFYAKYGRLCVSRCLFDQISE-PDL 176
G Q G H + + YD V +LL+ Y K G L + F Q+SE D
Sbjct: 407 GISD-VQMGKQAHGFIYRH---GYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDE 462
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
+WN LL + S +AL F MQ+ + P++ TL L++ C+N+
Sbjct: 463 VSWNALLTG------------VARVGRSEQALSFFEGMQVEAK-PSKYTLATLLAGCANI 509
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
AL+ G H +L+R+ K++ + A+VDMYSKC C + A ++F + RD +N++I
Sbjct: 510 PALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSII 569
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 24/234 (10%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSH--SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFK 116
A +F +P +N +I++ + S ++ F NR ++ +F + K
Sbjct: 115 ARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNR----DGVRATETSFAGVLK 170
Query: 117 ACCGSGHWFQYGPPLHAHVLKFLEPPYDHFV--QASLLNFYAKYGRLCVSRCLFDQISEP 174
+C G + LH V+K+ Y V + S+++ Y K + +R +FD+I P
Sbjct: 171 SC-GLILDLRLLRQLHCAVVKY---GYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNP 226
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
+WN ++ + + EA+ +F M RP T+ +++ ACS
Sbjct: 227 SDVSWNVIVRRYL------------EMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACS 274
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRD 288
AL G H ++ ++ + V T++ DMY KC L A ++FDQ +D
Sbjct: 275 RSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKD 328
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 105 QPNSF-TFPSLFKACCGSGHWFQYGPPLHAHVLKFLE-PPYDHFVQASLLNFYAKYGRLC 162
+P S+ + LF++C Q + +H++ F PP F+ + Y K G +
Sbjct: 57 EPVSYWLYERLFRSCSSKALVVQ-ARKVQSHLVTFSPLPPI--FLLNRAIEAYGKCGCVD 113
Query: 163 VSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPN 222
+R LF+++ E D +WN ++ +S E +F M R
Sbjct: 114 DARELFEEMPERDGGSWNAVITACAQN------------GVSDEVFRMFRRMNRDGVRAT 161
Query: 223 EVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFD 282
E + ++ +C + L HC +++ N + T++VD+Y KC ++ A ++FD
Sbjct: 162 ETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFD 221
Query: 283 QLTDRDTFCYNAMI 296
++ + +N ++
Sbjct: 222 EIVNPSDVSWNVIV 235
>AT3G15130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5097153-5099222 REVERSE
LENGTH=689
Length = 689
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 136/277 (49%), Gaps = 25/277 (9%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFLYNTLISSFTSHS 85
QVH +L +G L+ ++L+ + K A +F S+P V ++ L+S +
Sbjct: 27 QVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNG 86
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
+ + SL++ + + + PN FTF + KA CG + + G +H LK ++
Sbjct: 87 D-LKGSLSLFSE-MGRQGIYPNEFTFSTNLKA-CGLLNALEKGLQIHGFCLKI---GFEM 140
Query: 146 FVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
V+ SL++ Y+K GR+ + +F +I + L +WN ++ A
Sbjct: 141 MVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVH------------AGY 188
Query: 204 SLEALYLFCDMQMS--RRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKL--NRF 259
+AL F MQ + + RP+E TL +L+ ACS+ G + G H +L+R+ +
Sbjct: 189 GSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSAT 248
Query: 260 VGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ +LVD+Y KCG L A + FDQ+ ++ ++++I
Sbjct: 249 ITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLI 285
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 22/288 (7%)
Query: 16 LQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTV 71
L+ C LN L+ Q+H L G + + L+ + SK A +F I + ++
Sbjct: 114 LKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSL 173
Query: 72 FLYNTLISSFT--SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
+N +I+ F + S+ F + A+ +P+ FT SL KAC +G + G
Sbjct: 174 ISWNAMIAGFVHAGYGSKALDTFGMMQE--ANIKERPDEFTLTSLLKACSSTGMIYA-GK 230
Query: 130 PLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H +++ P + SL++ Y K G L +R FDQI E + +W++L+
Sbjct: 231 QIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYA- 289
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
++ + +EA+ LF +Q + + L ++I ++ L QG
Sbjct: 290 ----------QEGEF-VEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQAL 338
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ L V ++VDMY KCG ++ A + F ++ +D + +I
Sbjct: 339 AVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVI 386
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 14/184 (7%)
Query: 113 SLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS 172
S+ + C G Q G +H ++LK + L++ Y K ++ +FD +
Sbjct: 11 SILRVCTRKGLSDQ-GGQVHCYLLKS-GSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68
Query: 173 EPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISA 232
E ++ +W+ L+ + DL +L LF +M PNE T + A
Sbjct: 69 ERNVVSWSALMSGHVL-----------NGDLK-GSLSLFSEMGRQGIYPNEFTFSTNLKA 116
Query: 233 CSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCY 292
C L AL +G+ H + L+ ++ VG +LVDMYSKCG +N A ++F ++ DR +
Sbjct: 117 CGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISW 176
Query: 293 NAMI 296
NAMI
Sbjct: 177 NAMI 180
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 221 PNEV-TLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQ 279
PN+ LV+++ C+ G QG HCYLL++ LN L+DMY KC +A +
Sbjct: 3 PNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYK 62
Query: 280 LFDQLTDRDTFCYNAMI 296
+FD + +R+ ++A++
Sbjct: 63 VFDSMPERNVVSWSALM 79
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 113/282 (40%), Gaps = 33/282 (11%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY--------ALTIF 63
LL+ C S + KQ+H ++ +G +C S TI+ L Y A F
Sbjct: 216 LLKACSSTGMIYAGKQIHGFLVRSGF----HCPSSA-TITGSLVDLYVKCGYLFSARKAF 270
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGH 123
I T+ +++LI + + A L+ R L Q +SF S+
Sbjct: 271 DQIKEKTMISWSSLILGYAQEGEFVE-AMGLFKR-LQELNSQIDSFALSSII-GVFADFA 327
Query: 124 WFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
+ G + A +K L + V S+++ Y K G + + F ++ D+ +W ++
Sbjct: 328 LLRQGKQMQALAVK-LPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVI 386
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
L +++ +F +M P+EV +A++SACS+ G + +G
Sbjct: 387 TGYGKH------------GLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGE 434
Query: 244 WTHCYLLRNNLKLNRFVGTA-LVDMYSKCGCLNLACQLFDQL 284
LL + R A +VD+ + G L A L D +
Sbjct: 435 ELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTM 476
>AT3G16610.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5656371-5658335 REVERSE LENGTH=654
Length = 654
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 50/306 (16%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISS-----KLASTYA-------- 59
L LL+ C + ++ L G +H + L LT+SS L YA
Sbjct: 3 LSLLETC--------IRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELA 54
Query: 60 LTIFSSIPNPTV--FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
+F IP+P + ++ +I ++ S+ A LY ++L + ++P +T+P + KA
Sbjct: 55 RHVFDEIPHPRINPIAWDLMIRAYASNDFA-EKALDLYYKML-NSGVRPTKYTYPFVLKA 112
Query: 118 CCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
C G G +H+HV + D +V +L++FYAK G L ++ +FD++ + D+
Sbjct: 113 CAGL-RAIDDGKLIHSHV-NCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMV 170
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSL-----EALYLFCDMQ-MSRRRPNEVTLVALIS 231
WN ++ + SL + + LF DM+ + PN T+V +
Sbjct: 171 AWNAMI-----------------SGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFP 213
Query: 232 ACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
A GAL +G H Y R + V T ++D+Y+K C+ A ++FD ++
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVT 273
Query: 292 YNAMIG 297
++AMIG
Sbjct: 274 WSAMIG 279
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 30/282 (10%)
Query: 29 HAQMLTTGLALHTYC----LSHLLTISSKLASTYALT--------IFSSIPNPTVFLYNT 76
A L G A+H YC S+ L + + + YA + +F ++
Sbjct: 217 RAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSA 276
Query: 77 LISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVL 136
+I + + I A ++ ++L + + + L C G +H + +
Sbjct: 277 MIGGYV-ENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAV 335
Query: 137 K--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXX 194
K F+ D VQ ++++FYAKYG LC + F +I D+ ++N+L+
Sbjct: 336 KAGFI---LDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPE- 391
Query: 195 XXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNL 254
E+ LF +M+ S RP+ TL+ +++ACS+L AL G H Y + +
Sbjct: 392 -----------ESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGY 440
Query: 255 KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+N + AL+DMY+KCG L++A ++FD + RD +N M+
Sbjct: 441 AVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTML 482
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 15/188 (7%)
Query: 111 FPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQ 170
F SL + C S + G +H H+LK V +L YA + ++R +FD+
Sbjct: 2 FLSLLETCIRSRN-LVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDE 60
Query: 171 ISEPDL--ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVA 228
I P + W+ ++ D + +AL L+ M S RP + T
Sbjct: 61 IPHPRINPIAWDLMIRAYASN------------DFAEKALDLYYKMLNSGVRPTKYTYPF 108
Query: 229 LISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRD 288
++ AC+ L A+ G H ++ ++ + +V TALVD Y+KCG L +A ++FD++ RD
Sbjct: 109 VLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRD 168
Query: 289 TFCYNAMI 296
+NAMI
Sbjct: 169 MVAWNAMI 176
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 31/245 (12%)
Query: 6 PIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFS 64
P+ IL + L+ + VH + G L + +++ +K S A FS
Sbjct: 308 PVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFS 367
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC---CGS 121
I V YN+LI+ + + +F L++ + ++P+ T + AC
Sbjct: 368 EIGLKDVISYNSLITGCVVNC-RPEESFRLFHE-MRTSGIRPDITTLLGVLTACSHLAAL 425
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQAS----LLNFYAKYGRLCVSRCLFDQISEPDLA 177
GH G H + + + + V S L++ Y K G+L V++ +FD + + D+
Sbjct: 426 GH----GSSCHGYCV-----VHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIV 476
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
+WNT+L L EAL LF MQ + P+EVTL+A++SACS+ G
Sbjct: 477 SWNTMLFGFGIH------------GLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSG 524
Query: 238 ALSQG 242
+ +G
Sbjct: 525 LVDEG 529
>AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:15665102-15667075 REVERSE
LENGTH=657
Length = 657
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 136/308 (44%), Gaps = 26/308 (8%)
Query: 12 ILKLLQKCHS--LNTL-KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIP 67
+LK L C L +L +QVH ++ G + + ++T +K + A +F +
Sbjct: 135 VLKALSGCDDFWLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMS 194
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
V +N++IS + S S +Y +LA +PN T S+F+AC G +
Sbjct: 195 ERDVVSWNSMISGY-SQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQAC-GQSSDLIF 252
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G +H +++ D + +++ FYAK G L +R LFD++SE D T+ ++
Sbjct: 253 GLEVHKKMIEN-HIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYM 311
Query: 188 XXXXXXXXXXL----EDADLSL---------------EALYLFCDMQMSRRRPNEVTLVA 228
L E LS E + F +M RPN VTL +
Sbjct: 312 AHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSS 371
Query: 229 LISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRD 288
L+ + + L G H + +RN N +V T+++D Y+K G L A ++FD DR
Sbjct: 372 LLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRS 431
Query: 289 TFCYNAMI 296
+ A+I
Sbjct: 432 LIAWTAII 439
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 132/278 (47%), Gaps = 21/278 (7%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHS 85
Q+HA+++ + + S L++ ++ AL +F I F YN L+ ++TS
Sbjct: 43 QLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSRE 102
Query: 86 SQIHLAFSLY-----NRILAHKTLQPNSFTFPSLFKACCG-SGHWF-QYGPPLHAHVLKF 138
AFSL+ + + +P+S + + KA G W +H V++
Sbjct: 103 MYFD-AFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRG 161
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
D FV ++ +Y K + +R +FD++SE D+ +WN+++
Sbjct: 162 -GFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGS------F 214
Query: 199 EDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNR 258
ED +A+ D +PN VT++++ AC L G+ H ++ N+++++
Sbjct: 215 EDCKKMYKAMLACSDF-----KPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDL 269
Query: 259 FVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ A++ Y+KCG L+ A LFD+++++D+ Y A+I
Sbjct: 270 SLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAII 307
>AT1G18485.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6363172-6366084 FORWARD
LENGTH=970
Length = 970
Score = 95.5 bits (236), Expect = 4e-20, Method: Composition-based stats.
Identities = 78/278 (28%), Positives = 135/278 (48%), Gaps = 21/278 (7%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISS 80
L +LK++H L + + + +K S +YA +F I + TV +N LI
Sbjct: 411 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 470
Query: 81 FT-SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK-F 138
S+ ++ L L +I L P+SFT SL AC + G +H +++ +
Sbjct: 471 HAQSNDPRLSLDAHLQMKI---SGLLPDSFTVCSLLSACSKLKS-LRLGKEVHGFIIRNW 526
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
LE D FV S+L+ Y G LC + LFD + + L +WNT++ L
Sbjct: 527 LE--RDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY-----------L 573
Query: 199 EDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNR 258
++ AL +F M + + ++++ + ACS L +L G H Y L++ L+ +
Sbjct: 574 QNG-FPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDA 632
Query: 259 FVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
F+ +L+DMY+K G + + ++F+ L ++ T +NAMI
Sbjct: 633 FIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 670
Score = 89.4 bits (220), Expect = 2e-18, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 23/242 (9%)
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F ++ + +F +N +ISS+ S + + +++ L P+ FT+P + KAC G
Sbjct: 142 VFDALRSKNLFQWNAVISSY-SRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGM 200
Query: 122 GHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATW 179
G +H V+K +E D FV +L++FY +G + + LFD + E +L +W
Sbjct: 201 SD-VGIGLAVHGLVVKTGLVE---DVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSW 256
Query: 180 NTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR----RPNEVTLVALISACSN 235
N+++ D S E+ L +M P+ TLV ++ C+
Sbjct: 257 NSMIRV------------FSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAR 304
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
+ G H + ++ L + AL+DMYSKCGC+ A +F +++ +N M
Sbjct: 305 EREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTM 364
Query: 296 IG 297
+G
Sbjct: 365 VG 366
Score = 77.0 bits (188), Expect = 1e-14, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 16/241 (6%)
Query: 57 TYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAH-KTLQPNSFTFPSLF 115
T A IF N V +NT++ F++ H F + ++LA + ++ + T +
Sbjct: 344 TNAQMIFKMNNNKNVVSWNTMVGGFSAEGDT-HGTFDVLRQMLAGGEDVKADEVTILNAV 402
Query: 116 KACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD 175
C + LH + LK E Y+ V + + YAK G L ++ +F I
Sbjct: 403 PVCFHES-FLPSLKELHCYSLK-QEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKT 460
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
+ +WN L+ D LSL+A M++S P+ T+ +L+SACS
Sbjct: 461 VNSWNALIGGHAQS---------NDPRLSLDA---HLQMKISGLLPDSFTVCSLLSACSK 508
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
L +L G H +++RN L+ + FV +++ +Y CG L LFD + D+ +N +
Sbjct: 509 LKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTV 568
Query: 296 I 296
I
Sbjct: 569 I 569
Score = 64.7 bits (156), Expect = 8e-11, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 130/280 (46%), Gaps = 33/280 (11%)
Query: 12 ILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTI---SSKLASTYALTIFSS 65
+ LL C L +L K+VH ++ L + +L++ +L + AL F +
Sbjct: 499 VCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQAL--FDA 556
Query: 66 IPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF 125
+ + ++ +NT+I+ + + A ++ +++ + +Q + +F AC
Sbjct: 557 MEDKSLVSWNTVITGYLQNGFP-DRALGVFRQMVLYG-IQLCGISMMPVFGACSLLPS-L 613
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
+ G HA+ LK L D F+ SL++ YAK G + S +F+ + E A+WN ++
Sbjct: 614 RLGREAHAYALKHLLED-DAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMG 672
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV-- 243
L+ EA+ LF +MQ + P+++T + +++AC++ G + +G+
Sbjct: 673 YGIH------------GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRY 720
Query: 244 ---WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
+ L+ NLK ++DM + G L+ A ++
Sbjct: 721 LDQMKSSFGLKPNLKHY----ACVIDMLGRAGQLDKALRV 756
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D + ++ YA G SR +FD + +L WN ++ +L
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRN------------EL 166
Query: 204 SLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
E L F +M + P+ T +I AC+ + + G+ H +++ L + FVG
Sbjct: 167 YDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGN 226
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
ALV Y G + A QLFD + +R+ +N+MI
Sbjct: 227 ALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMI 260
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/278 (21%), Positives = 114/278 (41%), Gaps = 25/278 (8%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVFLYNTLISSFTSHSS 86
VH ++ TGL + + L++ T AL +F +P + +N++I F+ +
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268
Query: 87 QIHLAFSLYNRILAHK---TLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
+F L ++ P+ T ++ C G +H +K L
Sbjct: 269 S-EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE-IGLGKGVHGWAVK-LRLDK 325
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
+ + +L++ Y+K G + ++ +F + ++ +WNT++ D
Sbjct: 326 ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG---------DTHG 376
Query: 204 SLEALYLFCDMQM----SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRF 259
+ + L QM + +EVT++ + C + L HCY L+ N
Sbjct: 377 TFDVL-----RQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNEL 431
Query: 260 VGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
V A V Y+KCG L+ A ++F + + +NA+IG
Sbjct: 432 VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIG 469
>AT3G13880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4572180-4574426 FORWARD
LENGTH=748
Length = 748
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 24/276 (8%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSF----- 81
+H G+ + LL + +K S A+ +FS +P+ V YN +IS F
Sbjct: 274 IHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDE 333
Query: 82 -TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
T +S AF L+ + + L+P+ TF + KAC + +YG +HA + K
Sbjct: 334 ITDEASS--EAFKLFMD-MQRRGLEPSPSTFSVVLKACSAA-KTLEYGRQIHALICKN-N 388
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
D F+ ++L+ YA G F S+ D+A+W +++ +++
Sbjct: 389 FQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCH-----------VQN 437
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
L A LF + S RP E T+ ++SAC++ ALS G Y +++ + V
Sbjct: 438 EQLE-SAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSV 496
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
T+ + MY+K G + LA Q+F ++ + D Y+AMI
Sbjct: 497 KTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMI 532
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 128/285 (44%), Gaps = 18/285 (6%)
Query: 17 QKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYN 75
++C L+ + +H ++ GL+ + ++ L+ + SK A+++F +N
Sbjct: 160 ERC-DLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWN 218
Query: 76 TLISSFTSHSSQIHLAFSLYNRI--LAHKTLQPNSFTFPSLFKACCGS--GHWFQYGPPL 131
+LIS + ++ A N + + L ++ S+ KACC + + + G +
Sbjct: 219 SLISGYV----RVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAI 274
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
H + K L +D V+ +LL+ YAK G L + LF + ++ T+N ++
Sbjct: 275 HCYTAK-LGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDE 333
Query: 192 XXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLR 251
+ S EA LF DMQ P+ T ++ ACS L G H + +
Sbjct: 334 ITD-------EASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICK 386
Query: 252 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
NN + + F+G+AL+++Y+ G Q F + +D + +MI
Sbjct: 387 NNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMI 431
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 127/276 (46%), Gaps = 29/276 (10%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
+L+ C + TL +Q+HA + + S L+ + + + ST + F+S
Sbjct: 364 VLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQD 423
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ + ++I + Q+ AF L+ ++ + ++P +T SL + C G
Sbjct: 424 IASWTSMIDCHV-QNEQLESAFDLFRQLFSSH-IRPEEYTV-SLMMSACADFAALSSGEQ 480
Query: 131 LHAHVLKFLEPPYDHF--VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+ + +K D F V+ S ++ YAK G + ++ +F ++ PD+AT++ ++
Sbjct: 481 IQGYAIK---SGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISS--- 534
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV-WTHC 247
L + EAL +F M+ +PN+ + ++ AC + G ++QG+ + C
Sbjct: 535 ---------LAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQGLKYFQC 585
Query: 248 YLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLF 281
++N+ ++N T LVD+ + G L+ A L
Sbjct: 586 --MKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLI 619
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 23/238 (9%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A T F++I ++ TLI+ ++ L + + + K +S + LF+
Sbjct: 7 AKTFFNNIAQDSLV---TLITK------RVGLGYRFLSSLCQPKNTALDSEGYKILFQTA 57
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
SG G H H++K ++ +LLN Y K L +R LFD++ E ++ +
Sbjct: 58 AKSGSVV-LGKLAHGHMIKS-SLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIIS 115
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
+N+L+ +A+ LF + + + + ++ T + C
Sbjct: 116 FNSLISGYTQMGFYE------------QAMELFLEAREANLKLDKFTYAGALGFCGERCD 163
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L G H ++ N L F+ L+DMYSKCG L+ A LFD+ +RD +N++I
Sbjct: 164 LDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLI 221
>AT4G21300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11336479-11339052 FORWARD
LENGTH=857
Length = 857
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 133/292 (45%), Gaps = 30/292 (10%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLAST-------YALTIFS 64
LLQ C + N L KQVHA ++ ++ +Y +L + + S Y L +
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
S P +N++ISSF + ++ A + Y ++L + P+ TFP L KAC ++
Sbjct: 101 SSIRP----WNSIISSFV-RNGLLNQALAFYFKMLCF-GVSPDVSTFPCLVKACVALKNF 154
Query: 125 FQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLX 184
G + + L + FV +SL+ Y +YG++ V LFD++ + D WN +L
Sbjct: 155 --KGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLN 212
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
+ F M+M + PN VT ++S C++ + GV
Sbjct: 213 GYAKCGALD------------SVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQ 260
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++ + + + +L+ MYSKCG + A +LF ++ DT +N MI
Sbjct: 261 LHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMI 312
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 142/289 (49%), Gaps = 21/289 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSK-LASTYALTIFSSIPNPT 70
+L + K +L KQ+H ++ ++L + S L+ K + A IFS +
Sbjct: 346 LLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVD 405
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V ++ +IS + + I + ++ R L + PN T S+ G + G
Sbjct: 406 VVVFTAMISGYLHNGLYID-SLEMF-RWLVKVKISPNEITLVSILPVI-GILLALKLGRE 462
Query: 131 LHAHVLKFLEPPYDHF--VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
LH ++K +D+ + ++++ YAK GR+ ++ +F+++S+ D+ +WN+++
Sbjct: 463 LHGFIIK---KGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCA- 518
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
+D A+ +F M +S + V++ A +SAC+NL + S G H +
Sbjct: 519 -----------QSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGF 567
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+++++L + + + L+DMY+KCG L A +F + +++ +N++I
Sbjct: 568 MIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIA 616
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 132/271 (48%), Gaps = 17/271 (6%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHS 85
Q+H ++ +G+ + LL++ SK A +F + +N +IS + S
Sbjct: 260 QLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYV-QS 318
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
+ + + + +++ L P++ TF SL + + +Y +H ++++ D
Sbjct: 319 GLMEESLTFFYEMISSGVL-PDAITFSSLLPSVSKFEN-LEYCKQIHCYIMRH-SISLDI 375
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
F+ ++L++ Y K + +++ +F Q + D+ + ++ L +
Sbjct: 376 FLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHN------------GLYI 423
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALV 265
++L +F + + PNE+TLV+++ L AL G H ++++ +G A++
Sbjct: 424 DSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVI 483
Query: 266 DMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
DMY+KCG +NLA ++F++L+ RD +N+MI
Sbjct: 484 DMYAKCGRMNLAYEIFERLSKRDIVSWNSMI 514
>AT2G44880.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:18505239-18506906 FORWARD
LENGTH=555
Length = 555
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 126/272 (46%), Gaps = 25/272 (9%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSHS 85
Q+H+Q+ G Y + ++ + +K A F +P+ + + LIS +
Sbjct: 99 QLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYI-RC 157
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
++ LA L++++ K + + K+ + + H V+ +
Sbjct: 158 GELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITW------- 210
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
++++ Y + +R LFD + E +L +WNT++
Sbjct: 211 ---TTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQ------------ 255
Query: 206 EALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
E + LF +MQ + P++VT+++++ A S+ GALS G W HC++ R L V TA+
Sbjct: 256 EGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAI 315
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+DMYSKCG + A ++FD++ ++ +NAMI
Sbjct: 316 LDMYSKCGEIEKAKRIFDEMPEKQVASWNAMI 347
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 36/262 (13%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHS 85
+ H ++T +H YC + + KL F ++P + +NT+I + +
Sbjct: 201 EMTHKTVITWTTMIHGYCNIKDIDAARKL--------FDAMPERNLVSWNTMIGGYC-QN 251
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
Q L+ + A +L P+ T S+ A +G G H V + D
Sbjct: 252 KQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGA-LSLGEWCHCFVQR---KKLDK 307
Query: 146 FVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
V+ ++L+ Y+K G + ++ +FD++ E +A+WN ++
Sbjct: 308 KVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGN------------ 355
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG-VWTHCYLLRN---NLKLNRF 259
+ AL LF M M +P+E+T++A+I+AC++ G + +G W H ++R N K+ +
Sbjct: 356 ARAALDLFVTM-MIEEKPDEITMLAVITACNHGGLVEEGRKWFH--VMREMGLNAKIEHY 412
Query: 260 VGTALVDMYSKCGCLNLACQLF 281
+VD+ + G L A L
Sbjct: 413 --GCMVDLLGRAGSLKEAEDLI 432
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 32 MLTTGLALHTYCLSHLLTIS-SKLASTYALTIFSSIPN-PTVFLYNTLISSFTSHSSQIH 89
ML + + + L IS S + YA +F P FL N++I ++ + Q
Sbjct: 1 MLRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYL-ETRQYP 59
Query: 90 LAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQA 149
+F+LY + P++FTF +L K+C S +Q G LH+ + +F D +V
Sbjct: 60 DSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQ-GLQLHSQIWRF-GFCADMYVST 117
Query: 150 SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA-------- 201
+++ YAK+G++ +R FD++ +W L+ L D
Sbjct: 118 GVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVV 177
Query: 202 --DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRF 259
+ ++ DM +RR +E+T +I+ W
Sbjct: 178 IYNAMMDGFVKSGDMTSARRLFDEMTHKTVIT------------W--------------- 210
Query: 260 VGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
T ++ Y ++ A +LFD + +R+ +N MIG
Sbjct: 211 --TTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIG 246
>AT4G37170.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:17498580-17500655 REVERSE
LENGTH=691
Length = 691
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 130/317 (41%), Gaps = 45/317 (14%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
++++ + +L K+VH + T+G + LL + +K S A +F +PN
Sbjct: 91 LIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRD 150
Query: 71 VFLYNTLISSFTS------------------------------HSSQIHLAFSLYNRILA 100
+ +N +++ + Q A LY+ +
Sbjct: 151 LCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQR 210
Query: 101 HKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGR 160
+PN FT S+ A + + G +H H+++ D + +SL++ Y K G
Sbjct: 211 VPNSRPNIFTV-SIAVAAAAAVKCIRRGKEIHGHIVR-AGLDSDEVLWSSLMDMYGKCGC 268
Query: 161 LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRR 220
+ +R +FD+I E D+ +W +++ E LF ++ S R
Sbjct: 269 IDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWR------------EGFSLFSELVGSCER 316
Query: 221 PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
PNE T +++AC++L G H Y+ R F ++LVDMY+KCG + A +
Sbjct: 317 PNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHV 376
Query: 281 FDQLTDRDTFCYNAMIG 297
D D + ++IG
Sbjct: 377 VDGCPKPDLVSWTSLIG 393
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 17/219 (7%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
K++H ++ GL S L+ + K A IF I V + ++I +
Sbjct: 238 KEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK- 296
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
SS+ FSL++ ++ +PN +TF + AC + G +H ++ + PY
Sbjct: 297 SSRWREGFSLFSELVG-SCERPNEYTFAGVLNACADLTT-EELGKQVHGYMTRVGFDPYS 354
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
F +SL++ Y K G + ++ + D +PDL +W +L+
Sbjct: 355 -FASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPD----------- 402
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
EAL F + S +P+ VT V ++SAC++ G + +G+
Sbjct: 403 -EALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGL 440
>AT5G40410.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:16171385-16173211 FORWARD
LENGTH=608
Length = 608
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 142/292 (48%), Gaps = 27/292 (9%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
++ ++ C S+ + +H +++ + H + L+ +L A +F +P
Sbjct: 37 LIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERD 96
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKT-LQPNSFTFPSLFKACCGSGHWFQYGP 129
+ +N+LIS ++ + F + +R++ + +PN TF S+ AC G + G
Sbjct: 97 LVSWNSLISGYSGRG-YLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGS-KEEGR 154
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+H V+KF V A +N+Y K G L S LF+ +S +L +WNT++
Sbjct: 155 CIHGLVMKFGVLEEVKVVNA-FINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIH--- 210
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRR---RPNEVTLVALISACSNLGA--LSQGVW 244
L++ L+ + L F MSRR P++ T +A++ +C ++G L+QG+
Sbjct: 211 --------LQNG-LAEKGLAYF---NMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGI- 257
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++ N+ + TAL+D+YSK G L + +F ++T D+ + AM+
Sbjct: 258 -HGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAML 308
>AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:23402080-23405180 FORWARD
LENGTH=884
Length = 884
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 138/289 (47%), Gaps = 20/289 (6%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALH-TYCLSHLLTISSKLAS-TYALTIFSSIPNP 69
+L+L K +++ +Q+H+++ T + + L+ + K S A +F +P+
Sbjct: 86 VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDR 145
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
T F +NT+I ++ S+ A +LY + S +FP+L KAC + G
Sbjct: 146 TAFAWNTMIGAYVSNGEPAS-ALALYWNMRVEGVPLGLS-SFPALLKACAKLRD-IRSGS 202
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP-DLATWNTLLXXXXX 188
LH+ ++K L F+ +L++ YAK L +R LFD E D WN++L
Sbjct: 203 ELHSLLVK-LGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYST 261
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
+ SLE L LF +M M+ PN T+V+ ++AC G H
Sbjct: 262 ------------SGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHAS 309
Query: 249 LLRNNLKLNR-FVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L+++ + +V AL+ MY++CG + A ++ Q+ + D +N++I
Sbjct: 310 VLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 138/292 (47%), Gaps = 25/292 (8%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNP- 69
+LK K + + ++H+ ++ G + ++ L+++ +K + A +F
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTL-QPNSFTFPSLFKACCGSGHWFQYG 128
L+N+++SS+++ + L+ + H T PNS+T S AC G + + G
Sbjct: 248 DAVLWNSILSSYSTSGKSLE-TLELFREM--HMTGPAPNSYTIVSALTACDGFS-YAKLG 303
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+HA VLK + +V +L+ Y + G++ + + Q++ D+ TWN+L+
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 363
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
+ EAL F DM + + +EV++ ++I+A L L G+ H Y
Sbjct: 364 NL------------MYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAY 411
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLAC---QLFDQLTDRDTFCYNAMIG 297
++++ N VG L+DMYSKC NL C + F ++ D+D + +I
Sbjct: 412 VIKHGWDSNLQVGNTLIDMYSKC---NLTCYMGRAFLRMHDKDLISWTTVIA 460
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 121/276 (43%), Gaps = 29/276 (10%)
Query: 33 LTTGLALHTYCLSH-----------LLTISSKLAST-YALTIFSSIPNPTVFLYNTLISS 80
L G+ LH Y + H L+ + SK T Y F + + + + T+I+
Sbjct: 402 LLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAG 461
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
+ + + A L+ R +A K ++ + S+ +A +H H+L+ +
Sbjct: 462 YAQNDCHVE-ALELF-RDVAKKRMEIDEMILGSILRASSVLKSMLIV-KEIHCHILR--K 516
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
D +Q L++ Y K + + +F+ I D+ +W +++
Sbjct: 517 GLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNES------- 569
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
EA+ LF M + + V L+ ++SA ++L AL++G HCYLLR L +
Sbjct: 570 -----EAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSI 624
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
A+VDMY+ CG L A +FD++ + Y +MI
Sbjct: 625 AVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMI 660
>AT3G01580.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:223529-225511 REVERSE
LENGTH=660
Length = 660
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 113/243 (46%), Gaps = 16/243 (6%)
Query: 55 ASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSL 114
+S A +F + +++ +NTL+ S + + + + + +P++FT P
Sbjct: 9 SSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSH--MFRDEEKPDNFTLPVA 66
Query: 115 FKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
KAC G YG +H V K + D +V +SL+ Y K GR+ + +FD++ +P
Sbjct: 67 LKAC-GELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQM-SRRRPNEVTLVALISAC 233
D+ TW++++ E +A+ F M M S P+ VTL+ L+SAC
Sbjct: 126 DIVTWSSMV------------SGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSAC 173
Query: 234 SNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYN 293
+ L G H +++R + + +L++ Y+K A LF + ++D ++
Sbjct: 174 TKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWS 233
Query: 294 AMI 296
+I
Sbjct: 234 TVI 236
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 18/271 (6%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSK-LASTYALTIFSSIPNPTVFLYNTLISSFTSHSS 86
VH ++ G + ++ LL +K A A+ +F I V ++T+I+ + + +
Sbjct: 185 VHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGA 244
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA-HVLKFLEPPYDH 145
A ++N ++ T +PN T + +AC + H + G H + K LE
Sbjct: 245 AAE-ALLVFNDMMDDGT-EPNVATVLCVLQACAAA-HDLEQGRKTHELAIRKGLETEVK- 300
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
V +L++ Y K + +F +I D+ +W L+ A S+
Sbjct: 301 -VSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGM---------AHRSI 350
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALV 265
E + + + RP+ + +V ++ +CS LG L Q H Y+++ N F+G +LV
Sbjct: 351 EEFSIM--LLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLV 408
Query: 266 DMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++YS+CG L A ++F+ + +DT + ++I
Sbjct: 409 ELYSRCGSLGNASKVFNGIALKDTVVWTSLI 439
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 128/282 (45%), Gaps = 27/282 (9%)
Query: 12 ILKLLQKC---HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSK-LASTYALTIFSSIP 67
+L +LQ C H L ++ H + GL + L+ + K + A +FS IP
Sbjct: 267 VLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIP 326
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
V + LIS FT + H + ++ +L +P++ + +C G + +
Sbjct: 327 RKDVVSWVALISGFTLNG-MAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELG-FLEQ 384
Query: 128 GPPLHAHVLKFLEPPYDH--FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
H++V+K+ +D F+ ASL+ Y++ G L + +F+ I+ D W +L+
Sbjct: 385 AKCFHSYVIKY---GFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITG 441
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVW 244
+AL F M + S +PNEVT ++++SACS+ G + +G+
Sbjct: 442 YGIHGK------------GTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLR 489
Query: 245 THCYLLRNNLKL--NRFVGTALVDMYSKCGCLNLACQLFDQL 284
L+ N+ +L N LVD+ + G L+ A ++ ++
Sbjct: 490 IF-KLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRM 530
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 152 LNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLF 211
+ F K+ +R +F ++++ L WNTLL L E LY F
Sbjct: 1 MGFCRKFSSSVDARQMFGEMTKRSLYQWNTLL------------KSLSREKQWEEVLYHF 48
Query: 212 CDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN-NLKLNRFVGTALVDMYSK 270
M +P+ TL + AC L ++ G H ++ ++ L + +VG++L+ MY K
Sbjct: 49 SHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIK 108
Query: 271 CGCLNLACQLFDQLTDRDTFCYNAMI 296
CG + A ++FD+L D +++M+
Sbjct: 109 CGRMIEALRMFDELEKPDIVTWSSMV 134
>AT4G33170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:15995701-15998673 REVERSE
LENGTH=990
Length = 990
Score = 92.4 bits (228), Expect = 4e-19, Method: Composition-based stats.
Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 18/276 (6%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSF 81
L+ KQVH + ++ + L+ S+ I N + +N +++ +
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFDLVAWNAMMAGY 492
Query: 82 TSHSSQIHLAFSLYNRILAHKTLQ-PNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
T S H L+ L HK + + FT ++FK C G G +HA+ +K
Sbjct: 493 T-QSHDGHKTLKLF--ALMHKQGERSDDFTLATVFKTC-GFLFAINQGKQVHAYAIKS-G 547
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
D +V + +L+ Y K G + ++ FD I PD W T++ +E+
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGC-----------IEN 596
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
+ A ++F M++ P+E T+ L A S L AL QG H L+ N + FV
Sbjct: 597 GEEE-RAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFV 655
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
GT+LVDMY+KCG ++ A LF ++ + +NAM+
Sbjct: 656 GTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAML 691
Score = 87.0 bits (214), Expect = 1e-17, Method: Composition-based stats.
Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 17/280 (6%)
Query: 18 KCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNT 76
K SL +QVH L GL L + L+ + KL +A T+F ++ + +N+
Sbjct: 327 KVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNS 386
Query: 77 LISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVL 136
+I+ + ++ A L+ ++L L+P+ +T S+ KA +H H +
Sbjct: 387 VIAGIAQNGLEVE-AVCLFMQLL-RCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAI 444
Query: 137 KFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXX 196
K + D FV +L++ Y++ + + LF++ DL WN ++
Sbjct: 445 K-INNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQS------- 495
Query: 197 XLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKL 256
D +L+ LF M R ++ TL + C L A++QG H Y +++ L
Sbjct: 496 --HDGHKTLK---LFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDL 550
Query: 257 NRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ +V + ++DMY KCG ++ A FD + D + MI
Sbjct: 551 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMI 590
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G HA +L F E P + F+ +L++ Y+K G L +R +FD++ + DL +WN++L
Sbjct: 58 GKCTHARILTFEENP-ERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
+E+ +A LF ++ + +TL ++ C + G + H
Sbjct: 117 QSSECV----VENIQ---QAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHG 169
Query: 248 YLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
Y + L + FV ALV++Y K G + LF+++ RD +N M+
Sbjct: 170 YACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLML 218
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 208 LYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDM 267
L F DM S ++VT + +++ + +L+ G HC L+ L L V +L++M
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359
Query: 268 YSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
Y K A +FD +++RD +N++I
Sbjct: 360 YCKLRKFGFARTVFDNMSERDLISWNSVIA 389
>AT5G39350.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:15750929-15752962 FORWARD
LENGTH=677
Length = 677
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 20 HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS--TYALTIFSSIPNPTVFLYNTL 77
S++ K +H ++T G + + LS L+++ L TYA +F +P ++ YN +
Sbjct: 29 QSISKTKALHCHVITGG-RVSGHILS-TLSVTYALCGHITYARKLFEEMPQSSLLSYNIV 86
Query: 78 ISSFTSHSSQIHLAFSLYNRILAHKTL-QPNSFTFPSLFKACCGSGHWFQYGPPLHAHVL 136
I + H A S++ R+++ P+ +T+P + KA G + G +H +L
Sbjct: 87 IRMYV-REGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAA-GELKSMKLGLVVHGRIL 144
Query: 137 KFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXX 196
+ D +VQ +LL Y +G++ ++R +FD + D+ +WNT++
Sbjct: 145 RSW-FGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMN--- 200
Query: 197 XLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKL 256
+AL +F M + T+V+++ C +L L G H + L
Sbjct: 201 ---------DALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGD 251
Query: 257 NRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
V ALV+MY KCG ++ A +FD++ RD + MI
Sbjct: 252 KIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMI 291
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F + V + +I+ +T + A L R++ + ++PN+ T SL + CG
Sbjct: 275 VFDRMERRDVITWTCMINGYT-EDGDVENALELC-RLMQFEGVRPNAVTIASLV-SVCGD 331
Query: 122 GHWFQYGPPLHAHVLKFLEPPY-DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
G LH ++ + Y D ++ SL++ YAK R+ + +F S+ W+
Sbjct: 332 ALKVNDGKCLHGWAVR--QQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWS 389
Query: 181 TLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS 240
++ +L +AL LF M+ PN TL +L+ A + L L
Sbjct: 390 AIIAGCVQN------------ELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLR 437
Query: 241 QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTD----RDTFCYNAMI 296
Q + HCYL + + T LV +YSKCG L A ++F+ + + +D + A+I
Sbjct: 438 QAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALI 497
>AT5G13230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4222514-4224982 FORWARD
LENGTH=822
Length = 822
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 17/272 (6%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
K VH Q+L T L LL + ++L + A +F+ +P V ++ +I+ F +
Sbjct: 267 KGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN 326
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ A L+ R + + PN FT S+ C G G LH V+K + D
Sbjct: 327 GF-CNEAVDLFIR-MREAFVVPNEFTLSSILNGC-AIGKCSGLGEQLHGLVVK-VGFDLD 382
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
+V +L++ YAK ++ + LF ++S + +WNT++ E+
Sbjct: 383 IYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGY------------ENLGEG 430
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
+A +F + ++ EVT + + AC++L ++ GV H ++ N V +L
Sbjct: 431 GKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSL 490
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+DMY+KCG + A +F+++ D +NA+I
Sbjct: 491 IDMYAKCGDIKFAQSVFNEMETIDVASWNALI 522
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 19/228 (8%)
Query: 16 LQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLY 74
+ KC L +Q+H ++ G L Y + L+ + +K A+ +F+ + + +
Sbjct: 360 IGKCSGLG--EQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSW 417
Query: 75 NTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAH 134
NT+I + + + AFS++ L ++ + TF S AC G +H
Sbjct: 418 NTVIVGY-ENLGEGGKAFSMFREALRNQ-VSVTEVTFSSALGACASLAS-MDLGVQVHGL 474
Query: 135 VLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXX 194
+K V SL++ YAK G + ++ +F+++ D+A+WN L+
Sbjct: 475 AIK-TNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTH----- 528
Query: 195 XXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
L +AL + M+ +PN +T + ++S CSN G + QG
Sbjct: 529 -------GLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQG 569
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 124/300 (41%), Gaps = 40/300 (13%)
Query: 9 NHPILKLLQKCHSLN---TLKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFS 64
+H +L++C N + K +H +L G L + + LL K AL +F
Sbjct: 49 SHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFD 108
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRI-LAHKTLQPNSFT-----FPSLFKAC 118
+P + TL + LY+R+ L P+ FT F SL KA
Sbjct: 109 EMPERNNVSFVTLAQGYACQDP-----IGLYSRLHREGHELNPHVFTSFLKLFVSLDKA- 162
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDH--FVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
+ P LH+ ++K YD FV A+L+N Y+ G + +R +F+ I D+
Sbjct: 163 -------EICPWLHSPIVKL---GYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDI 212
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
W ++ ED+ L L M+M+ PN T + A L
Sbjct: 213 VVWAGIVSCYVENGY------FEDS------LKLLSCMRMAGFMPNNYTFDTALKASIGL 260
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
GA H +L+ L+ VG L+ +Y++ G ++ A ++F+++ D ++ MI
Sbjct: 261 GAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMI 320
>AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:8513947-8516275 FORWARD
LENGTH=684
Length = 684
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 130/283 (45%), Gaps = 33/283 (11%)
Query: 24 TLKQVHAQMLTTGLALHTY--CLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSF 81
T KQ+HA + G L + C + + ++L A +F IP + +N IS+
Sbjct: 126 TGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDD-ARKLFDEIPERNLETWNAFISNS 184
Query: 82 TSHSS--QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFL 139
+ + AF + RI H PNS TF + AC H G LH VL+
Sbjct: 185 VTDGRPREAIEAFIEFRRIDGH----PNSITFCAFLNACSDWLH-LNLGMQLHGLVLR-- 237
Query: 140 EPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXX 197
+D V L++FY K ++ S +F ++ + +W +L+
Sbjct: 238 -SGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNH------- 289
Query: 198 LEDADLSLEALYLFCDMQMSRRRPNEVT---LVALISACSNLGALSQGVWTHCYLLRNNL 254
ED S+ LYL SR+ E + + +++SAC+ + L G H + ++ +
Sbjct: 290 -EDEKASV--LYL-----RSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACV 341
Query: 255 KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+ FVG+ALVDMY KCGC+ + Q FD++ +++ N++IG
Sbjct: 342 ERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIG 384
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 20/288 (6%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTT-GLALHTYCLSHLLTISSKLA-STYALTIFSSIPNP 69
+LK S+ + VHA+++ T + ++L+ + SKL A + P
Sbjct: 12 LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRI-LAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
V + +LIS + H + +L + + + PN FTFP FKA S G
Sbjct: 72 NVVSWTSLISGLAQNG---HFSTALVEFFEMRREGVVPNDFTFPCAFKAVA-SLRLPVTG 127
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+HA +K D FV S + Y K +R LFD+I E +L TWN +
Sbjct: 128 KQIHALAVK-CGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVT 186
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
EA+ F + + PN +T A ++ACS+ L+ G+ H
Sbjct: 187 DGRPR------------EAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGL 234
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+LR+ + V L+D Y KC + + +F ++ ++ + +++
Sbjct: 235 VLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLV 282
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 23/227 (10%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTI-FSSIPNPTVFLYNTLISS 80
LN Q+H +L +G + L+ K + I F+ + + +L+++
Sbjct: 225 LNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAA 284
Query: 81 FT-SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF- 138
+ +H + L +R ++ + F S+ AC G + G +HAH +K
Sbjct: 285 YVQNHEDEKASVLYLRSR---KDIVETSDFMISSVLSACAGMAG-LELGRSIHAHAVKAC 340
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
+E FV ++L++ Y K G + S FD++ E +L T N+L+
Sbjct: 341 VERTI--FVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQG-------- 390
Query: 199 EDADLSLEALYLFCDM--QMSRRRPNEVTLVALISACSNLGALSQGV 243
D+ AL LF +M + PN +T V+L+SACS GA+ G+
Sbjct: 391 -QVDM---ALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGM 433
>AT2G02750.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:771641-773482 REVERSE
LENGTH=613
Length = 613
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 24/201 (11%)
Query: 98 ILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFY 155
IL+H PN FTFP L K+C G Q G LHA V+K F D F +L++ Y
Sbjct: 24 ILSH---SPNKFTFPPLLKSCAKLGDVVQ-GRILHAQVVKTGFF---VDVFTATALVSMY 76
Query: 156 AKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQ 215
K ++ + + D++ E +A+ N + L + +A +F D +
Sbjct: 77 MKVKQVTDALKVLDEMPERGIASVNAAV------------SGLLENGFCRDAFRMFGDAR 124
Query: 216 MSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLN 275
+S N VT+ +++ C G + G+ HC +++ ++ +VGT+LV MYS+CG
Sbjct: 125 VSGSGMNSVTVASVLGGC---GDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWV 181
Query: 276 LACQLFDQLTDRDTFCYNAMI 296
LA ++F+++ + YNA I
Sbjct: 182 LAARMFEKVPHKSVVTYNAFI 202
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 139/324 (42%), Gaps = 54/324 (16%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+ +L C + Q+H + +G + Y + L+++ S+ A +F +P+ +
Sbjct: 135 VASVLGGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKS 194
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V YN IS + ++L S++N + + +PN TF + AC S QYG
Sbjct: 195 VVTYNAFISGLMENGV-MNLVPSVFNLMRKFSSEEPNDVTFVNAITACA-SLLNLQYGRQ 252
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAK--------------------------------Y 158
LH V+K E ++ V +L++ Y+K
Sbjct: 253 LHGLVMK-KEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMIN 311
Query: 159 GRLCVSRCLFDQIS----EPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM 214
G+ + LF+++ +PD ATWN+L+ +EA F M
Sbjct: 312 GQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKV------------IEAFKFFERM 359
Query: 215 QMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCL 274
P+ L +L+SACS++ L G H ++++ + + FV T+L+DMY KCG
Sbjct: 360 LSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLS 419
Query: 275 NLACQLFDQLT--DRDTFCYNAMI 296
+ A ++FD+ +D +N MI
Sbjct: 420 SWARRIFDRFEPKPKDPVFWNVMI 443
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 23/287 (8%)
Query: 15 LLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
LL+ C L + Q +HAQ++ TG + + + L+++ K+ T AL + +P
Sbjct: 37 LLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERG 96
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ N +S + AF ++ + NS T S+ C + G
Sbjct: 97 IASVNAAVSGLLENGF-CRDAFRMFGDARVSGS-GMNSVTVASVLGGCGD----IEGGMQ 150
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH +K + +V SL++ Y++ G ++ +F+++ + T+N +
Sbjct: 151 LHCLAMKS-GFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGL---- 205
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
+E+ ++L + S PN+VT V I+AC++L L G H ++
Sbjct: 206 -------MENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVM 258
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTD-RDTFCYNAMI 296
+ + VGTAL+DMYSKC C A +F +L D R+ +N++I
Sbjct: 259 KKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVI 305
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW-FQ 126
P +N+LIS F+ I AF + R+L+ + P+ SL AC S W +
Sbjct: 330 KPDSATWNSLISGFSQLGKVIE-AFKFFERMLS-VVMVPSLKCLTSLLSAC--SDIWTLK 385
Query: 127 YGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP---DLATWNTLL 183
G +H HV+K D FV SL++ Y K G +R +FD+ EP D WN ++
Sbjct: 386 NGKEIHGHVIK-AAAERDIFVLTSLIDMYMKCGLSSWARRIFDRF-EPKPKDPVFWNVMI 443
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
A+ +F ++ + P+ T A++SACS+ G + +G
Sbjct: 444 SGYGKHGECES------------AIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKG- 490
Query: 244 WTHCYLLRNN----LKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+ + L +G ++D+ + G L A ++ DQ+
Sbjct: 491 -SQIFRLMQEEYGYKPSTEHIG-CMIDLLGRSGRLREAKEVIDQM 533
>AT3G47840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:17651912-17654032 FORWARD
LENGTH=706
Length = 706
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 129/289 (44%), Gaps = 21/289 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+LK + ++ + +HA + T L Y S LL + ++ + +FS +P
Sbjct: 114 VLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRN 173
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ +I+ H+ + + ++ + + L +++TF KAC G +YG
Sbjct: 174 AVTWTAIITGLV-HAGRYKEGLTYFSEMSRSEEL-SDTYTFAIALKACAGL-RQVKYGKA 230
Query: 131 LHAHVL--KFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H HV+ F+ V SL Y + G + CLF+ +SE D+ +W +L+
Sbjct: 231 IHTHVIVRGFVTTL---CVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKR 287
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
++A+ F M+ S+ PNE T ++ SAC++L L G HC
Sbjct: 288 IGQ------------EVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCN 335
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+L L + V +++ MYS CG L A LF + RD ++ +IG
Sbjct: 336 VLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIG 384
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 29/265 (10%)
Query: 36 GLALHTYCLSH----LLTISSKLASTY--------ALTIFSSIPNPTVFLYNTLISSFTS 83
G A+HT+ + L +++ LA+ Y L +F ++ V + +LI ++
Sbjct: 228 GKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKR 287
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
++ + + + + PN TF S+F AC S +G LH +VL L
Sbjct: 288 IGQEVKAVETFIK--MRNSQVPPNEQTFASMFSAC-ASLSRLVWGEQLHCNVLS-LGLND 343
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
V S++ Y+ G L + LF + D+ +W+T++ A
Sbjct: 344 SLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYC------------QAGF 391
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
E F M+ S +P + L +L+S N+ + G H L L+ N V ++
Sbjct: 392 GEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSS 451
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRD 288
L++MYSKCG + A +F + TDRD
Sbjct: 452 LINMYSKCGSIKEASMIFGE-TDRD 475
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 111/255 (43%), Gaps = 20/255 (7%)
Query: 45 SHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSF-TSHSSQIHLAFSLYNRILAHKT 103
SHL ++ + A +F +P+ + + ++I + T+++S L R++ H
Sbjct: 45 SHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDH-A 103
Query: 104 LQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRL 161
+ P++ + KAC G YG LHA+ +K L Y V +SLL+ Y + G++
Sbjct: 104 VSPDTSVLSVVLKAC-GQSSNIAYGESLHAYAVKTSLLSSVY---VGSSLLDMYKRVGKI 159
Query: 162 CVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRP 221
S +F ++ + TW ++ L A E L F +M S
Sbjct: 160 DKSCRVFSEMPFRNAVTWTAII------------TGLVHAGRYKEGLTYFSEMSRSEELS 207
Query: 222 NEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLF 281
+ T + AC+ L + G H +++ V +L MY++CG + LF
Sbjct: 208 DTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLF 267
Query: 282 DQLTDRDTFCYNAMI 296
+ +++RD + ++I
Sbjct: 268 ENMSERDVVSWTSLI 282
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
P+ ++++ F S L G L +R +FD++ D+ +W +++
Sbjct: 24 KPVEENIVRISNQVMVKFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVT 83
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRR--RPNEVTLVALISACSNLGALSQGVWTH 246
A+ S EAL LF M++ P+ L ++ AC ++ G H
Sbjct: 84 ------------ANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLH 131
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
Y ++ +L + +VG++L+DMY + G ++ +C++F ++ R+ + A+I
Sbjct: 132 AYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAII 181
>AT1G74600.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:28025153-28027840 REVERSE LENGTH=895
Length = 895
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 128/272 (47%), Gaps = 21/272 (7%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPN-PTVFLYNTLISSFTSH 84
QVHA + +G L + + L+++ SK + +F + + + N +I+SF S
Sbjct: 372 QVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSF-SQ 430
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
S + A L+ R+L + L+ + F+ SL G +H + LK D
Sbjct: 431 SKKPGKAIRLFTRML-QEGLRTDEFSVCSLLSVL----DCLNLGKQVHGYTLK-SGLVLD 484
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
V +SL Y+K G L S LF I D A W +++ +
Sbjct: 485 LTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISG------------FNEYGYL 532
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
EA+ LF +M P+E TL A+++ CS+ +L +G H Y LR + +G+AL
Sbjct: 533 REAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSAL 592
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
V+MYSKCG L LA Q++D+L + D +++I
Sbjct: 593 VNMYSKCGSLKLARQVYDRLPELDPVSCSSLI 624
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 18/255 (7%)
Query: 33 LTTGLALHTYCLSHLLTISSK-LASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLA 91
+ G + S L+ + SK L A +F + V+ +NT+I+ +
Sbjct: 177 IKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAG-ALRNQNYGAV 235
Query: 92 FSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASL 151
F L++ + +P+S+T+ S+ A C S ++G + A V+K D FV ++
Sbjct: 236 FDLFHEMCVGFQ-KPDSYTYSSVL-AACASLEKLRFGKVVQARVIKC--GAEDVFVCTAI 291
Query: 152 LNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLF 211
++ YAK G + + +F +I P + +W +L ++ + AL +F
Sbjct: 292 VDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYT------------KSNDAFSALEIF 339
Query: 212 CDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKC 271
+M+ S N T+ ++ISAC + + H ++ ++ L+ V AL+ MYSK
Sbjct: 340 KEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKS 399
Query: 272 GCLNLACQLFDQLTD 286
G ++L+ Q+F+ L D
Sbjct: 400 GDIDLSEQVFEDLDD 414
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 129/288 (44%), Gaps = 21/288 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+ LL LN KQVH L +GL L S L T+ SK S + +F IP
Sbjct: 456 VCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKD 515
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGH-WFQYGP 129
+ ++IS F + + A L++ +L T P+ T ++ C S H G
Sbjct: 516 NACWASMISGFNEYG-YLREAIGLFSEMLDDGT-SPDESTLAAVLTVC--SSHPSLPRGK 571
Query: 130 PLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H + L+ ++ D + ++L+N Y+K G L ++R ++D++ E D + ++L+
Sbjct: 572 EIHGYTLRAGIDKGMD--LGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQ 629
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
L + LF DM MS + + +++ A + S G H Y
Sbjct: 630 H------------GLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAY 677
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ + L VG++L+ MYSK G ++ C+ F Q+ D + A+I
Sbjct: 678 ITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALI 725
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 23/225 (10%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLIS 79
SL K++H L G+ S L+ + SK S A ++ +P ++LIS
Sbjct: 566 SLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLIS 625
Query: 80 SFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF- 138
++ H I F L+ R + +SF S+ KA S G +HA++ K
Sbjct: 626 GYSQHG-LIQDGFLLF-RDMVMSGFTMDSFAISSILKAAALSDE-SSLGAQVHAYITKIG 682
Query: 139 --LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXX 196
EP V +SLL Y+K+G + F QI+ PDL W L+
Sbjct: 683 LCTEPS----VGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKAN--- 735
Query: 197 XLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
EAL ++ M+ +P++VT V ++SACS+ G + +
Sbjct: 736 ---------EALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEE 771
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
L AH+L+ P+D F+ SLL++Y+ G + + LFD I +PD+ + N ++
Sbjct: 70 LQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMI------- 122
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
+ L E+L F M NE++ ++ISACS L A C+ +
Sbjct: 123 -----SGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTI 177
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ V +AL+D++SK A ++F + +C+N +I
Sbjct: 178 KMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTII 223
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 31/245 (12%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHS-SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
A +F +IP P V N +IS + H + L F L + N ++ S+ A
Sbjct: 103 AAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLG---FEANEISYGSVISA 159
Query: 118 CCGSGHWFQYGPPLHA-----HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS 172
C PL + H +K Y+ V+++L++ ++K R + +F
Sbjct: 160 CSA------LQAPLFSELVCCHTIKMGYFFYE-VVESALIDVFSKNLRFEDAYKVFRDSL 212
Query: 173 EPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALY-LFCDMQMSRRRPNEVTLVALIS 231
++ WNT++ + + A++ LF +M + ++P+ T ++++
Sbjct: 213 SANVYCWNTIIAGALR-------------NQNYGAVFDLFHEMCVGFQKPDSYTYSSVLA 259
Query: 232 ACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
AC++L L G +++ + + FV TA+VD+Y+KCG + A ++F ++ +
Sbjct: 260 ACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVS 318
Query: 292 YNAMI 296
+ M+
Sbjct: 319 WTVML 323
>AT3G21470.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:7563503-7565074 FORWARD
LENGTH=523
Length = 523
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 131/299 (43%), Gaps = 45/299 (15%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSH 84
K +H++ + G+ S L+++ K A +F +P V +N +I + S+
Sbjct: 66 KLLHSESIKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMSN 125
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA------CCGSGHWFQYGP--------- 129
+ LA L+ I ++ N+ T+ + K + F+ P
Sbjct: 126 GDAV-LASGLFEEI----SVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELKNVKAW 180
Query: 130 --PLHAHV--------LKFLE--PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
L +V KF E P + FV + +++ Y + G + +R +F ++ DL
Sbjct: 181 SVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLV 240
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
WNTL+ S +A+ F +MQ P+ VT+ +++SAC+ G
Sbjct: 241 IWNTLIAGYAQN------------GYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSG 288
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L G H + ++LN+FV AL+DMY+KCG L A +F+ ++ R C N+MI
Sbjct: 289 RLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMI 347
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A IF + + ++NTLI+ + + + +N + + +P++ T S+ AC
Sbjct: 227 ARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFN--MQGEGYEPDAVTVSSILSAC 284
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
SG G +H+ ++ + FV +L++ YAK G L + +F+ IS +A
Sbjct: 285 AQSGR-LDVGREVHS-LINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVAC 342
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
N+++ L EAL +F M+ +P+E+T +A+++AC + G
Sbjct: 343 CNSMISC------------LAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGF 390
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
L +G+ + ++K N L+ + + G L A +L ++
Sbjct: 391 LMEGLKIFSEMKTQDVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEM 436
>AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:18694816-18696657 REVERSE
LENGTH=613
Length = 613
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+N++IS + S + +A L+ + + NS + ++G A
Sbjct: 223 WNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMI-----------DGYVKHGRIEDA 271
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
L + P D A++++ YAK G + ++ LFDQ+ D+ +N+++
Sbjct: 272 KGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKY-- 329
Query: 194 XXXXLEDADLSLEALYLFCDMQM-SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN 252
+EAL +F DM+ S P++ TLV ++ A + LG LS+ + H Y++
Sbjct: 330 ----------HMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEK 379
Query: 253 NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
L +G AL+DMYSKCG + A +F+ + ++ +NAMIG
Sbjct: 380 QFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIG 424
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 222 NEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLF 281
++ +L ++ ACS LG + G+ H +L + L + F+ L+ +Y KCGCL L+ Q+F
Sbjct: 120 DKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMF 179
Query: 282 DQLTDRDTFCYNAMI 296
D++ RD+ YN+MI
Sbjct: 180 DRMPKRDSVSYNSMI 194
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 120/298 (40%), Gaps = 37/298 (12%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTI---------- 62
+ +L C + + + Q+H +++ TG+ ++ + ++ + Y
Sbjct: 16 IHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHV 75
Query: 63 ----FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
F + +P FL+N +I S SH A L ++ + + F+ + KAC
Sbjct: 76 CSFSFGEVEDP--FLWNAVIKSH-SHGKDPRQALLLLC-LMLENGVSVDKFSLSLVLKAC 131
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G + + G +H LK D F+Q L+ Y K G L +SR +FD++ + D +
Sbjct: 132 SRLG-FVKGGMQIHG-FLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVS 189
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
+N+++ L + A LF M M + L++ S S
Sbjct: 190 YNSMIDGYVK------------CGLIVSARELFDLMPMEMK-----NLISWNSMISGYAQ 232
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
S GV L + + + +++D Y K G + A LFD + RD + MI
Sbjct: 233 TSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMI 290
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 105/233 (45%), Gaps = 26/233 (11%)
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
+A T+F +P+ V YN++++ + + + A +++ + L P+ T + A
Sbjct: 301 HAKTLFDQMPHRDVVAYNSMMAGYVQNKYHME-ALEIFSDMEKESHLLPDDTTLVIVLPA 359
Query: 118 CCGSGHWFQYGPPLHAHVLK---FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
G +H ++++ +L + +L++ Y+K G + + +F+ I
Sbjct: 360 IAQLGR-LSKAIDMHLYIVEKQFYLGGK----LGVALIDMYSKCGSIQHAMLVFEGIENK 414
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
+ WN ++ L L A + ++ +P+++T V +++ACS
Sbjct: 415 SIDHWNAMI------------GGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACS 462
Query: 235 NLGALSQGVWTHCY-LLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQL 284
+ G + +G+ C+ L+R K+ + +VD+ S+ G + LA L +++
Sbjct: 463 HSGLVKEGLL--CFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEM 513
>AT1G74630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:28030521-28032452 FORWARD
LENGTH=643
Length = 643
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 137/332 (41%), Gaps = 58/332 (17%)
Query: 10 HPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLL---TISSKLASTYALTIFSSI 66
H L LL C +L L Q+H + G+ +Y L+ IS A YA +
Sbjct: 6 HHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCF 65
Query: 67 PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQ 126
P P F++NTL+ + S S + H + +++ ++ + P+SF+F + KA + +
Sbjct: 66 PEPDAFMFNTLVRGY-SESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAV-ENFRSLR 123
Query: 127 YGPPLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA-------- 177
G +H LK LE FV +L+ Y G + +R +FD++ +P+L
Sbjct: 124 TGFQMHCQALKHGLESHL--FVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITA 181
Query: 178 -----------------------TWNTLLXXXXXXXXXXXXXXL-------EDADLSL-- 205
+WN +L + +D S
Sbjct: 182 CFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMI 241
Query: 206 ----------EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLK 255
E+ F ++Q + PNEV+L ++SACS G+ G H ++ +
Sbjct: 242 VGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYS 301
Query: 256 LNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
V AL+DMYS+CG + +A +F+ + ++
Sbjct: 302 WIVSVNNALIDMYSRCGNVPMARLVFEGMQEK 333
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A IFS +P+ ++T+I +H+ + +F LY R L + PN + + AC
Sbjct: 222 AKRIFSEMPHRDDVSWSTMIVGI-AHNGSFNESF-LYFRELQRAGMSPNEVSLTGVLSAC 279
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPD- 175
SG F++G LH V K Y V +L++ Y++ G + ++R +F+ + E
Sbjct: 280 SQSGS-FEFGKILHGFVEK---AGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC 335
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
+ +W +++ L EA+ LF +M P+ ++ ++L+ ACS+
Sbjct: 336 IVSWTSMI------------AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSH 383
Query: 236 LGALSQG 242
G + +G
Sbjct: 384 AGLIEEG 390
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 17/127 (13%)
Query: 173 EPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRR---PNEVTLVAL 229
EPD +NTL+ ++D ++ +F ++M R+ P+ + +
Sbjct: 67 EPDAFMFNTLVRGYS------------ESDEPHNSVAVF--VEMMRKGFVFPDSFSFAFV 112
Query: 230 ISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDT 289
I A N +L G HC L++ L+ + FVGT L+ MY CGC+ A ++FD++ +
Sbjct: 113 IKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNL 172
Query: 290 FCYNAMI 296
+NA+I
Sbjct: 173 VAWNAVI 179
>AT1G28690.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:10080042-10081604 REVERSE
LENGTH=520
Length = 520
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 132/296 (44%), Gaps = 28/296 (9%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
K++HA ++ TG LL + K +YA +F +P PT+ YN +IS + H
Sbjct: 54 KKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKH 113
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL----HAHVLKFLE 140
L L R +++ + + +T + KA G L HA ++K +
Sbjct: 114 GLVKELLL-LVQR-MSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIK-CD 170
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA--------------------TWN 180
D + +L++ Y K G+L +R +F+ + + ++ +N
Sbjct: 171 VELDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFN 230
Query: 181 TLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS 240
T + + ++ ++ MQ + PN T ++I ACS L +
Sbjct: 231 TTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHE 290
Query: 241 QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G H ++++ + + +G++L+DMY+KCG +N A ++FDQ+ +++ F + +MI
Sbjct: 291 VGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMI 346
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 20/232 (8%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A IF++ + +YN ++ F+ + +Y + PN TF S+ AC
Sbjct: 225 AEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYIS-MQRAGFHPNISTFASVIGAC 283
Query: 119 CG-SGHWFQYGPPLHAHVLKFLEPPYDHF-VQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
+ H + G +HA ++K Y H + +SLL+ YAK G + +R +FDQ+ E ++
Sbjct: 284 SVLTSH--EVGQQVHAQIMK--SGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNV 339
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
+W +++ EAL LF M+ R PN VT + +SACS+
Sbjct: 340 FSWTSMIDGYGKNGNPE------------EALELFTRMKEFRIEPNYVTFLGALSACSHS 387
Query: 237 GALSQGVWTHCYLLRN-NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
G + +G + R+ ++K +VD+ + G LN A + + +R
Sbjct: 388 GLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPER 439
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
+ G +HA ++K P D + LL + K G L +R +FD++ +P L+ +N ++
Sbjct: 51 KAGKKIHADIIKTGFQP-DLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISG 109
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGAL-----S 240
L E L L M S + + TL ++ A ++ G+ S
Sbjct: 110 YLKH------------GLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRS 157
Query: 241 QGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H +++ +++L+ + TALVD Y K G L A +F+ + D + C +MI
Sbjct: 158 LCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMI 213
>AT4G21065.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11246375-11247763 FORWARD
LENGTH=462
Length = 462
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 83/151 (54%), Gaps = 12/151 (7%)
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
+VQ SLL+ YA G + + +FD++ E DL WN+++ +
Sbjct: 24 YVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING------------FAENGKPE 71
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALV 265
EAL L+ +M +P+ T+V+L+SAC+ +GAL+ G H Y+++ L N L+
Sbjct: 72 EALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLL 131
Query: 266 DMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
D+Y++CG + A LFD++ D+++ + ++I
Sbjct: 132 DLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 162
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 120/263 (45%), Gaps = 25/263 (9%)
Query: 28 VHAQMLTTGLALHTYC---LSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSH 84
+H+ ++ +G Y L HL +AS Y +F +P + +N++I+ F +
Sbjct: 10 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY--KVFDKMPEKDLVAWNSVINGF-AE 66
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ + A +LY + K ++P+ FT SL AC G G +H +++K
Sbjct: 67 NGKPEEALALYTE-MNSKGIKPDGFTIVSLLSACAKIGA-LTLGKRVHVYMIKVGLTRNL 124
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
H LL+ YA+ GR+ ++ LFD++ + + +W +L+ L
Sbjct: 125 HSSNV-LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG------------LAVNGFG 171
Query: 205 LEALYLFCDMQMSRRR-PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG-- 261
EA+ LF M+ + P E+T V ++ ACS+ G + +G + + +R K+ +
Sbjct: 172 KEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG-FEYFRRMREEYKIEPRIEHF 230
Query: 262 TALVDMYSKCGCLNLACQLFDQL 284
+VD+ ++ G + A + +
Sbjct: 231 GCMVDLLARAGQVKKAYEYIKSM 253
>AT5G52850.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:21414935-21417616 REVERSE
LENGTH=893
Length = 893
Score = 90.5 bits (223), Expect = 1e-18, Method: Composition-based stats.
Identities = 79/289 (27%), Positives = 138/289 (47%), Gaps = 24/289 (8%)
Query: 13 LKLLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPN 68
+++L C S N+ + +H ++ GL + ++LL++ K + A +F + +
Sbjct: 28 IRILSFCES-NSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSH 86
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
TVF + +IS+FT S + A SL+ ++A T PN FTF S+ ++C G YG
Sbjct: 87 RTVFAWTVMISAFTK-SQEFASALSLFEEMMASGT-HPNEFTFSSVVRSCAGLRD-ISYG 143
Query: 129 PPLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
+H V+K E + V +SL + Y+K G+ + LF + D +W ++
Sbjct: 144 GRVHGSVIKTGFEG--NSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMI---- 197
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
L A EAL + +M + PNE T V L+ A S LG L G H
Sbjct: 198 --------SSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLG-LEFGKTIHS 248
Query: 248 YLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ + LN + T+LVD YS+ + A ++ + ++D F + +++
Sbjct: 249 NIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVV 297
Score = 82.4 bits (202), Expect = 3e-16, Method: Composition-based stats.
Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 20/288 (6%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY--ALTIFSSIPNP 69
IL L SL+ KQ+H+Q + G T + L+ + K +++ A +F ++ +P
Sbjct: 331 ILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSP 390
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
V + TLI H + F L ++ + ++PN T + +AC H +
Sbjct: 391 NVVSWTTLILGLVDHGF-VQDCFGLLMEMVK-REVEPNVVTLSGVLRACSKLRH-VRRVL 447
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+HA++L+ + V SL++ YA ++ + + + D T+ +L+
Sbjct: 448 EIHAYLLR-RHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNE- 505
Query: 190 XXXXXXXXLEDADLSLEAL-YLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
L +++L + Y++ D R ++++L ISA +NLGAL G HCY
Sbjct: 506 --------LGKHEMALSVINYMYGD----GIRMDQLSLPGFISASANLGALETGKHLHCY 553
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ V +LVDMYSKCG L A ++F+++ D +N ++
Sbjct: 554 SVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLV 601
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 63/272 (23%), Positives = 123/272 (45%), Gaps = 19/272 (6%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHS 85
+VH ++ TG ++ S L + SK A +FSS+ N + +ISS +
Sbjct: 145 RVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVG-A 203
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
+ A Y+ ++ + PN FTF L A G ++G +H++++ P +
Sbjct: 204 RKWREALQFYSEMVK-AGVPPNEFTFVKLLGASSFLG--LEFGKTIHSNII-VRGIPLNV 259
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
++ SL++FY+++ ++ + + + E D+ W +++ +
Sbjct: 260 VLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLR------------AK 307
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALV 265
EA+ F +M+ +PN T A++S CS + +L G H ++ + + VG ALV
Sbjct: 308 EAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALV 367
Query: 266 DMYSKCGCLNL-ACQLFDQLTDRDTFCYNAMI 296
DMY KC + A ++F + + + +I
Sbjct: 368 DMYMKCSASEVEASRVFGAMVSPNVVSWTTLI 399
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 27/230 (11%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLL-TISSKLASTYALTIFSSIPNPT 70
+L+ K + + ++HA +L + + L+ +S YA + S+
Sbjct: 433 VLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRD 492
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
Y +L++ F +A S+ N + ++ + + P A G + G
Sbjct: 493 NITYTSLVTRFNELGKH-EMALSVINYMYG-DGIRMDQLSLPGFISASANLGA-LETGKH 549
Query: 131 LHAHVLKFLEPPYDHFVQA-----SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
LH + +K F A SL++ Y+K G L ++ +F++I+ PD+ +WN L+
Sbjct: 550 LHCYSVK------SGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSG 603
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
L AL F +M+M P+ VT + L+SACSN
Sbjct: 604 ------------LASNGFISSALSAFEEMRMKETEPDSVTFLILLSACSN 641
>AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide
repeat (TPR)-like superfamily protein |
chr1:5329111-5331711 FORWARD LENGTH=866
Length = 866
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 18/267 (6%)
Query: 30 AQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIH 89
+ M + G+ L L+ + + + + Y +F + +F +N L+ +
Sbjct: 122 SSMSSLGVELGNAFLAMFVRFGNLVDAWY---VFGKMSERNLFSWNVLVGGYAKQG-YFD 177
Query: 90 LAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQA 149
A LY+R+L ++P+ +TFP + + C G G +H HV+++ D V
Sbjct: 178 EAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPD-LARGKEVHVHVVRY-GYELDIDVVN 235
Query: 150 SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALY 209
+L+ Y K G + +R LFD++ D+ +WN ++ + + E L
Sbjct: 236 ALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYF------------ENGMCHEGLE 283
Query: 210 LFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYS 269
LF M+ P+ +TL ++ISAC LG G H Y++ ++ V +L MY
Sbjct: 284 LFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYL 343
Query: 270 KCGCLNLACQLFDQLTDRDTFCYNAMI 296
G A +LF ++ +D + MI
Sbjct: 344 NAGSWREAEKLFSRMERKDIVSWTTMI 370
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 23/274 (8%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH 84
+ +HA ++TTG A+ + L + S A +FS + + + T+IS + +
Sbjct: 317 RDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY-EY 375
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ A Y R++ +++P+ T ++ AC G G LH +K Y
Sbjct: 376 NFLPDKAIDTY-RMMDQDSVKPDEITVAAVLSACATLGD-LDTGVELHKLAIKARLISY- 432
Query: 145 HFVQASLLNFYAKYGRLCVSRCL--FDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDAD 202
V +L+N Y+K C+ + L F I ++ +W +++ L +
Sbjct: 433 VIVANNLINMYSKCK--CIDKALDIFHNIPRKNVISWTSIIAG------------LRLNN 478
Query: 203 LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
EAL M+M+ + PN +TL A ++AC+ +GAL G H ++LR + L+ F+
Sbjct: 479 RCFEALIFLRQMKMTLQ-PNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN 537
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
AL+DMY +CG +N A F+ +D +N ++
Sbjct: 538 ALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILL 570
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 30/223 (13%)
Query: 33 LTTGLALHTYCLSHLLT----ISSKLASTY--------ALTIFSSIPNPTVFLYNTLISS 80
L TG+ LH + L +++ L + Y AL IF +IP V + ++I+
Sbjct: 414 LDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAG 473
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLE 140
++ L + TLQPN+ T + AC G G +HAHVL+
Sbjct: 474 LRLNNRCFEALIFLRQMKM---TLQPNAITLTAALAACARIGA-LMCGKEIHAHVLR-TG 528
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
D F+ +LL+ Y + GR+ + F+ + D+ +WN LL E
Sbjct: 529 VGLDDFLPNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILLTGYS-----------ER 576
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
S+ + LF M SR RP+E+T ++L+ CS + QG+
Sbjct: 577 GQGSM-VVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGL 618
>AT1G25360.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:8894428-8896800 FORWARD
LENGTH=790
Length = 790
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 24/248 (9%)
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
N + YN +IS + + A + R+++ ++ + FT+PS+ +AC +G Q
Sbjct: 248 NMKLVAYNAMISGYVNRGF-YQEALEMVRRMVS-SGIELDEFTYPSVIRACATAG-LLQL 304
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G +HA+VL+ + + HF SL++ Y K G+ +R +F+++ DL +WN LL
Sbjct: 305 GKQVHAYVLRREDFSF-HF-DNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 362
Query: 188 XXXXXXXXX-------------------XLEDADLSLEALYLFCDMQMSRRRPNEVTLVA 228
L + E L LF M+ P +
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422
Query: 229 LISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRD 288
I +C+ LGA G H LL+ + G AL+ MY+KCG + A Q+F + D
Sbjct: 423 AIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLD 482
Query: 289 TFCYNAMI 296
+ +NA+I
Sbjct: 483 SVSWNALI 490
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 23/237 (9%)
Query: 8 FNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIP 67
F++ ++ L KC + + + +M L LS ++ S + A IF +
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVS-SGHIGE--AKLIFKEMK 378
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
+ + +IS + L++ + + +P + F K+C G +
Sbjct: 379 EKNILSWMIMISGLAENGFG-EEGLKLFS-CMKREGFEPCDYAFSGAIKSCAVLGAYCN- 435
Query: 128 GPPLHAHVLKFLEPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
G HA +LK +D + A +L+ YAK G + +R +F + D +WN L+
Sbjct: 436 GQQYHAQLLKI---GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
L EA+ ++ +M RP+ +TL+ +++ACS+ G + QG
Sbjct: 493 ------------LGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG 537
>AT2G22070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:9383602-9385962 FORWARD LENGTH=786
Length = 786
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 143/326 (43%), Gaps = 54/326 (16%)
Query: 14 KLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVF 72
K + K + T + VH +++ +GL Y +++L+ + SK + +A +F +P T F
Sbjct: 22 KSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAF 81
Query: 73 LYNTLISSFTSHS------------------------------SQIHLAFSLYNRILAHK 102
+NT++S+++ Q H A + ++ +
Sbjct: 82 SWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMV-KE 140
Query: 103 TLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLC 162
++P FT ++ A + + G +H+ ++K L + V SLLN YAK G
Sbjct: 141 GIEPTQFTLTNVL-ASVAATRCMETGKKVHSFIVK-LGLRGNVSVSNSLLNMYAKCGDPM 198
Query: 163 VSRCLFDQISEPDLATWNTLLX----XXXXXXXXXXXXXLEDADL--------------- 203
+++ +FD++ D+++WN ++ + + D+
Sbjct: 199 MAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGY 258
Query: 204 SLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
L AL +F M + S P+ TL +++SAC+NL L G H +++ ++ V
Sbjct: 259 DLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLN 318
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRD 288
AL+ MYS+CG + A +L +Q +D
Sbjct: 319 ALISMYSRCGGVETARRLIEQRGTKD 344
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 29/262 (11%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A+ F + + +N++IS F + A +++++L L P+ FT S+ AC
Sbjct: 231 AMAQFEQMAERDIVTWNSMISGFNQRGYDLR-ALDIFSKMLRDSLLSPDRFTLASVLSAC 289
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYD--HFVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
G +H+H++ +D V +L++ Y++ G + +R L +Q DL
Sbjct: 290 ANLEK-LCIGKQIHSHIVT---TGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Query: 177 ------ATWNTLLXXXXXXXXXXXXXXLEDADLSL---------------EALYLFCDMQ 215
A + + L+D D+ EA+ LF M
Sbjct: 346 KIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMV 405
Query: 216 MSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLN 275
+RPN TL A++S S+L +LS G H +++ + V AL+ MY+K G +
Sbjct: 406 GGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNIT 465
Query: 276 LACQLFDQLT-DRDTFCYNAMI 296
A + FD + +RDT + +MI
Sbjct: 466 SASRAFDLIRCERDTVSWTSMI 487
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 125/282 (44%), Gaps = 29/282 (10%)
Query: 10 HPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPN 68
+ ++ + +C + T +++ Q T L + + + LL KL A IF S+ +
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGF--TALLDGYIKLGDMNQAKNIFVSLKD 375
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
V + +I + H S A +L+ R + +PNS+T ++ +G
Sbjct: 376 RDVVAWTAMIVGYEQHGSYGE-AINLF-RSMVGGGQRPNSYTLAAMLSVASSLAS-LSHG 432
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS-EPDLATWNTLLXXXX 187
+H +K E Y V +L+ YAK G + + FD I E D +W +++
Sbjct: 433 KQIHGSAVKSGEI-YSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIA-- 489
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
L + EAL LF M M RP+ +T V + SAC++ G ++QG +
Sbjct: 490 ----------LAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGR-QYF 538
Query: 248 YLLRNNLKLNRFVGT-----ALVDMYSKCGCLNLACQLFDQL 284
++++ +++ + T +VD++ + G L A + +++
Sbjct: 539 DMMKD---VDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
+ G LHA L P F ++L+ Y+K G + + FDQ+ + D +W T++
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
+A+ + DM P + TL ++++ + + G
Sbjct: 121 YKNIGQYH------------KAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKV 168
Query: 246 HCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++++ L+ N V +L++MY+KCG +A +FD++ RD +NAMI
Sbjct: 169 HSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219
>AT1G77010.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28942710-28944797 FORWARD
LENGTH=695
Length = 695
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 145/365 (39%), Gaps = 84/365 (23%)
Query: 13 LKLLQKCHSLNT---LKQVHAQMLTTG-LALHTYCLSHLLTISSKLAS-TYALTIFSSIP 67
++LLQ C S N +Q + +L G L+ +HLL + S+ A +F +P
Sbjct: 30 VRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMP 89
Query: 68 NPTVFLYNTLISSFT------------------------------SHSSQIHLAFSLYN- 96
+ F +NT+I + + + ++ +A L+N
Sbjct: 90 DRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNA 149
Query: 97 --------------------------RILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
R+ ++ T ++ KAC + G
Sbjct: 150 MPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKAC-AELEALKCGKQ 208
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
+HA +L D + +SL+N YAK G L ++ + +QI EPD + + L+
Sbjct: 209 IHAQIL-IGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCG 267
Query: 191 XXXXXXXLEDA-------------------DLSLEALYLFCDMQMSRRRPNEVTLVALIS 231
L D ++ +EAL LF +M+ + R + TL A+I+
Sbjct: 268 RVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRTLAAVIN 326
Query: 232 ACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
AC LG L G HC+ + L + V + L+DMYSKCG AC+LF ++ DT
Sbjct: 327 ACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 386
Query: 292 YNAMI 296
N+MI
Sbjct: 387 LNSMI 391
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 141/347 (40%), Gaps = 78/347 (22%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSK------------------ 53
+LK + +L KQ+HAQ+L G+ + S L+ + +K
Sbjct: 193 VLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPD 252
Query: 54 ------LASTYA--------LTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRIL 99
L S YA +F N V L+N++IS + +++ ++ A L+N +
Sbjct: 253 DHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKME-ALVLFNEM- 310
Query: 100 AHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF--------------------- 138
+ +S T ++ AC G G + + G +H H KF
Sbjct: 311 -RNETREDSRTLAAVINACIGLG-FLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGS 368
Query: 139 -LE--------PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+E YD + S++ Y GR+ ++ +F++I L +WN++
Sbjct: 369 PMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSM------- 421
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
++E L F M +EV+L ++ISAC+++ +L G
Sbjct: 422 -----TNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARA 476
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L ++ V ++L+D+Y KCG + ++FD + D +N+MI
Sbjct: 477 TIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMI 523
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 55/299 (18%)
Query: 22 LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISS 80
L T KQ+H GL S LL + SK S A +FS + + L N++I
Sbjct: 334 LETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKV 393
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFT---------------FPSLFK--------- 116
+ S +I A ++ RI + NS T F + K
Sbjct: 394 YFS-CGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVS 452
Query: 117 -----ACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQI 171
+ C S + G + A + D V +SL++ Y K G + R +FD +
Sbjct: 453 LSSVISACASISSLELGEQVFARA-TIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM 511
Query: 172 SEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALIS 231
+ D WN+++ EA+ LF M ++ RP ++T + +++
Sbjct: 512 VKSDEVPWNSMISGYATNGQ------------GFEAIDLFKKMSVAGIRPTQITFMVVLT 559
Query: 232 ACSNLGALSQGVWTHCYLLRNNLKLNR-FVG-----TALVDMYSKCGCLNLACQLFDQL 284
AC+ G + +G L ++K++ FV + +VD+ ++ G + A L +++
Sbjct: 560 ACNYCGLVEEG-----RKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEM 613
>AT2G39620.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:16518968-16521478 REVERSE
LENGTH=836
Length = 836
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 133/300 (44%), Gaps = 38/300 (12%)
Query: 6 PIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYAL----- 60
PI +L +L++C + L QVH ++ +GL H ++L + Y+L
Sbjct: 2 PINYTNLLLMLRECKNFRCLLQVHGSLIVSGLKPH-----------NQLINAYSLFQRQD 50
Query: 61 ---TIFSSIPNPTVFLYNTLISSFTSHSSQIHL-AFSLYNRILAHKTLQPNSFTFPSLFK 116
IF S+ +P V L+N++I +T + +H A + + K + P+ ++F K
Sbjct: 51 LSRVIFDSVRDPGVVLWNSMIRGYTR--AGLHREALGFFGYMSEEKGIDPDKYSFTFALK 108
Query: 117 ACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
AC GS F+ G +H ++ + D ++ +L+ Y K L +R +FD++ D+
Sbjct: 109 ACAGSMD-FKKGLRIH-DLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDV 166
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
TWNT++ L S AL LF DM+ + V+L LI A S L
Sbjct: 167 VTWNTMV------------SGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKL 214
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H +++ + L+DMY C L A +F+++ +D + M+
Sbjct: 215 EKSDVCRCLHGLVIKKGFIFA--FSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMM 272
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 12/152 (7%)
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D V SL++ Y+K G L ++ LF I + D+ +W+ ++ E A
Sbjct: 334 DVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASY------------EQAGQ 381
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
EA+ LF DM +PN VTL +++ C+ + A G HCY ++ +++ TA
Sbjct: 382 HDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATA 441
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
++ MY+KCG + A + F++L +D +NA+
Sbjct: 442 VISMYAKCGRFSPALKAFERLPIKDAVAFNAL 473
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 21/241 (8%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
AL F +P +N L +T + AF +Y + H P+S T + + C
Sbjct: 455 ALKAFERLPIKDAVAFNALAQGYT-QIGDANKAFDVYKNMKLHGVC-PDSRTMVGMLQTC 512
Query: 119 --CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS-EPD 175
C + G ++ ++K H A L+N + K L + LFD+ E
Sbjct: 513 AFCSD---YARGSCVYGQIIKHGFDSECHVAHA-LINMFTKCDALAAAIVLFDKCGFEKS 568
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
+WN ++ EA+ F M++ + +PN VT V ++ A +
Sbjct: 569 TVSWNIMMNGYLLHGQAE------------EAVATFRQMKVEKFQPNAVTFVNIVRAAAE 616
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
L AL G+ H L++ VG +LVDMY+KCG + + + F +++++ +N M
Sbjct: 617 LSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTM 676
Query: 296 I 296
+
Sbjct: 677 L 677
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 129/278 (46%), Gaps = 31/278 (11%)
Query: 33 LTTGLALHTYCLSHLL----TISSKLASTY--------ALTIFSSIPNPTVFLYNTLISS 80
L G+A+H Y + L ++++ L S Y A +F +I + V ++ +I+S
Sbjct: 316 LVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIAS 375
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF-L 139
+ + Q A SL+ R + ++PN+ T S+ + C G + G +H + +K +
Sbjct: 376 Y-EQAGQHDEAISLF-RDMMRIHIKPNAVTLTSVLQGCAGVAA-SRLGKSIHCYAIKADI 432
Query: 140 EPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLE 199
E + ++++ YAK GR + F+++ D +N L +
Sbjct: 433 ESELE--TATAVISMYAKCGRFSPALKAFERLPIKDAVAFNAL---------AQGYTQIG 481
Query: 200 DADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRF 259
DA+ +A ++ +M++ P+ T+V ++ C+ ++G + ++++
Sbjct: 482 DAN---KAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECH 538
Query: 260 VGTALVDMYSKCGCLNLACQLFDQLT-DRDTFCYNAMI 296
V AL++M++KC L A LFD+ ++ T +N M+
Sbjct: 539 VAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMM 576
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 114/286 (39%), Gaps = 49/286 (17%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSH- 84
++H + GL Y + L+ + K A +F + V +NT++S +
Sbjct: 121 RIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNG 180
Query: 85 -SSQIHLAF-------------SLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
SS L F SLYN I A L+ +
Sbjct: 181 CSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVC------------------RC 222
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH V+K + + L++ Y L + +F+++ D ++W T++
Sbjct: 223 LHGLVIK---KGFIFAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNG 279
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
E L LF M+ R N+V + + A + +G L +G+ H Y +
Sbjct: 280 FFE------------EVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAV 327
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ L + V T+L+ MYSKCG L +A QLF + DRD ++AMI
Sbjct: 328 QQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMI 373
>AT1G22830.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:8076921-8079032 FORWARD
LENGTH=703
Length = 703
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 39/314 (12%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSK---LASTYALTIFSSIPN 68
LL C N +Q+HA +++GL + + L+T S L +T S I +
Sbjct: 89 LLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEILH 148
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
P +N LI S+ + + + S+Y R+++ K ++ + FT+PS+ KAC F YG
Sbjct: 149 P--LPWNVLIGSYI-RNKRFQESVSVYKRMMS-KGIRADEFTYPSVIKACAALLD-FAYG 203
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H + + + +V +L++ Y ++G++ V+R LFD++SE D +WN ++
Sbjct: 204 RVVHGSI-EVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTS 262
Query: 189 XXXXXXXXXLED-----------------------ADLSLEALYLFCDMQMSRRRPNEVT 225
L D A + AL M+ R V
Sbjct: 263 EEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVA 322
Query: 226 LVALISACSNLGALSQGVWTHCYLLRN---NLKLNRFVGTALVDMYSKCGCLNLACQLFD 282
++ + ACS++GAL G HC ++R+ + ++ V +L+ MYS+C L A +F
Sbjct: 323 MINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDN-VRNSLITMYSRCSDLRHAFIVFQ 381
Query: 283 QLTDRDTFCYNAMI 296
Q+ +N++I
Sbjct: 382 QVEANSLSTWNSII 395
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 47 LLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQ 105
L+T+ S+ + +A +F + ++ +N++IS F + +F L +L+
Sbjct: 363 LITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLS--GFH 420
Query: 106 PNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSR 165
PN T S+ G+ Q+G H ++L+ + SL++ YAK G + ++
Sbjct: 421 PNHITLASILPLFARVGN-LQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAK 479
Query: 166 CLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVT 225
+FD + + D T+ +L+ L ++ AL F DM S +P+ VT
Sbjct: 480 RVFDSMRKRDKVTYTSLIDGYGR---------LGKGEV---ALAWFKDMDRSGIKPDHVT 527
Query: 226 LVALISACSNLGALSQGVW-----THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
+VA++SACS+ + +G W H + +R L+L + + +VD+Y + G L+ A +
Sbjct: 528 MVAVLSACSHSNLVREGHWLFTKMEHVFGIR--LRLEHY--SCMVDLYCRAGYLDKARDI 583
Query: 281 F 281
F
Sbjct: 584 F 584
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 15/184 (8%)
Query: 115 FKACCGSGHWFQYGPPLHAHVLKFLEPPYD-HFVQASLLNFYAKYGRLCVSRCLFDQISE 173
KAC G ++G H V++ +D V+ SL+ Y++ L + +F Q+
Sbjct: 327 LKACSHIGA-LKWGKVFHCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEA 385
Query: 174 PDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISAC 233
L+TWN+++ + S E +L +M +S PN +TL +++
Sbjct: 386 NSLSTWNSIISGFAYN------------ERSEETSFLLKEMLLSGFHPNHITLASILPLF 433
Query: 234 SNLGALSQGVWTHCYLL-RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCY 292
+ +G L G HCY+L R + K + +LVDMY+K G + A ++FD + RD Y
Sbjct: 434 ARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTY 493
Query: 293 NAMI 296
++I
Sbjct: 494 TSLI 497
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 16/189 (8%)
Query: 109 FTFPSLFKACCGSGHWFQYGPPLHAH-VLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCL 167
++ SL C G F G LHAH + LE +D + L+ FY+ + L ++ +
Sbjct: 84 YSSASLLSTCVGFNE-FVPGQQLHAHCISSGLE--FDSVLVPKLVTFYSAFNLLDEAQTI 140
Query: 168 FDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLV 227
+ WN L+ E++ ++ M R +E T
Sbjct: 141 TENSEILHPLPWNVLIGSYIRNKRFQ------------ESVSVYKRMMSKGIRADEFTYP 188
Query: 228 ALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
++I AC+ L + G H + ++ + N +V AL+ MY + G +++A +LFD++++R
Sbjct: 189 SVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSER 248
Query: 288 DTFCYNAMI 296
D +NA+I
Sbjct: 249 DAVSWNAII 257
>AT1G22830.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:8076921-8079032 FORWARD
LENGTH=703
Length = 703
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 39/314 (12%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSK---LASTYALTIFSSIPN 68
LL C N +Q+HA +++GL + + L+T S L +T S I +
Sbjct: 89 LLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEILH 148
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
P +N LI S+ + + + S+Y R+++ K ++ + FT+PS+ KAC F YG
Sbjct: 149 P--LPWNVLIGSYI-RNKRFQESVSVYKRMMS-KGIRADEFTYPSVIKACAALLD-FAYG 203
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H + + + +V +L++ Y ++G++ V+R LFD++SE D +WN ++
Sbjct: 204 RVVHGSI-EVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTS 262
Query: 189 XXXXXXXXXLED-----------------------ADLSLEALYLFCDMQMSRRRPNEVT 225
L D A + AL M+ R V
Sbjct: 263 EEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVA 322
Query: 226 LVALISACSNLGALSQGVWTHCYLLRN---NLKLNRFVGTALVDMYSKCGCLNLACQLFD 282
++ + ACS++GAL G HC ++R+ + ++ V +L+ MYS+C L A +F
Sbjct: 323 MINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDN-VRNSLITMYSRCSDLRHAFIVFQ 381
Query: 283 QLTDRDTFCYNAMI 296
Q+ +N++I
Sbjct: 382 QVEANSLSTWNSII 395
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 47 LLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQ 105
L+T+ S+ + +A +F + ++ +N++IS F + +F L +L+
Sbjct: 363 LITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLS--GFH 420
Query: 106 PNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSR 165
PN T S+ G+ Q+G H ++L+ + SL++ YAK G + ++
Sbjct: 421 PNHITLASILPLFARVGN-LQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAK 479
Query: 166 CLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVT 225
+FD + + D T+ +L+ L ++ AL F DM S +P+ VT
Sbjct: 480 RVFDSMRKRDKVTYTSLIDGYGR---------LGKGEV---ALAWFKDMDRSGIKPDHVT 527
Query: 226 LVALISACSNLGALSQGVW-----THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
+VA++SACS+ + +G W H + +R L+L + + +VD+Y + G L+ A +
Sbjct: 528 MVAVLSACSHSNLVREGHWLFTKMEHVFGIR--LRLEHY--SCMVDLYCRAGYLDKARDI 583
Query: 281 F 281
F
Sbjct: 584 F 584
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 15/184 (8%)
Query: 115 FKACCGSGHWFQYGPPLHAHVLKFLEPPYD-HFVQASLLNFYAKYGRLCVSRCLFDQISE 173
KAC G ++G H V++ +D V+ SL+ Y++ L + +F Q+
Sbjct: 327 LKACSHIGA-LKWGKVFHCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEA 385
Query: 174 PDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISAC 233
L+TWN+++ + S E +L +M +S PN +TL +++
Sbjct: 386 NSLSTWNSIISGFAYN------------ERSEETSFLLKEMLLSGFHPNHITLASILPLF 433
Query: 234 SNLGALSQGVWTHCYLL-RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCY 292
+ +G L G HCY+L R + K + +LVDMY+K G + A ++FD + RD Y
Sbjct: 434 ARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTY 493
Query: 293 NAMI 296
++I
Sbjct: 494 TSLI 497
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 16/189 (8%)
Query: 109 FTFPSLFKACCGSGHWFQYGPPLHAH-VLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCL 167
++ SL C G F G LHAH + LE +D + L+ FY+ + L ++ +
Sbjct: 84 YSSASLLSTCVGFNE-FVPGQQLHAHCISSGLE--FDSVLVPKLVTFYSAFNLLDEAQTI 140
Query: 168 FDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLV 227
+ WN L+ E++ ++ M R +E T
Sbjct: 141 TENSEILHPLPWNVLIGSYIRNKRFQ------------ESVSVYKRMMSKGIRADEFTYP 188
Query: 228 ALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
++I AC+ L + G H + ++ + N +V AL+ MY + G +++A +LFD++++R
Sbjct: 189 SVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSER 248
Query: 288 DTFCYNAMI 296
D +NA+I
Sbjct: 249 DAVSWNAII 257
>AT4G19191.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10496228-10498192 FORWARD
LENGTH=654
Length = 654
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 132/292 (45%), Gaps = 37/292 (12%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIP--NPT 70
LKLL+ H++ V Q+ + TY L S+KL +F +I + T
Sbjct: 169 LKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLD-SAKL-------VFEAIDRGDRT 220
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +N++ +++ AF LY +L + +P+ TF +L A C + G
Sbjct: 221 VVSWNSMFKAYSVFGEAFD-AFGLYCLML-REEFKPDLSTFINL-AASCQNPETLTQGRL 277
Query: 131 LHAHVLKFLEPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H+H + D ++A + ++ Y+K C +R LFD ++ +W ++
Sbjct: 278 IHSHAIHL---GTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYA- 333
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
E D+ EAL LF M S +P+ VTL++LIS C G+L G W
Sbjct: 334 ----------EKGDMD-EALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDA- 381
Query: 249 LLRNNL----KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
R ++ + N + AL+DMYSKCG ++ A +FD ++ + MI
Sbjct: 382 --RADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMI 431
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 24/205 (11%)
Query: 97 RILAHKTLQPNSFTFPSLFKACCGSGHWFQYG--PPLHAHVLKFLEPPY--DHFVQASLL 152
R + +PN+FTFP + KAC G +HAH++K P+ D FV + +
Sbjct: 41 REMKRGGFEPNNFTFPFVAKACA---RLADVGCCEMVHAHLIK---SPFWSDVFVGTATV 94
Query: 153 NFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFC 212
+ + K + + +F+++ E D TWN +L +A LF
Sbjct: 95 DMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD------------KAFSLFR 142
Query: 213 DMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCG 272
+M+++ P+ VT++ LI + S +L H +R + + V + Y KCG
Sbjct: 143 EMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCG 202
Query: 273 CLNLACQLFDQLT--DRDTFCYNAM 295
L+ A +F+ + DR +N+M
Sbjct: 203 DLDSAKLVFEAIDRGDRTVVSWNSM 227
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 130/291 (44%), Gaps = 23/291 (7%)
Query: 13 LKLLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPN 68
+ L C + TL Q +H+ + G ++ +++ SK T A +F + +
Sbjct: 260 INLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTS 319
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
T + +IS + + + A +L++ ++ +P+ T SL C G + G
Sbjct: 320 RTCVSWTVMISGY-AEKGDMDEALALFHAMIKSGE-KPDLVTLLSLISGCGKFGS-LETG 376
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+ A + + + +L++ Y+K G + +R +FD E + TW T++
Sbjct: 377 KWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYAL 436
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
+ LEAL LF M +PN +T +A++ AC++ G+L +G W + +
Sbjct: 437 N------------GIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKG-WEYFH 483
Query: 249 LLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQLTDR-DTFCYNAMI 296
+++ ++ + + +VD+ + G L A +L ++ + D + A++
Sbjct: 484 IMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALL 534
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
+E+L LF +M+ PN T + AC+ L + H +L+++ + FVGTA
Sbjct: 34 VESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTAT 93
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
VDM+ KC ++ A ++F+++ +RD +NAM+
Sbjct: 94 VDMFVKCNSVDYAAKVFERMPERDATTWNAML 125
>AT2G41080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:17132857-17134554 FORWARD
LENGTH=565
Length = 565
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 18/239 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F +P+ + +N +I+ SL+ R + P+ +T S+F
Sbjct: 44 ARKVFDEMPDRKLTTWNAMIAGLIQFEFN-EEGLSLF-REMHGLGFSPDEYTLGSVFSGS 101
Query: 119 CGSGHWFQYGPPLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
G G +H + +K+ LE D V +SL + Y + G+L + + +L
Sbjct: 102 AGL-RSVSIGQQIHGYTIKYGLE--LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLV 158
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
WNTL+ LYL+ M++S RPN++T V ++S+CS+L
Sbjct: 159 AWNTLIMGNAQNGCPET------------VLYLYKMMKISGCRPNKITFVTVLSSCSDLA 206
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
QG H ++ V ++L+ MYSKCGCL A + F + D D +++MI
Sbjct: 207 IRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMI 265
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 151 LLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYL 210
L+N Y + G L +R +FD++ + L TWN ++ L + + E L L
Sbjct: 31 LINGYVRAGDLVNARKVFDEMPDRKLTTWNAMI------------AGLIQFEFNEEGLSL 78
Query: 211 FCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSK 270
F +M P+E TL ++ S + L ++S G H Y ++ L+L+ V ++L MY +
Sbjct: 79 FREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMR 138
Query: 271 CGCLNLACQLFDQLTDRDTFCYNAMI 296
G L + + R+ +N +I
Sbjct: 139 NGKLQDGEIVIRSMPVRNLVAWNTLI 164
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 31/267 (11%)
Query: 20 HSLNTLKQVHAQMLTTGLALH---TYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNT 76
S++ +Q+H + GL L L+H+ + KL + S+P + +NT
Sbjct: 105 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD--GEIVIRSMPVRNLVAWNT 162
Query: 77 LISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVL 136
LI + + LY +++ +PN TF ++ +C Q G +HA +
Sbjct: 163 LIMG-NAQNGCPETVLYLY-KMMKISGCRPNKITFVTVLSSCSDLAIRGQ-GQQIHAEAI 219
Query: 137 KFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXX 196
K + V +SL++ Y+K G L + F + + D W++++
Sbjct: 220 K-IGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGD--- 275
Query: 197 XLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQG-----VWTHCYLL 250
EA+ LF M + + NEV + L+ ACS+ G +G + Y
Sbjct: 276 ---------EAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGF 326
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLA 277
+ LK T +VD+ + GCL+ A
Sbjct: 327 KPGLKHY----TCVVDLLGRAGCLDQA 349
>AT3G22150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:7813028-7815490 FORWARD
LENGTH=820
Length = 820
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 20/274 (7%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSH 84
+Q H + L ++ L+ + S+ S + + +F S+ V +NT+IS+F +
Sbjct: 338 RQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQN 397
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+Y + + + + T +L A + + G HA +++ +
Sbjct: 398 GLDDEGLMLVYE--MQKQGFKIDYITVTALLSAASNLRNK-EIGKQTHAFLIR--QGIQF 452
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQ--ISEPDLATWNTLLXXXXXXXXXXXXXXLEDAD 202
+ + L++ Y+K G + +S+ LF+ +E D ATWN+++
Sbjct: 453 EGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGH----------- 501
Query: 203 LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
+ + +F M RPN VT+ +++ ACS +G++ G H + +R L N FV +
Sbjct: 502 -TEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVAS 560
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
ALVDMYSK G + A +F Q +R++ Y MI
Sbjct: 561 ALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMI 594
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 21/239 (8%)
Query: 62 IFSSIPNPTVFLYNTLISSF--TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC 119
+F ++ V +NTLIS + T +++ F + R+ ++P+ +F ++F A
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRM----EVKPSPVSFVNVFPAVS 225
Query: 120 GSGHWFQYGPPLHAHVLKFL-EPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
S + + +LK E D FV +S ++ YA+ G + SR +FD E ++
Sbjct: 226 IS-RSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEV 284
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLG 237
WNT++ D +E++ LF + S+ +EVT + SA S L
Sbjct: 285 WNTMIGVYVQN------------DCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQ 332
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ G H ++ +N +L + +L+ MYS+CG ++ + +F + +RD +N MI
Sbjct: 333 QVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMI 391
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 114/254 (44%), Gaps = 36/254 (14%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQP----NSFTFPSL 114
A +F +IP PT L+NT+I F ++ H A Y+R+ K P +++T+ S
Sbjct: 58 ARQLFDAIPKPTTVLWNTIIIGFICNNLP-HEALLFYSRM---KKTAPFTNCDAYTYSST 113
Query: 115 FKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYA---------KYGRLCVSR 165
KAC + + + G +H H+++ L+ V SL+N Y +Y V R
Sbjct: 114 LKACAETKN-LKAGKAVHCHLIRCLQNS-SRVVHNSLMNMYVSCLNAPDCFEYD---VVR 168
Query: 166 CLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVT 225
+FD + ++ WNTL+ + EA F M +P+ V+
Sbjct: 169 KVFDNMRRKNVVAWNTLISWYV------------KTGRNAEACRQFGIMMRMEVKPSPVS 216
Query: 226 LVALISACSNLGALSQGVWTHCYLLR--NNLKLNRFVGTALVDMYSKCGCLNLACQLFDQ 283
V + A S ++ + + +L+ + + FV ++ + MY++ G + + ++FD
Sbjct: 217 FVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDS 276
Query: 284 LTDRDTFCYNAMIG 297
+R+ +N MIG
Sbjct: 277 CVERNIEVWNTMIG 290
>AT3G61170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22638691-22641237 REVERSE
LENGTH=783
Length = 783
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 17/239 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F S P +N LIS + S++ AF+L+ + ++PN +T S+ + C
Sbjct: 78 AEKLFRSNPVKNTISWNALISGYCKSGSKVE-AFNLFWE-MQSDGIKPNEYTLGSVLRMC 135
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQI-SEPDLA 177
S G +H H +K D V LL YA+ R+ + LF+ + E +
Sbjct: 136 T-SLVLLLRGEQIHGHTIK-TGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNV 193
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
TW ++L + +A+ F D++ + N+ T ++++AC+++
Sbjct: 194 TWTSMLTGYSQN------------GFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVS 241
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
A GV HC ++++ K N +V +AL+DMY+KC + A L + + D +N+MI
Sbjct: 242 ACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMI 300
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 125/286 (43%), Gaps = 19/286 (6%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+L C S++ + QVH ++ +G + Y S L+ + +K A + +
Sbjct: 233 VLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDD 292
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +N++I I A S++ R + + ++ + FT PS+ S +
Sbjct: 293 VVSWNSMIVGCVRQG-LIGEALSMFGR-MHERDMKIDDFTIPSILNCFALSRTEMKIASS 350
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
H ++K Y V +L++ YAK G + + +F+ + E D+ +W L+
Sbjct: 351 AHCLIVKTGYATY-KLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNG 409
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
EAL LFC+M++ P+++ +++SA + L L G H +
Sbjct: 410 SYD------------EALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYI 457
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ + V +LV MY+KCG L A +F+ + RD + +I
Sbjct: 458 KSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLI 503
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 13/157 (8%)
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
P D F +++ Y+ RL + LF + +WN L+
Sbjct: 55 PERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGS--------- 105
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
+EA LF +MQ +PNE TL +++ C++L L +G H + ++ L+ V
Sbjct: 106 ---KVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNV 162
Query: 261 GTALVDMYSKCGCLNLACQLFDQLT-DRDTFCYNAMI 296
L+ MY++C ++ A LF+ + +++ + +M+
Sbjct: 163 VNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSML 199
>AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr3:18226954-18229600
REVERSE LENGTH=850
Length = 850
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 139/290 (47%), Gaps = 25/290 (8%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYAL----TIFSSIP 67
+ C L L KQ+H+ + +GL C L+ + +K ++ ++ +F +
Sbjct: 275 VFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRME 332
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
+ +V + LI+ + + + A +L++ ++ ++PN FTF S FKAC G+ +
Sbjct: 333 DHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC-GNLSDPRV 391
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G + K + V S+++ + K R+ ++ F+ +SE +L ++NT L
Sbjct: 392 GKQVLGQAFK-RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTC 450
Query: 188 XXXXXXXXXXLEDADLSLE-ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTH 246
+L+ E A L ++ + T +L+S +N+G++ +G H
Sbjct: 451 R-------------NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIH 497
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ L N+ V AL+ MYSKCG ++ A ++F+ + +R+ + +MI
Sbjct: 498 SQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 20/262 (7%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSH 84
KQV Q GLA ++ + ++++ K A F S+ + YNT + T
Sbjct: 393 KQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDG-TCR 451
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ AF L + I + L ++FTF SL G + G +H+ V+K L +
Sbjct: 452 NLNFEQAFKLLSEI-TERELGVSAFTFASLLSGVANVGS-IRKGEQIHSQVVK-LGLSCN 508
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
V +L++ Y+K G + + +F+ + ++ +W +++ +
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITG------------FAKHGFA 556
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG--T 262
+ L F M +PNEVT VA++SACS++G +S+G W H + + K+ +
Sbjct: 557 IRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG-WRHFNSMYEDHKIKPKMEHYA 615
Query: 263 ALVDMYSKCGCLNLACQLFDQL 284
+VD+ + G L A + + +
Sbjct: 616 CMVDLLCRAGLLTDAFEFINTM 637
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 132/294 (44%), Gaps = 27/294 (9%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSI---P 67
+LK + K VHA+++ + + + L+++ SK S A +F ++
Sbjct: 68 LLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFG 127
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
V ++ +++ + ++ ++ A ++ L L PN + + ++ +AC S +
Sbjct: 128 KRDVVSWSAMMACYGNNGRELD-AIKVFVEFL-ELGLVPNDYCYTAVIRACSNS-DFVGV 184
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRC--LFDQISEPDLATWNTLLXX 185
G ++K D V SL++ + K G +FD++SE ++ TW ++
Sbjct: 185 GRVTLGFLMKTGHFESDVCVGCSLIDMFVK-GENSFENAYKVFDKMSELNVVTWTLMITR 243
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
EA+ F DM +S ++ TL ++ SAC+ L LS G
Sbjct: 244 CMQM------------GFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291
Query: 246 HCYLLRNNLKLNRFVGTALVDMYSKC---GCLNLACQLFDQLTDRDTFCYNAMI 296
H + +R+ L + V +LVDMY+KC G ++ ++FD++ D + A+I
Sbjct: 292 HSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALI 343
>AT3G14730.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:4949385-4951346 REVERSE
LENGTH=653
Length = 653
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 124/287 (43%), Gaps = 32/287 (11%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPN-PTVFLYNTLI 78
L+ +K+VH G Y S L+T SK S A +F +P+ L+N L+
Sbjct: 175 ELSDVKKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALV 234
Query: 79 SSFTSHSSQIHLAFSLYNRILAHKTLQPNSF-----TFPSLFKACCGSGHWFQYGPPLHA 133
+ + SQI F + +L ++ T S+ A SG G +H
Sbjct: 235 NGY----SQI---FRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGD-IDNGRSIHG 286
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
+K D V +L++ Y K L + +F+ + E DL TWN++L
Sbjct: 287 LAVK-TGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCG--- 342
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL---- 249
D D +L LF M S RP+ VTL ++ C L +L QG H Y+
Sbjct: 343 ------DHDGTLA---LFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSG 393
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L N N F+ +L+DMY KCG L A +FD + +D+ +N MI
Sbjct: 394 LLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMI 440
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 24/287 (8%)
Query: 16 LQKCHSLN---TLKQVHAQMLTTG-LALHTYCLSHLLTISSKLASTYALTIFSSIPNPTV 71
LQ+C + +Q+H M+ G L + L+ + +K + V
Sbjct: 67 LQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGGSERDV 126
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
F YN LIS F + S + A Y + A+ L P+ +TFPSL K +
Sbjct: 127 FGYNALISGFVVNGSPLD-AMETYREMRANGIL-PDKYTFPSLLKGS----DAMELSDVK 180
Query: 132 HAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT-WNTLLXXXXXX 189
H L F L D +V + L+ Y+K+ + ++ +FD++ + D + WN L+
Sbjct: 181 KVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQI 240
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
EDA L +F M+ + T+ +++SA + G + G H
Sbjct: 241 FR------FEDA------LLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLA 288
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ + V AL+DMY K L A +F+ + +RD F +N+++
Sbjct: 289 VKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVL 335
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 27/218 (12%)
Query: 36 GLALHTYCLSHLLTISSKLASTY--------ALTIFSSIPNPTVFLYNTLISSFTSHSSQ 87
GLA+ T S ++ +S+ L Y A +IF ++ +F +N+++ +
Sbjct: 286 GLAVKTGSGSDIV-VSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLC-VHDYCGD 343
Query: 88 IHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK---FLEPPYD 144
+L+ R+L ++P+ T ++ C G + G +H +++ +
Sbjct: 344 HDGTLALFERMLC-SGIRPDIVTLTTVLPTC-GRLASLRQGREIHGYMIVSGLLNRKSSN 401
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
F+ SL++ Y K G L +R +FD + D A+WN ++ +L+
Sbjct: 402 EFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSC---------GELA 452
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
L+ C + +P+E+T V L+ ACS+ G L++G
Sbjct: 453 LDMFSCMCRAGV---KPDEITFVGLLQACSHSGFLNEG 487
>AT1G14470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4954080-4955702 FORWARD
LENGTH=540
Length = 540
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 138/326 (42%), Gaps = 63/326 (19%)
Query: 25 LKQVHAQMLT-TGLALHTYCLSHLLTISSKLA--STYALTIFSSIPNPTVFLYNTLISSF 81
L Q+HAQ++ L +Y S +++ ++L S Y IF S+ P VF+ N++ F
Sbjct: 22 LNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMFKYF 81
Query: 82 TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEP 141
S + LY + + + P++F+FP + K+ G FQ L F +
Sbjct: 82 -SKMDMANDVLRLYEQ-RSRCGIMPDAFSFPVVIKSAGRFGILFQ----ALVEKLGFFKD 135
Query: 142 PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATW---------------------- 179
PY V+ +++ Y K+ + +R +FDQIS+ + W
Sbjct: 136 PY---VRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDM 192
Query: 180 ---NTLLXXXXXXXXXXXXXXLEDA-------------------------DLSLEALYLF 211
N ++ LE+A + +AL LF
Sbjct: 193 MPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLF 252
Query: 212 CDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKC 271
DM RPNE T V +ISACS S + ++LN FV TAL+DM++KC
Sbjct: 253 NDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKC 312
Query: 272 GCLNLACQLFDQL-TDRDTFCYNAMI 296
+ A ++F++L T R+ +NAMI
Sbjct: 313 RDIQSARRIFNELGTQRNLVTWNAMI 338
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 123/264 (46%), Gaps = 37/264 (14%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A F +P +V +N ++S + + + A L+N +L ++PN T+ + AC
Sbjct: 217 ARKYFDRMPEKSVVSWNAMLSGY-AQNGFTEDALRLFNDML-RLGVRPNETTWVIVISAC 274
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDH---FVQASLLNFYAKYGRLCVSRCLFDQI-SEP 174
F+ P L ++K ++ FV+ +LL+ +AK + +R +F+++ ++
Sbjct: 275 S-----FRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQR 329
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLED----------------------ADLSLEALYLFC 212
+L TWN ++ L D A L++E F
Sbjct: 330 NLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIE---FFE 386
Query: 213 DM-QMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKC 271
DM +P+EVT+++++SAC ++ L G Y+ +N +KLN +L+ MY++
Sbjct: 387 DMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARG 446
Query: 272 GCLNLACQLFDQLTDRDTFCYNAM 295
G L A ++FD++ +RD YN +
Sbjct: 447 GNLWEAKRVFDEMKERDVVSYNTL 470
>AT4G14170.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:8176709-8178142 REVERSE
LENGTH=477
Length = 477
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 24/258 (9%)
Query: 48 LTISSKLASTYA---------LTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRI 98
+ +SSKL Y+ L++F +P +F +N +I F S S + L+ R+
Sbjct: 66 VVLSSKLVLAYSKLNHLFPTSLSVFWHMPYRNIFSWNIIIGEF-SRSGFASKSIDLFLRM 124
Query: 99 LAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKY 158
++P+ FT P + +AC S + G +H LK L FV ++L+ Y
Sbjct: 125 WRESCVRPDDFTLPLILRACSASRE-AKSGDLIHVLCLK-LGFSSSLFVSSALVIMYVDM 182
Query: 159 GRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSR 218
G+L +R LFD + D + + ++ L +F +M S
Sbjct: 183 GKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGE------------AMLGLAMFREMGYSG 230
Query: 219 RRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLAC 278
+ V +V+L+ AC LGAL G H + +R L +G A+ DMY KC L+ A
Sbjct: 231 FALDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAH 290
Query: 279 QLFDQLTDRDTFCYNAMI 296
+F ++ RD ++++I
Sbjct: 291 TVFVNMSRRDVISWSSLI 308
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 220 RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQ 279
RP++ TL ++ ACS G H L+ + FV +ALV MY G L A +
Sbjct: 131 RPDDFTLPLILRACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMYVDMGKLLHARK 190
Query: 280 LFDQLTDRDTFCYNAMIG 297
LFD + RD+ Y AM G
Sbjct: 191 LFDDMPVRDSVLYTAMFG 208
>AT3G49740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18447788-18450001 FORWARD
LENGTH=737
Length = 737
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 28/276 (10%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHS 85
QVH + TG +T + +T+ S A +F S+ + +NT+ISS+ + +
Sbjct: 309 QVHGLAIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEKDLVTWNTMISSY-NQA 367
Query: 86 SQIHLAFSLYNR--ILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF-LEPP 142
A S+Y R I+ ++P+ FTF SL + A ++KF L
Sbjct: 368 KLGKSAMSVYKRMHIIG---VKPDEFTFGSLLATSLD----LDVLEMVQACIIKFGLSSK 420
Query: 143 YDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDAD 202
+ + +L++ Y+K G++ + LF++ +L +WN ++
Sbjct: 421 IE--ISNALISAYSKNGQIEKADLLFERSLRKNLISWNAIISGFYHN------------G 466
Query: 203 LSLEALYLFCDMQMSRRR--PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
E L F + S R P+ TL L+S C + +L G TH Y+LR+ +
Sbjct: 467 FPFEGLERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLI 526
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G AL++MYS+CG + + ++F+Q++++D +N++I
Sbjct: 527 GNALINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLI 562
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 128/309 (41%), Gaps = 64/309 (20%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTI-FSSIPNPTVFLYNTLISSFTSHS 85
QVH + +GL H++ + LL++ +L + +L F I P V+ + TL+S+ +
Sbjct: 78 QVHCYAIRSGLLCHSHVSNTLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSA-SFKL 136
Query: 86 SQIHLAFSLYNRILA-------------------HKT------------LQPNSFTFPSL 114
I AF +++++ H+T ++ + F F ++
Sbjct: 137 GDIEYAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATI 196
Query: 115 FKACC-GSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYG---RLCVSRCL-FD 169
C GS +G +H+ V+K F+ +S++N ++ V CL F+
Sbjct: 197 LSMCDYGS---LDFGKQVHSLVIK-----AGFFIASSVVNALITMYFNCQVVVDACLVFE 248
Query: 170 Q--ISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLV 227
+ ++ D T+N ++ E+L +F M + RP ++T V
Sbjct: 249 ETDVAVRDQVTFNVVIDGLAGFKRD-------------ESLLVFRKMLEASLRPTDLTFV 295
Query: 228 ALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
+++ +CS + G H ++ + V A + MYS A ++F+ L ++
Sbjct: 296 SVMGSCS---CAAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEK 352
Query: 288 DTFCYNAMI 296
D +N MI
Sbjct: 353 DLVTWNTMI 361
>AT1G20230.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:7009570-7011852 FORWARD
LENGTH=760
Length = 760
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 44/302 (14%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTY--------ALTIFSSIPNPTVFLYNTLI 78
Q HA++L +G Y IS+KL ++Y A + SIP+PT++ +++LI
Sbjct: 36 QAHARILKSGAQNDGY-------ISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLI 88
Query: 79 SSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLH-AHVLK 137
+ T + + +++R+ +H L P+S P+LFK C F+ G +H +
Sbjct: 89 YALTK-AKLFTQSIGVFSRMFSH-GLIPDSHVLPNLFKVCA-ELSAFKVGKQIHCVSCVS 145
Query: 138 FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX----XXXXX 193
L+ D FVQ S+ + Y + GR+ +R +FD++S+ D+ T + LL
Sbjct: 146 GLD--MDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVR 203
Query: 194 XXXXLEDADLSL-------------------EALYLFCDMQMSRRRPNEVTLVALISACS 234
+E + + EA+ +F + P++VT+ +++ +
Sbjct: 204 ILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVG 263
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNA 294
+ L+ G H Y+++ L ++ V +A++DMY K G + LF+Q + NA
Sbjct: 264 DSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNA 323
Query: 295 MI 296
I
Sbjct: 324 YI 325
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 129/279 (46%), Gaps = 39/279 (13%)
Query: 43 CLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHK 102
CL ++ I S++ S S + +N ++S F + S A ++ +I H
Sbjct: 197 CLEEVVRILSEMES--------SGIEANIVSWNGILSGF-NRSGYHKEAVVMFQKI-HHL 246
Query: 103 TLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGR 160
P+ T S+ + G G +H +V+K L+ D V +++++ Y K G
Sbjct: 247 GFCPDQVTVSSVLPSV-GDSEMLNMGRLIHGYVIKQGLLK---DKCVISAMIDMYGKSGH 302
Query: 161 LCVSRCLFDQISEPDLA---------TWNTLLXXXXXXXXXXXXXXLEDADLS------- 204
+ LF+Q + + N L+ +E +S
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362
Query: 205 -------LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLN 257
+EAL LF +MQ++ +PN VT+ +++ AC N+ AL G TH + +R +L N
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN 422
Query: 258 RFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
VG+AL+DMY+KCG +NL+ +F+ + ++ C+N+++
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 122/273 (44%), Gaps = 29/273 (10%)
Query: 31 QMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFL----YNTLISSFTSHSS 86
+M+ G+ C +++ +S AL +F T+ L + ++I+ +
Sbjct: 314 EMMEAGV-----CNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGK 368
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHF 146
I A L+ R + ++PN T PS+ AC G+ +G H ++ H
Sbjct: 369 DIE-ALELF-REMQVAGVKPNHVTIPSMLPAC-GNIAALGHGRSTHGFAVRVHLLDNVH- 424
Query: 147 VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLE 206
V ++L++ YAK GR+ +S+ +F+ + +L WN+L+ + E
Sbjct: 425 VGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGK------------AKE 472
Query: 207 ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG--TAL 264
+ +F + +R +P+ ++ +L+SAC +G +G W + ++ + + + +
Sbjct: 473 VMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG-WKYFKMMSEEYGIKPRLEHYSCM 531
Query: 265 VDMYSKCGCLNLACQLFDQLT-DRDTFCYNAMI 296
V++ + G L A L ++ + D+ + A++
Sbjct: 532 VNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALL 564
>AT3G49710.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:18437845-18440010 FORWARD
LENGTH=721
Length = 721
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 132/284 (46%), Gaps = 21/284 (7%)
Query: 19 CHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPN-PTVFLYNT 76
C ++ +KQ+H ++ G ++ + +T SK A+++F + +N+
Sbjct: 151 CDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNS 210
Query: 77 LISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVL 136
+I ++ H A +LY ++ K + + FT S+ A H G H ++
Sbjct: 211 MIVAYGQHKEGAK-ALALYKEMI-FKGFKIDMFTLASVLNALTSLDHLIG-GRQFHGKLI 267
Query: 137 KFLEPPYDHFVQASLLNFYAKYGR---LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
K H V + L++FY+K G + S +F +I PDL WNT++
Sbjct: 268 KAGFHQNSH-VGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSM----- 321
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNN 253
+ +LS EA+ F MQ RP++ + V + SACSNL + SQ H ++++
Sbjct: 322 ------NEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSH 375
Query: 254 LKLNRF-VGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ NR V AL+ +Y K G L A +FD++ + + +N MI
Sbjct: 376 IPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMI 419
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 132/312 (42%), Gaps = 52/312 (16%)
Query: 20 HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLI 78
L T K +HA + + +A TY +H + + SK +YA F S P VF YN ++
Sbjct: 22 RDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIV 81
Query: 79 SSFTSHSSQIHLAFSLYNRI-----LAHKTL-------------------------QPNS 108
++ + S+IH+A L++ I +++ TL + +
Sbjct: 82 KAY-AKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDG 140
Query: 109 FTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLF 168
FT L ACC + LH + Y V + + +Y+K G L + +F
Sbjct: 141 FTLSGLIAACCDRVDLIK---QLHCFSVSGGFDSYSS-VNNAFVTYYSKGGLLREAVSVF 196
Query: 169 DQISE-PDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLV 227
+ E D +WN+++ +AL L+ +M + + TL
Sbjct: 197 YGMDELRDEVSWNSMIVAYGQHKE------------GAKALALYKEMIFKGFKIDMFTLA 244
Query: 228 ALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKC-GCLNL--ACQLFDQL 284
++++A ++L L G H L++ N VG+ L+D YSKC GC + + ++F ++
Sbjct: 245 SVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEI 304
Query: 285 TDRDTFCYNAMI 296
D +N MI
Sbjct: 305 LSPDLVVWNTMI 316
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 118/268 (44%), Gaps = 27/268 (10%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYAL----TIFSSIPNPTVFLYNTLISSF 81
+Q H +++ G +++ S L+ SK + +F I +P + ++NT+IS +
Sbjct: 260 RQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGY 319
Query: 82 TSH---SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF 138
+ + S + +F RI H+ P+ +F + AC Q +H +K
Sbjct: 320 SMNEELSEEAVKSFRQMQRI-GHR---PDDCSFVCVTSACSNLSSPSQC-KQIHGLAIKS 374
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
P V +L++ Y K G L +R +FD++ E + ++N ++
Sbjct: 375 HIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGH------- 427
Query: 199 EDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNR 258
EAL L+ M S PN++T VA++SAC++ G + +G + ++ K+
Sbjct: 428 -----GTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQ-EYFNTMKETFKIEP 481
Query: 259 FVG--TALVDMYSKCGCLNLACQLFDQL 284
+ ++D+ + G L A + D +
Sbjct: 482 EAEHYSCMIDLLGRAGKLEEAERFIDAM 509
>AT4G14050.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:8103645-8105483 REVERSE
LENGTH=612
Length = 612
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 30/308 (9%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKL-ASTYALTIFSSIPNPTV 71
L+L + +L T K +HA ++ G+ + L+ + K A+++AL +F +P+
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 72 FLYNTLISSFTSHSSQIHLA---FSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
+ +++++ +Q +L+ S+++ + + L+P+ F F +L KAC G +G
Sbjct: 70 IAWASVLTAL----NQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGS-IDHG 124
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H H + E D V++SL++ YAK G L ++ +FD I + +W ++
Sbjct: 125 RQVHCHFI-VSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 183
Query: 189 XXXXXXXXXL-------------------EDADLSLEALYLFCDMQMSRRRP-NEVTLVA 228
L + LEA +F +M+ R + + L +
Sbjct: 184 SGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 243
Query: 229 LISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRD 288
++ AC+NL A G H ++ F+ AL+DMY+KC + A +F ++ RD
Sbjct: 244 IVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRD 303
Query: 289 TFCYNAMI 296
+ ++I
Sbjct: 304 VVSWTSLI 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 31/286 (10%)
Query: 3 AQNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTI 62
A + + ++ + KC LN+ K V + T +S K AL +
Sbjct: 137 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRK---EEALEL 193
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
F +P ++ + LIS F + AFS++ + + + S+ AC
Sbjct: 194 FRILPVKNLYSWTALISGFVQSGKGLE-AFSVFTEMRRERVDILDPLVLSSIVGACANLA 252
Query: 123 HWFQYGPPLHAHVLKFLEPPYDH--FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWN 180
G +H V+ +D F+ +L++ YAK + ++ +F ++ D+ +W
Sbjct: 253 ASIA-GRQVHGLVIAL---GFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWT 308
Query: 181 TLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS 240
+L+ + + +AL L+ DM +PNEVT V LI ACS++G +
Sbjct: 309 SLIVG------------MAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVE 356
Query: 241 QG-----VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLF 281
+G T Y +R +L+ T L+D+ + G L+ A L
Sbjct: 357 KGRELFQSMTKDYGIRPSLQHY----TCLLDLLGRSGLLDEAENLI 398
>AT3G02010.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:337965-340442 FORWARD
LENGTH=825
Length = 825
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 17/286 (5%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTI-FSSIPNPT 70
+LK + H +Q+HA +TTG + + +L SK + F +P
Sbjct: 256 VLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELD 315
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
YN +ISS+ S + Q + + R + +F F ++ + + Q G
Sbjct: 316 FVSYNVVISSY-SQADQYEASLHFF-REMQCMGFDRRNFPFATML-SIAANLSSLQMGRQ 372
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH L H V SL++ YAK + +F + + +W L+
Sbjct: 373 LHCQALLATADSILH-VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQ-- 429
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
L L LF M+ S R ++ T ++ A ++ +L G H +++
Sbjct: 430 ----------KGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFII 479
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
R+ N F G+ LVDMY+KCG + A Q+F+++ DR+ +NA+I
Sbjct: 480 RSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALI 525
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 18/241 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQ-PNSFTFPSLFKA 117
A +F ++P+ TV + T++ + + +S AF L+ ++ + P+ TF +L
Sbjct: 98 ARDLFDAMPDRTVVTW-TILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPG 156
Query: 118 CCGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD 175
C + G +HA +K F P+ V LL Y + RL ++ LF++I E D
Sbjct: 157 CNDAVPQNAVGQ-VHAFAVKLGFDTNPF-LTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
T+NTL+ E L E+++LF M+ S +P++ T ++ A
Sbjct: 215 SVTFNTLI------------TGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVG 262
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
L + G H + + VG ++D YSK + LFD++ + D YN +
Sbjct: 263 LHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVV 322
Query: 296 I 296
I
Sbjct: 323 I 323
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 40/248 (16%)
Query: 9 NHPILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYAL----- 60
N P +L +L++L +Q+H Q L +L + + L YA
Sbjct: 351 NFPFATMLSIAANLSSLQMGRQLHCQALLA-------TADSILHVGNSLVDMYAKCEMFE 403
Query: 61 ---TIFSSIPNPTVFLYNTLISSFTSHSSQIHLA-FSLYNRILAHKTLQPNSFTFPSLFK 116
IF S+P T + LIS + +H A L+ ++ L+ + TF ++ K
Sbjct: 404 EAELIFKSLPQRTTVSWTALISGYVQKG--LHGAGLKLFTKMRG-SNLRADQSTFATVLK 460
Query: 117 ACCGSGHWFQYGPPLHAHVLKF--LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
A G LHA +++ LE + F + L++ YAK G + + +F+++ +
Sbjct: 461 ASASFASLL-LGKQLHAFIIRSGNLE---NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR 516
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
+ +WN L+ D A+ F M S +P+ V+++ +++ACS
Sbjct: 517 NAVSWNALISAHA------------DNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Query: 235 NLGALSQG 242
+ G + QG
Sbjct: 565 HCGFVEQG 572
>AT2G27610.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:11783927-11786533 REVERSE
LENGTH=868
Length = 868
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 120/262 (45%), Gaps = 21/262 (8%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSHS 85
+VHAQ++ T + + LL KL A +FS I + + ++ +++ + + +
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGY-AQT 472
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
+ A ++ L ++PN FTF S+ C + G H +K D
Sbjct: 473 GETEAAIKMFGE-LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK---SRLDS 528
Query: 146 F--VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
V ++LL YAK G + + +F + E DL +WN+++
Sbjct: 529 SLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQ------------ 576
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN-NLKLNRFVGT 262
+++AL +F +M+ + + + VT + + +AC++ G + +G ++R+ + + +
Sbjct: 577 AMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNS 636
Query: 263 ALVDMYSKCGCLNLACQLFDQL 284
+VD+YS+ G L A ++ + +
Sbjct: 637 CMVDLYSRAGQLEKAMKVIENM 658
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 115/263 (43%), Gaps = 32/263 (12%)
Query: 36 GLALHTYCLS----HLLTISSKLASTY--------ALTIFSSIPNPTVFLYNTLISSFTS 83
G LH C+ +++ + L TY +F + V + TLIS +
Sbjct: 112 GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
+S + +L+ R+ T QPNSFTF + G G L H + ++
Sbjct: 172 NSMNDEV-LTLFMRMQNEGT-QPNSFTFAAALGVLAEEGVG---GRGLQVHTV-VVKNGL 225
Query: 144 DHF--VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
D V SL+N Y K G + +R LFD+ + TWN+++
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN------------ 273
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
L LEAL +F M+++ R +E + ++I C+NL L HC +++ ++ +
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333
Query: 262 TALVDMYSKCGCLNLACQLFDQL 284
TAL+ YSKC + A +LF ++
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEI 356
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 23/288 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSK-LASTYALTIFSSIP-NP 69
++KL L +Q+H ++ G + L+ SK A AL +F I
Sbjct: 301 VIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVG 360
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
V + +IS F + + A L++ + K ++PN FT+ + A
Sbjct: 361 NVVSWTAMISGFLQNDGK-EEAVDLFSE-MKRKGVRPNEFTYSVILTALP-----VISPS 413
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+HA V+K V +LL+ Y K G++ + +F I + D+ W+ +L
Sbjct: 414 EVHAQVVK-TNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA-LSQGVWTHCY 248
A+ +F ++ +PNE T ++++ C+ A + QG H +
Sbjct: 473 GETEA------------AIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGF 520
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ L + V +AL+ MY+K G + A ++F + ++D +N+MI
Sbjct: 521 AIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 568
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 127 YGPPLHAHVLKF--LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLX 184
+G LH +KF L+ D V SL++ Y K R +FD++ E ++ TW TL+
Sbjct: 111 FGRQLHCQCIKFGFLD---DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLIS 167
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
++ E L LF MQ +PN T A + + G +G+
Sbjct: 168 GYARNS------------MNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H +++N L V +L+++Y KCG + A LFD+ + +N+MI
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 121/274 (44%), Gaps = 26/274 (9%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSHS 85
QVH ++ GL + L+ + K + A +F +V +N++IS + ++
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK--FLEPPY 143
+ Y+ L + L +SF S+ K C ++ LH V+K FL +
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFA--SVIKLCANLKE-LRFTEQLHCSVVKYGFL---F 328
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQIS-EPDLATWNTLLXXXXXXXXXXXXXXLEDAD 202
D ++ +L+ Y+K + + LF +I ++ +W ++ D
Sbjct: 329 DQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQN------------D 376
Query: 203 LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
EA+ LF +M+ RPNE T +++A + H +++ N + + VGT
Sbjct: 377 GKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGT 432
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
AL+D Y K G + A ++F + D+D ++AM+
Sbjct: 433 ALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAML 466
>AT4G31070.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:15118696-15120537 REVERSE
LENGTH=613
Length = 613
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 19/203 (9%)
Query: 97 RILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL--HAHVLKFLEPPY-DHFVQASLLN 153
R + + L+PN T S+ AC YG L H F + D + A+ +
Sbjct: 240 RAMQRENLRPNRVTLLSVLPACV----ELNYGSSLVKEIHGFSFRHGCHADERLTAAFMT 295
Query: 154 FYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCD 213
Y + G + +SR LF+ D+ W++++ E D S E + L
Sbjct: 296 MYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYA-----------ETGDCS-EVMNLLNQ 343
Query: 214 MQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGC 273
M+ N VTL+A++SAC+N LS H +L+ + +G AL+DMY+KCG
Sbjct: 344 MRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGS 403
Query: 274 LNLACQLFDQLTDRDTFCYNAMI 296
L+ A ++F +LT++D +++MI
Sbjct: 404 LSAAREVFYELTEKDLVSWSSMI 426
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 16/272 (5%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTYAL-TIFSSIPNPTVFLYNTLISSFTSHS 85
Q+H L G T + L+++ +K + YA+ +F + + Y ++I+S
Sbjct: 68 QLHCLCLKAGADCDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINS-CCQD 126
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
++ A L + + + P S SL C G + HA VL
Sbjct: 127 GLLYEAMKLIKEMYFYGFI-PKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESV 185
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
+ +L++ Y K+ + +FDQ+ + +W ++ ++ ++ +
Sbjct: 186 LLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGCVAN---------QNYEMGV 236
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV-WTHCYLLRNNLKLNRFVGTAL 264
+ LF MQ RPN VTL++++ AC L S V H + R+ + + A
Sbjct: 237 D---LFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTAAF 293
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ MY +CG ++L+ LF+ RD +++MI
Sbjct: 294 MTMYCRCGNVSLSRVLFETSKVRDVVMWSSMI 325
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 17/198 (8%)
Query: 103 TLQPNSFT--FPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGR 160
+L N FT PS+ KAC F G LH LK D V SL++ YAK+ R
Sbjct: 39 SLGTNGFTAILPSVIKACAFQQEPFLLGAQLHCLCLK-AGADCDTVVSNSLISMYAKFSR 97
Query: 161 LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRR 220
R +FD++ D ++ +++ +D L EA+ L +M
Sbjct: 98 KYAVRKVFDEMLHRDTVSYCSII-----------NSCCQDG-LLYEAMKLIKEMYFYGFI 145
Query: 221 PNEVTLVALISACSNLGALSQ--GVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLAC 278
P + +L++ C+ +G+ S+ ++ L+ ++ + + TALVDMY K A
Sbjct: 146 PKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVLLSTALVDMYLKFDDHAAAF 205
Query: 279 QLFDQLTDRDTFCYNAMI 296
+FDQ+ ++ + AMI
Sbjct: 206 HVFDQMEVKNEVSWTAMI 223
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 102/230 (44%), Gaps = 28/230 (12%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLY 74
L+++ H + HA T + YC +++S +F + V ++
Sbjct: 270 LVKEIHGFSFRHGCHADERLTAAFMTMYCRCGNVSLSR--------VLFETSKVRDVVMW 321
Query: 75 NTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAH 134
+++IS + + + +L N+ + + ++ NS T ++ AC S + +H+
Sbjct: 322 SSMISGY-AETGDCSEVMNLLNQ-MRKEGIEANSVTLLAIVSACTNST-LLSFASTVHSQ 378
Query: 135 VLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXX 192
+LK F+ + +L++ YAK G L +R +F +++E DL +W++++
Sbjct: 379 ILKCGFMSHI---LLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHG 435
Query: 193 XXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
EAL +F M +++ +A++SAC++ G + +
Sbjct: 436 S------------EALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEA 473
>AT5G46460.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:18840305-18842398 FORWARD
LENGTH=697
Length = 697
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 16/238 (6%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
AL +F +P V + T+I + A L+ +L ++ S F + AC
Sbjct: 178 ALKLFKQMPGKNVISWTTMICGLDQNERSGE-ALDLFKNML-RCCIKSTSRPFTCVITAC 235
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
+ F G +H ++K L Y+ +V ASL+ FYA R+ SR +FD+ +A
Sbjct: 236 ANAPA-FHMGIQVHGLIIK-LGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAV 293
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
W LL EDA L +F M + PN+ T + +++CS LG
Sbjct: 294 WTALLSGYSLNKKH------EDA------LSIFSGMLRNSILPNQSTFASGLNSCSALGT 341
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L G H ++ L+ + FVG +LV MYS G +N A +F ++ + +N++I
Sbjct: 342 LDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSII 399
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 19/262 (7%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSHS 85
QVH ++ G Y + L+T + + +F + V ++ L+S ++ +
Sbjct: 246 QVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNK 305
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
A S+++ +L + L PN TF S +C G +G +H +K L D
Sbjct: 306 KH-EDALSIFSGMLRNSIL-PNQSTFASGLNSCSALGT-LDWGKEMHGVAVK-LGLETDA 361
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
FV SL+ Y+ G + + +F +I + + +WN+++
Sbjct: 362 FVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKW----------- 410
Query: 206 EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG--TA 263
A +F M + P+E+T L+SACS+ G L +G Y+ ++R + T
Sbjct: 411 -AFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTC 469
Query: 264 LVDMYSKCGCLNLACQLFDQLT 285
+VD+ +CG L A +L +++
Sbjct: 470 MVDILGRCGKLKEAEELIERMV 491
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 108/263 (41%), Gaps = 43/263 (16%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F+ +P+P V LY +I+ +T S+++ A +L++ + + N S+ C
Sbjct: 54 AREVFNQVPSPHVSLYTKMITGYT-RSNRLVDALNLFDEMPVRDVVSWN-----SMISGC 107
Query: 119 CGSGH------------------W-------FQYGPPLHAHVLKFLEPPYDHFVQASLLN 153
G W F+ G A L + P D S+++
Sbjct: 108 VECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVH 167
Query: 154 FYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCD 213
Y ++G++ + LF Q+ ++ +W T++ L+ + S EAL LF +
Sbjct: 168 GYLQFGKVDDALKLFKQMPGKNVISWTTMI------------CGLDQNERSGEALDLFKN 215
Query: 214 MQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGC 273
M + +I+AC+N A G+ H +++ +V +L+ Y+ C
Sbjct: 216 MLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKR 275
Query: 274 LNLACQLFDQLTDRDTFCYNAMI 296
+ + ++FD+ + A++
Sbjct: 276 IGDSRKVFDEKVHEQVAVWTALL 298
>AT1G56570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21195804-21197721 FORWARD
LENGTH=611
Length = 611
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 24/279 (8%)
Query: 15 LLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLASTY--ALTIFSSIPNP 69
+L+ C ++ L VH ++ G+ Y + ++ + + + T A IF I
Sbjct: 117 VLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVK 176
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRIL-AHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
+ TLI+ FT I +Y ++L + + P T A S G
Sbjct: 177 NDVTWTTLITGFTHLGDGIG-GLKMYKQMLLENAEVTPYCITIAVRASASIDS---VTTG 232
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+HA V+K + V S+L+ Y + G L ++ F ++ + DL TWNTL+
Sbjct: 233 KQIHASVIK-RGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISE--- 288
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
LE +D S EAL +F + PN T +L++AC+N+ AL+ G H
Sbjct: 289 ---------LERSDSS-EALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGR 338
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
+ R N + AL+DMY+KCG + + ++F ++ DR
Sbjct: 339 IFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDR 377
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 131/285 (45%), Gaps = 29/285 (10%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLIS 79
S+ T KQ+HA ++ G + ++ +L + + + A F + + + +NTLIS
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLIS 287
Query: 80 SFT-SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF 138
S SS+ L F + + PN +TF SL AC G LH + +
Sbjct: 288 ELERSDSSEALLMFQRFE----SQGFVPNCYTFTSLVAACANIAA-LNCGQQLHGRIFR- 341
Query: 139 LEPPYDHFVQ--ASLLNFYAKYGRLCVSRCLFDQISEP-DLATWNTLLXXXXXXXXXXXX 195
++ V+ +L++ YAK G + S+ +F +I + +L +W +++
Sbjct: 342 --RGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSH------ 393
Query: 196 XXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLK 255
EA+ LF M S RP+ + +A++SAC + G + +G+ + ++ +
Sbjct: 394 ------GYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGL-KYFNVMESEYG 446
Query: 256 LN--RFVGTALVDMYSKCGCLNLACQLFDQLTDR-DTFCYNAMIG 297
+N R + +VD+ + G + A +L +++ + D + A++G
Sbjct: 447 INPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILG 491
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 17/239 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A ++F +P+ V + +I+ + S + A+ ++ ++ T PN FT S+ K+C
Sbjct: 64 ARSLFDEMPDRDVVAWTAMITGYASSNYNAR-AWECFHEMVKQGT-SPNEFTLSSVLKSC 121
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCL-FDQISEPDLA 177
YG +H V+K L +V +++N YA + CL F I +
Sbjct: 122 RNM-KVLAYGALVHGVVVK-LGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDV 179
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
TW TL+ L D + L ++ M + + + A +++
Sbjct: 180 TWTTLITGFTH---------LGDG---IGGLKMYKQMLLENAEVTPYCITIAVRASASID 227
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ G H +++ + N V +++D+Y +CG L+ A F ++ D+D +N +I
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLI 286
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 141 PPYD----HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXX 196
PPY H + +L+ Y + G + +R LFD++ + D+ W ++
Sbjct: 37 PPYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYA--------- 87
Query: 197 XLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKL 256
++ + A F +M PNE TL +++ +C N+ L+ G H +++ ++
Sbjct: 88 ---SSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEG 144
Query: 257 NRFVGTALVDMYSKCGC-LNLACQLFDQLTDRDTFCYNAMI 296
+ +V A+++MY+ C + AC +F + ++ + +I
Sbjct: 145 SLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLI 185
>AT2G17210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:7485398-7487602 REVERSE
LENGTH=715
Length = 715
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 26/290 (8%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTY--CLSHLLTISSKLASTYALTIFSSIPNP 69
+LK ++ + VH + G L C S + S A +F
Sbjct: 232 VLKACTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCR 291
Query: 70 TVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGP 129
+ +N++++ F H+ + A +++ ++ + ++ + T SL + C +F+
Sbjct: 292 NIVSWNSILAGFV-HNQRYDEALEMFH-LMVQEAVEVDEVTVVSLLRVC----KFFEQPL 345
Query: 130 PLHAHVLKFLEPPYD--HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
P + + Y+ +SL++ Y + + + D ++ D+ + +T++
Sbjct: 346 PCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISG-- 403
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
L A S EA+ +FC M R PN +T+++L++ACS L W H
Sbjct: 404 ----------LAHAGRSDEAISIFCHM---RDTPNAITVISLLNACSVSADLRTSKWAHG 450
Query: 248 YLLRNNLKLNRF-VGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+R +L +N VGT++VD Y+KCG + +A + FDQ+T+++ + +I
Sbjct: 451 IAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVII 500
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 19/260 (7%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVFLYNTLISSFTSH 84
K +H ++ G + LS L+ + + A T+ S+ V +T+IS +H
Sbjct: 348 KSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGL-AH 406
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ + A S++ H PN+ T SL AC S + H ++ D
Sbjct: 407 AGRSDEAISIF----CHMRDTPNAITVISLLNACSVSAD-LRTSKWAHGIAIRRSLAIND 461
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
V S+++ YAK G + ++R FDQI+E ++ +W ++ L
Sbjct: 462 ISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAING------------LP 509
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
+AL LF +M+ PN VT +A +SAC++ G + +G+ ++ + K + + +
Sbjct: 510 DKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCI 569
Query: 265 VDMYSKCGCLNLACQLFDQL 284
VDM S+ G ++ A +L L
Sbjct: 570 VDMLSRAGEIDTAVELIKNL 589
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 36/215 (16%)
Query: 82 TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEP 141
S S + S Y+ I + F FP +FKAC FQ
Sbjct: 19 ASVSGKWREVVSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGN------------- 65
Query: 142 PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
S+ +FY K G LC FD ++ D +WN ++ L D
Sbjct: 66 --------SIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIV------------FGLLDY 105
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
E L+ F +++ PN TLV +I AC +L G H Y++R+ V
Sbjct: 106 GFEEEGLWWFSKLRVWGFEPNTSTLVLVIHACRSL--WFDGEKIHGYVIRSGFCGISSVQ 163
Query: 262 TALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ MY+ L+ A +LFD++++RD ++ +I
Sbjct: 164 NSILCMYADSDSLS-ARKLFDEMSERDVISWSVVI 197
>AT1G16480.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:5625742-5628605 REVERSE
LENGTH=928
Length = 928
Score = 85.1 bits (209), Expect = 5e-17, Method: Composition-based stats.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 23/246 (9%)
Query: 56 STYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
S A +F +P + +N+L++SF + + L + I + K++ N TF S
Sbjct: 295 SVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV--NYVTFTSAL 352
Query: 116 KACCGSGHWFQYGPPLHAHVLK---FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS 172
AC + +F+ G LH V+ F Y+ + +L++ Y K G + SR + Q+
Sbjct: 353 AACF-TPDFFEKGRILHGLVVVSGLF----YNQIIGNALVSMYGKIGEMSESRRVLLQMP 407
Query: 173 EPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISA 232
D+ WN L+ ED D +L A F M++ N +T+V+++SA
Sbjct: 408 RRDVVAWNALIGGYAED---------EDPDKALAA---FQTMRVEGVSSNYITVVSVLSA 455
Query: 233 CSNLG-ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
C G L +G H Y++ + + V +L+ MY+KCG L+ + LF+ L +R+
Sbjct: 456 CLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIIT 515
Query: 292 YNAMIG 297
+NAM+
Sbjct: 516 WNAMLA 521
Score = 82.8 bits (203), Expect = 2e-16, Method: Composition-based stats.
Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 25/277 (9%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFLYNTLISSFTS- 83
+Q+ Q++ +GL + L+++ + + YA IF + +N++ +++
Sbjct: 163 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 222
Query: 84 -HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPP 142
H + FSL R H + NS T +L H ++G +H V+K
Sbjct: 223 GHIEESFRIFSLMRRF--HDEV--NSTTVSTLLSVLGHVDHQ-KWGRGIHGLVVKM---G 274
Query: 143 YDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
+D V +LL YA GR + +F Q+ DL +WN+L+ +
Sbjct: 275 FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFV------------N 322
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
SL+AL L C M S + N VT + ++AC +G H ++ + L N+ +
Sbjct: 323 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 382
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
G ALV MY K G ++ + ++ Q+ RD +NA+IG
Sbjct: 383 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 419
Score = 71.2 bits (173), Expect = 7e-13, Method: Composition-based stats.
Identities = 55/224 (24%), Positives = 106/224 (47%), Gaps = 19/224 (8%)
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+NT++S ++L + R + ++P+SF SL AC SG F+ G +H
Sbjct: 9 WNTMMSGIVRVG--LYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHG 66
Query: 134 HVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
V K L D +V ++L+ Y YG + SR +F+++ + ++ +W +L+
Sbjct: 67 FVAKSGLLS---DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGY----- 118
Query: 192 XXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLR 251
D E + ++ M+ NE ++ +IS+C L S G +++
Sbjct: 119 -------SDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVK 171
Query: 252 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
+ L+ V +L+ M G ++ A +FDQ+++RDT +N++
Sbjct: 172 SGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSI 215
Score = 68.2 bits (165), Expect = 6e-12, Method: Composition-based stats.
Identities = 60/270 (22%), Positives = 115/270 (42%), Gaps = 16/270 (5%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHSS 86
+H ++ +GL + + L+++ K+ + + + +P V +N LI + +
Sbjct: 367 LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY-AEDE 425
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHF 146
A + + + + + + N T S+ AC G + G PLHA+++ +H
Sbjct: 426 DPDKALAAF-QTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEH- 483
Query: 147 VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLE 206
V+ SL+ YAK G L S+ LF+ + ++ TWN +L E
Sbjct: 484 VKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGE------------E 531
Query: 207 ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
L L M+ ++ + +SA + L L +G H ++ + + F+ A D
Sbjct: 532 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 591
Query: 267 MYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
MYSKCG + ++ +R +N +I
Sbjct: 592 MYSKCGEIGEVVKMLPPSVNRSLPSWNILI 621
>AT1G16480.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:5625843-5628656 REVERSE
LENGTH=937
Length = 937
Score = 85.1 bits (209), Expect = 5e-17, Method: Composition-based stats.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 23/246 (9%)
Query: 56 STYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
S A +F +P + +N+L++SF + + L + I + K++ N TF S
Sbjct: 312 SVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV--NYVTFTSAL 369
Query: 116 KACCGSGHWFQYGPPLHAHVLK---FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS 172
AC + +F+ G LH V+ F Y+ + +L++ Y K G + SR + Q+
Sbjct: 370 AACF-TPDFFEKGRILHGLVVVSGLF----YNQIIGNALVSMYGKIGEMSESRRVLLQMP 424
Query: 173 EPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISA 232
D+ WN L+ ED D +L A F M++ N +T+V+++SA
Sbjct: 425 RRDVVAWNALIGGYAED---------EDPDKALAA---FQTMRVEGVSSNYITVVSVLSA 472
Query: 233 CSNLG-ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
C G L +G H Y++ + + V +L+ MY+KCG L+ + LF+ L +R+
Sbjct: 473 CLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIIT 532
Query: 292 YNAMIG 297
+NAM+
Sbjct: 533 WNAMLA 538
Score = 82.8 bits (203), Expect = 2e-16, Method: Composition-based stats.
Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 25/277 (9%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTVFLYNTLISSFTS- 83
+Q+ Q++ +GL + L+++ + + YA IF + +N++ +++
Sbjct: 180 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 239
Query: 84 -HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPP 142
H + FSL R H + NS T +L H ++G +H V+K
Sbjct: 240 GHIEESFRIFSLMRRF--HDEV--NSTTVSTLLSVLGHVDHQ-KWGRGIHGLVVKM---G 291
Query: 143 YDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
+D V +LL YA GR + +F Q+ DL +WN+L+ +
Sbjct: 292 FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFV------------N 339
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
SL+AL L C M S + N VT + ++AC +G H ++ + L N+ +
Sbjct: 340 DGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 399
Query: 261 GTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
G ALV MY K G ++ + ++ Q+ RD +NA+IG
Sbjct: 400 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 436
Score = 72.4 bits (176), Expect = 3e-13, Method: Composition-based stats.
Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 19/239 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F +P +NT++S ++L + R + ++P+SF SL AC
Sbjct: 11 ARHLFDIMPVRNEVSWNTMMSGIVRVG--LYLEGMEFFRKMCDLGIKPSSFVIASLVTAC 68
Query: 119 CGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
SG F+ G +H V K L D +V ++L+ Y YG + SR +F+++ + ++
Sbjct: 69 GRSGSMFREGVQVHGFVAKSGLLS---DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNV 125
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
+W +L+ D E + ++ M+ NE ++ +IS+C L
Sbjct: 126 VSWTSLMVGY------------SDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLL 173
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
S G ++++ L+ V +L+ M G ++ A +FDQ+++RDT +N++
Sbjct: 174 KDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSI 232
Score = 68.2 bits (165), Expect = 6e-12, Method: Composition-based stats.
Identities = 60/270 (22%), Positives = 115/270 (42%), Gaps = 16/270 (5%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHSS 86
+H ++ +GL + + L+++ K+ + + + +P V +N LI + +
Sbjct: 384 LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY-AEDE 442
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHF 146
A + + + + + + N T S+ AC G + G PLHA+++ +H
Sbjct: 443 DPDKALAAF-QTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEH- 500
Query: 147 VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLE 206
V+ SL+ YAK G L S+ LF+ + ++ TWN +L E
Sbjct: 501 VKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGE------------E 548
Query: 207 ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
L L M+ ++ + +SA + L L +G H ++ + + F+ A D
Sbjct: 549 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 608
Query: 267 MYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
MYSKCG + ++ +R +N +I
Sbjct: 609 MYSKCGEIGEVVKMLPPSVNRSLPSWNILI 638
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 77/146 (52%), Gaps = 19/146 (13%)
Query: 155 YAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLF--- 211
Y K+GR+ +R LFD + + +WNT++ + L LE + F
Sbjct: 2 YTKFGRVKPARHLFDIMPVRNEVSWNTMMSG------------IVRVGLYLEGMEFFRKM 49
Query: 212 CDMQMSRRRPNEVTLVALISACSNLGAL-SQGVWTHCYLLRNNLKLNRFVGTALVDMYSK 270
CD+ + +P+ + +L++AC G++ +GV H ++ ++ L + +V TA++ +Y
Sbjct: 50 CDLGI---KPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGV 106
Query: 271 CGCLNLACQLFDQLTDRDTFCYNAMI 296
G ++ + ++F+++ DR+ + +++
Sbjct: 107 YGLVSCSRKVFEEMPDRNVVSWTSLM 132
>AT1G68930.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:25918314-25920545 FORWARD LENGTH=743
Length = 743
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 138/316 (43%), Gaps = 47/316 (14%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+LKL ++ KQ+H Q++ G + S LL + + + + A +F + +
Sbjct: 145 MLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRN 204
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYN-----------------------------RILAH 101
+YN+L+ + I A L+ R +
Sbjct: 205 TVMYNSLMGGLLA-CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKV 263
Query: 102 KTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH-FVQASLLNFYAKYGR 160
+ L+ + + F S+ AC G G G +HA +++ DH +V ++L++ Y K
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGA-INEGKQIHACIIR--TNFQDHIYVGSALIDMYCKCKC 320
Query: 161 LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRR 220
L ++ +FD++ + ++ +W ++ + EA+ +F DMQ S
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYG------------QTGRAEEAVKIFLDMQRSGID 368
Query: 221 PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
P+ TL ISAC+N+ +L +G H + + L V +LV +Y KCG ++ + +L
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRL 428
Query: 281 FDQLTDRDTFCYNAMI 296
F+++ RD + AM+
Sbjct: 429 FNEMNVRDAVSWTAMV 444
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 28/293 (9%)
Query: 1 MKAQN-PIFNHPILKLLQKCHSL---NTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS 56
MK Q + +P +L C L N KQ+HA ++ T H Y S L+ + K
Sbjct: 261 MKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKC 320
Query: 57 T-YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
YA T+F + V + ++ + + + A ++ + + P+ +T
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGY-GQTGRAEEAVKIFLD-MQRSGIDPDHYTLGQAI 378
Query: 116 KACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQAS--LLNFYAKYGRLCVSRCLFDQISE 173
AC + G H K + H+V S L+ Y K G + S LF++++
Sbjct: 379 SACANVSS-LEEGSQFHG---KAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV 434
Query: 174 PDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISAC 233
D +W ++ ++E + LF M +P+ VTL +ISAC
Sbjct: 435 RDAVSWTAMVSAYAQFGR------------AVETIQLFDKMVQHGLKPDGVTLTGVISAC 482
Query: 234 SNLGALSQGVWTHCYLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQL 284
S G + +G + L+ + + +G + ++D++S+ G L A + + +
Sbjct: 483 SRAGLVEKGQ-RYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGM 534
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 54/236 (22%)
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
I ++P P FLYN ++ ++ S S Y R + + QPN F++ +L A
Sbjct: 32 IIRALPYPETFLYNNIVHAYALMKS------STYARRVFDRIPQPNLFSWNNLLLA---- 81
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
Y+K G + F+++ + D TWN
Sbjct: 82 ---------------------------------YSKAGLISEMESTFEKLPDRDGVTWNV 108
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
L+ + + D + R VTL+ ++ S+ G +S
Sbjct: 109 LIEGYSLSGLVGAAVKAYNT--------MMRDFSANLTR---VTLMTMLKLSSSNGHVSL 157
Query: 242 GVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
G H +++ + VG+ L+ MY+ GC++ A ++F L DR+T YN+++G
Sbjct: 158 GKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMG 213
>AT5G65570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26203968-26206184 FORWARD
LENGTH=738
Length = 738
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 115/285 (40%), Gaps = 27/285 (9%)
Query: 14 KLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFL 73
K Q+ H L + + + G AL + T +KL + + V L
Sbjct: 182 KEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKL-------VLDRVEEKDVVL 234
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
LI ++ A + +L K +QPN +T+ S+ CG+ G +H
Sbjct: 235 ITALIVGYSQKGEDTE-AVKAFQSMLVEK-VQPNEYTYASVL-ISCGNLKDIGNGKLIHG 291
Query: 134 HVLKFLEPPYDHFV--QASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXX 191
++K ++ + Q SLL Y + + S +F I P+ +W +L+
Sbjct: 292 LMVK---SGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGR 348
Query: 192 XXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLR 251
AL F M +PN TL + + CSNL +G H + +
Sbjct: 349 EEM------------ALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTK 396
Query: 252 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ G+ L+D+Y KCGC ++A +FD L++ D N MI
Sbjct: 397 YGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMI 441
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 121/272 (44%), Gaps = 17/272 (6%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVFLYNTLISSFTSH 84
K +H M+ +G + LLT+ + + +L +F I P + +LIS +
Sbjct: 287 KLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQN 346
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ +A + +++ +++PNSFT S + C F+ G +H V K+ D
Sbjct: 347 GRE-EMALIEFRKMM-RDSIKPNSFTLSSALRGCSNLA-MFEEGRQIHGIVTKY-GFDRD 402
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
+ + L++ Y K G ++R +FD +SE D+ + NT++
Sbjct: 403 KYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNG------------FG 450
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTAL 264
EAL LF M +PN+VT+++++ AC+N + +G ++ + L +
Sbjct: 451 REALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKDKIMLTNDHYACM 510
Query: 265 VDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
VD+ + G L A L ++ + D + ++
Sbjct: 511 VDLLGRAGRLEEAEMLTTEVINPDLVLWRTLL 542
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%)
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+ AH+LK P + L++ K G + +R +FD +SE + TWN+L+
Sbjct: 85 KTIQAHMLKSGFPA--EISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIK 142
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
S EA+ ++ M + P+E TL ++ A S+L + +H
Sbjct: 143 HRR------------SKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGL 190
Query: 249 LLRNNLKL-NRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ L++ N FVG+ALVDMY K G A + D++ ++D A+I
Sbjct: 191 AVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALI 239
>AT3G47530.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:17517382-17519157 REVERSE
LENGTH=591
Length = 591
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 126/284 (44%), Gaps = 32/284 (11%)
Query: 25 LKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-------YALTIFSSIPNPTVFLYNTL 77
L+Q+HA +L T L ++ H L S+LA + Y+ +FS NPT+ NT+
Sbjct: 27 LRQIHALLLRTSLIRNSDVFHHFL---SRLALSLIPRDINYSCRVFSQRLNPTLSHCNTM 83
Query: 78 ISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK 137
I +F+ + F L+ + + +L N + K C SG G +H +
Sbjct: 84 IRAFSLSQTPCE-GFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLG-GLQIHGKIFS 141
Query: 138 --FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXX 195
FL D + +L++ Y+ + +FD+I + D +WN L
Sbjct: 142 DGFLS---DSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKR---- 194
Query: 196 XXLEDADLSLEALYLFCDMQMSRR---RPNEVTLVALISACSNLGALSQGVWTHCYLLRN 252
+ + L LF M+ +P+ VT + + AC+NLGAL G H ++ N
Sbjct: 195 --------TRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDEN 246
Query: 253 NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L + LV MYS+CG ++ A Q+F + +R+ + A+I
Sbjct: 247 GLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALI 290
>AT2G36980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15531161-15533038 FORWARD
LENGTH=625
Length = 625
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 131/321 (40%), Gaps = 51/321 (15%)
Query: 9 NHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPN 68
N+ ++ + KC + +V M T+C S L + AL +F +P
Sbjct: 108 NNSLIDMYGKCSDTLSANKVFRDMCCDSRNEVTWC-SLLFAYMNAEQFEAALDVFVEMPK 166
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
F +N +IS +H ++ SL+ +L + +P+ +TF SL AC YG
Sbjct: 167 RVAFAWNIMISGH-AHCGKLESCLSLFKEMLESE-FKPDCYTFSSLMNACSADSSNVVYG 224
Query: 129 PPLHAHVLKFLEPPYDHFVQA--SLLNFYAKYG------RLCVSRCLFDQIS-------- 172
+HA +LK + V+A S+L+FY K G R S + Q+S
Sbjct: 225 RMVHAVMLK---NGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDAC 281
Query: 173 -----------------EPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQ 215
E ++ TW T++ D + +AL F +M
Sbjct: 282 MKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNG---------DGE---QALRFFVEMM 329
Query: 216 MSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLN 275
S + A++ ACS L L G H L+ + +VG ALV++Y+KCG +
Sbjct: 330 KSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIK 389
Query: 276 LACQLFDQLTDRDTFCYNAMI 296
A + F + ++D +N M+
Sbjct: 390 EADRAFGDIANKDLVSWNTML 410
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 25/227 (11%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
AL +F P + + T+I+ + + A + ++ + + F + ++ AC
Sbjct: 290 ALEVFHLAPEKNIVTWTTMITGY-GRNGDGEQALRFFVEMM-KSGVDSDHFAYGAVLHAC 347
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G +G +H ++ Y +V +L+N YAK G + + F I+ DL +
Sbjct: 348 SGLA-LLGHGKMIHGCLIHCGFQGY-AYVGNALVNLYAKCGDIKEADRAFGDIANKDLVS 405
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WNT+L L+ +AL L+ +M S +P+ VT + L++ CS+ G
Sbjct: 406 WNTMLFAFGVH------------GLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGL 453
Query: 239 LSQGVWTHCYLLRNNLKLNRFV-----GTALVDMYSKCGCLNLACQL 280
+ +G C + + +K R T ++DM+ + G L A L
Sbjct: 454 VEEG----CMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDL 496
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 156 AKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQ 215
AK GR+ +R +FD + E D WNT+L L EA+ LF ++
Sbjct: 15 AKSGRIASARQVFDGMPELDTVAWNTMLTSYSRL------------GLHQEAIALFTQLR 62
Query: 216 MSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKC 271
S +P++ + A++S C++LG + G ++R+ + V +L+DMY KC
Sbjct: 63 FSDAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKC 118
>AT3G26782.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9850594-9852682 FORWARD
LENGTH=659
Length = 659
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 29/294 (9%)
Query: 16 LQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTV 71
++ C SL + KQ H Q G + S L+ + S A +F IP +
Sbjct: 83 IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNI 142
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSL----FKACCGSGHWFQY 127
+ ++I + + + + A SL+ +L + ++ S+ + C
Sbjct: 143 VSWTSMIRGYDLNGNALD-AVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201
Query: 128 GPPLHAHVLKFLEPPYDHFVQA--SLLNFYAKYGR--LCVSRCLFDQISEPDLATWNTLL 183
+H+ V+K +D V +LL+ YAK G + V+R +FDQI + D ++N+++
Sbjct: 202 TESIHSFVIK---RGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIM 258
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRP-NEVTLVALISACSNLGALSQG 242
+ +S EA +F + ++ N +TL ++ A S+ GAL G
Sbjct: 259 SVYAQ------------SGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIG 306
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++R L+ + VGT+++DMY KCG + A + FD++ +++ + AMI
Sbjct: 307 KCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMI 360
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 18/228 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A IF I + YN+++S + + S + AF ++ R++ +K + N+ T ++ A
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVY-AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAV 297
Query: 119 CGSGHWFQYGPPLHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
SG + G +H V++ LE D V S+++ Y K GR+ +R FD++ ++
Sbjct: 298 SHSGA-LRIGKCIHDQVIRMGLED--DVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVR 354
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
+W ++ + +AL LF M S RPN +T V++++ACS+ G
Sbjct: 355 SWTAMIAGYGMHGH------------AAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402
Query: 238 ALSQG-VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+G W + R ++ +VD+ + G L A L ++
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 167 LFDQ-ISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVT 225
LF++ + + D+ +WN+++ L + S EAL F M+ P +
Sbjct: 31 LFNRYVDKTDVFSWNSVIAD------------LARSGDSAEALLAFSSMRKLSLYPTRSS 78
Query: 226 LVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLT 285
I ACS+L + G TH + + FV +AL+ MYS CG L A ++FD++
Sbjct: 79 FPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138
Query: 286 DRDTFCYNAMI 296
R+ + +MI
Sbjct: 139 KRNIVSWTSMI 149
>AT4G22760.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11960553-11962289 FORWARD
LENGTH=578
Length = 578
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 39/317 (12%)
Query: 6 PIFNHPILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALT 61
P +H + +L+ C + + K +HAQ L GL Y + L+ + S+L A
Sbjct: 101 PPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGLCGCVYVQTGLVGLYSRLGYIELAKK 160
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
F I +N+L+ + S ++ A ++++I + N K G+
Sbjct: 161 AFDDIAEKNTVSWNSLLHGYL-ESGELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGN 219
Query: 122 G-------------HW-FQYGPPLHAHVLKFLEPPYDHFVQA------SLLNFYAKYGRL 161
W G ++ +K +D Q ++++ Y K G +
Sbjct: 220 ACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDV 279
Query: 162 CVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM--QMSRR 219
+ LF +S+ D ++ ++ +AL LF M + S
Sbjct: 280 QSAEELFRLMSKKDKLVYDAMIACYTQNGKPK------------DALKLFAQMLERNSYI 327
Query: 220 RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQ 279
+P+E+TL +++SA S LG S G W Y+ + +K++ + T+L+D+Y K G A +
Sbjct: 328 QPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFK 387
Query: 280 LFDQLTDRDTFCYNAMI 296
+F L +DT Y+AMI
Sbjct: 388 MFSNLNKKDTVSYSAMI 404
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 117/302 (38%), Gaps = 29/302 (9%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGL----ALHTYCLSHLLTISSKLASTYALTIFSSIPNPT 70
LQ+C L KQVHAQ++ + + H S+ TY I
Sbjct: 9 FLQRCVVLEQAKQVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNIVTYVKRILKGFNGHD 68
Query: 71 VFLYNTLISSFTSH---SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
F + L+ + H + + ++N + P+S S+ +AC G
Sbjct: 69 SFSWGCLVRFLSQHRKFKETVDVYIDMHN-----SGIPPSSHAVTSVLRAC-GKMENMVD 122
Query: 128 GPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
G P+HA LK Y VQ L+ Y++ G + +++ FD I+E + +WN+LL
Sbjct: 123 GKPIHAQALKNGLCGCVY---VQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHG 179
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
+ D +A+ + ++ + +L SA S +
Sbjct: 180 YLESGELDEARRVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLKSPASWNILI 239
Query: 246 HCYLLRNNLKLNRFV--------GTALVDM---YSKCGCLNLACQLFDQLTDRDTFCYNA 294
Y+ +KL R G + + M Y+K G + A +LF ++ +D Y+A
Sbjct: 240 GGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDA 299
Query: 295 MI 296
MI
Sbjct: 300 MI 301
>AT2G04860.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:1706787-1708865 REVERSE
LENGTH=692
Length = 692
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 90/204 (44%), Gaps = 18/204 (8%)
Query: 97 RILAHKTLQPNSFTFPSLFKACCGSGHWFQYG-PPLHAHVLKFLEPPYDHFV--QASLLN 153
R L +L PN FT +A S + F+ + H+ K D FV + SLLN
Sbjct: 37 RDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTHLTK---SGLDRFVYVKTSLLN 93
Query: 154 FYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCD 213
Y K G + ++ LFD++ E D WN L+ +A LF
Sbjct: 94 LYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRN------------GYECDAWKLFIV 141
Query: 214 MQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGC 273
M P+ TLV L+ C G +SQG H ++ L+L+ V AL+ YSKC
Sbjct: 142 MLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAE 201
Query: 274 LNLACQLFDQLTDRDTFCYNAMIG 297
L A LF ++ D+ T +N MIG
Sbjct: 202 LGSAEVLFREMKDKSTVSWNTMIG 225
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 107/232 (46%), Gaps = 16/232 (6%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
IL +K ++ +H + +GL T ++ L+T+ SK L +F +
Sbjct: 353 ILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETP 412
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ +N++IS S + AF ++++++ L P++ T SL A C G
Sbjct: 413 LISWNSVISGCV-QSGRASTAFEVFHQMMLTGGLLPDAITIASLL-AGCSQLCCLNLGKE 470
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH + L+ ++FV +L++ YAK G + +F I P ATWN+++
Sbjct: 471 LHGYTLRN-NFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSL-- 527
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ L AL + +M+ +P+E+T + ++SAC++ G + +G
Sbjct: 528 ----------SGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEG 569
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 104 LQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCV 163
++ ++ + C S H G LH + +K V L+ Y+K+ +
Sbjct: 343 MKIDAVALVGILHGCKKSSH-IDIGMSLHGYAIKS-GLCTKTLVVNGLITMYSKFDDVET 400
Query: 164 SRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRR-PN 222
LF+Q+ E L +WN+++ + + A +F M ++ P+
Sbjct: 401 VLFLFEQLQETPLISWNSVISGCV------------QSGRASTAFEVFHQMMLTGGLLPD 448
Query: 223 EVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFD 282
+T+ +L++ CS L L+ G H Y LRNN + FV TAL+DMY+KCG A +F
Sbjct: 449 AITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFK 508
Query: 283 QLTDRDTFCYNAMI 296
+ T +N+MI
Sbjct: 509 SIKAPCTATWNSMI 522
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 115/280 (41%), Gaps = 23/280 (8%)
Query: 18 KCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNT 76
+C ++ + VH +GL L + + L++ SK A A +F + + + +NT
Sbjct: 163 QCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNT 222
Query: 77 LISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVL 136
+I ++ S S A +++ + K ++ + T +L A PLH V+
Sbjct: 223 MIGAY-SQSGLQEEAITVFKNMF-EKNVEISPVTIINLLSAHVSH-------EPLHCLVV 273
Query: 137 KFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXX 196
K D V SL+ Y++ G L + L+ + + +++
Sbjct: 274 K-CGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYA--------- 323
Query: 197 XLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKL 256
E D+ + +Y Q+ + + V LV ++ C + G+ H Y +++ L
Sbjct: 324 --EKGDMDIAVVYFSKTRQLCMK-IDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCT 380
Query: 257 NRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
V L+ MYSK + LF+QL + +N++I
Sbjct: 381 KTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWNSVI 420
>AT2G37320.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15667223-15668725 FORWARD
LENGTH=500
Length = 500
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 119 CGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
CG F+ G H LK F+ D ++ +SL+ Y G + + +F+++ E ++
Sbjct: 130 CGLNRDFRTGSGFHCLALKGGFIS---DVYLGSSLVVLYRDSGEVENAYKVFEEMPERNV 186
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
+W ++ D+ L+ L+ M+ S PN+ T AL+SAC+
Sbjct: 187 VSWTAMISGFAQEWR---------VDICLK---LYSKMRKSTSDPNDYTFTALLSACTGS 234
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
GAL QG HC L LK + +L+ MY KCG L A ++FDQ +++D +N+MI
Sbjct: 235 GALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMI 294
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 26/262 (9%)
Query: 29 HAQMLTTGLALHTYCLSHLLTI---SSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHS 85
H L G Y S L+ + S ++ + Y +F +P V + +IS F +
Sbjct: 143 HCLALKGGFISDVYLGSSLVVLYRDSGEVENAY--KVFEEMPERNVVSWTAMISGF-AQE 199
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
++ + LY++ + T PN +TF +L AC GSG Q G +H L Y H
Sbjct: 200 WRVDICLKLYSK-MRKSTSDPNDYTFTALLSACTGSGALGQ-GRSVHCQTLHMGLKSYLH 257
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSL 205
+ SL++ Y K G L + +FDQ S D+ +WN+++ L++
Sbjct: 258 -ISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQH------------GLAM 304
Query: 206 EALYLF-CDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLK--LNRFVGT 262
+A+ LF M S +P+ +T + ++S+C + G + +G + + LK LN + +
Sbjct: 305 QAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKPELNHY--S 362
Query: 263 ALVDMYSKCGCLNLACQLFDQL 284
LVD+ + G L A +L + +
Sbjct: 363 CLVDLLGRFGLLQEALELIENM 384
>AT1G19720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:6819926-6822610 REVERSE
LENGTH=894
Length = 894
Score = 82.4 bits (202), Expect = 4e-16, Method: Composition-based stats.
Identities = 86/348 (24%), Positives = 147/348 (42%), Gaps = 71/348 (20%)
Query: 13 LKLLQKC---HSLNTLKQVHAQMLTTGLALH--TYCLSHLLTISSKLASTY-ALTIFSSI 66
LKLL+ C S++ + +HA+ GL + + LL++ +K A +F S+
Sbjct: 85 LKLLESCIDSGSIHLGRILHARF---GLFTEPDVFVETKLLSMYAKCGCIADARKVFDSM 141
Query: 67 PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQ 126
+F ++ +I +++ + +A L+ R++ + P+ F FP + + C G +
Sbjct: 142 RERNLFTWSAMIGAYSRENRWREVA-KLF-RLMMKDGVLPDDFLFPKILQGCANCGD-VE 198
Query: 127 YGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISE------------- 173
G +H+ V+K L V S+L YAK G L + F ++ E
Sbjct: 199 AGKVIHSVVIK-LGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAY 257
Query: 174 ----------------------PDLATWNTLLXXXXXXXXXXXXXXLED--------AD- 202
P L TWN L+ L AD
Sbjct: 258 CQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADV 317
Query: 203 --------------LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
+ +AL +F M ++ PN VT+++ +SACS L ++QG H
Sbjct: 318 FTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSI 377
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ + VG +LVDMYSKCG L A ++FD + ++D + +N+MI
Sbjct: 378 AVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMI 425
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 110 TFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFD 169
T+ L ++C SG G LHA F EP D FV+ LL+ YAK G + +R +FD
Sbjct: 83 TYLKLLESCIDSGS-IHLGRILHARFGLFTEP--DVFVETKLLSMYAKCGCIADARKVFD 139
Query: 170 QISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVAL 229
+ E +L TW+ ++ + E LF M P++ +
Sbjct: 140 SMRERNLFTWSAMIGAYSR------------ENRWREVAKLFRLMMKDGVLPDDFLFPKI 187
Query: 230 ISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDT 289
+ C+N G + G H +++ + V +++ +Y+KCG L+ A + F ++ +RD
Sbjct: 188 LQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDV 247
Query: 290 FCYNAMI 296
+N+++
Sbjct: 248 IAWNSVL 254
Score = 68.2 bits (165), Expect = 6e-12, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 50/290 (17%)
Query: 12 ILKLLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIP 67
I+ + C L + Q VH+ + G + L+ + SK A +F S+
Sbjct: 355 IMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVK 414
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
N V+ +N++I+ + + A+ L+ R + L+PN T+ ++ +G
Sbjct: 415 NKDVYTWNSMITGYC-QAGYCGKAYELFTR-MQDANLRPNIITWNTMISGYIKNG----- 467
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
D L K G++ + + ATWN ++
Sbjct: 468 ----------------DEGEAMDLFQRMEKDGKV-----------QRNTATWNLIIAGYI 500
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
EAL LF MQ SR PN VT+++L+ AC+NL H
Sbjct: 501 QNGKKD------------EALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHG 548
Query: 248 YLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+LR NL V AL D Y+K G + + +F + +D +N++IG
Sbjct: 549 CVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIG 598
>AT3G11460.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:3608250-3610121 FORWARD
LENGTH=623
Length = 623
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 26/291 (8%)
Query: 15 LLQKCHSLN---TLKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPT 70
+L+ C SL+ + +Q+H + G + L+ L+++ K A +F P +
Sbjct: 59 ILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSS 118
Query: 71 VF--LYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
YN LIS +T++S A+ R + + +S T L C + G
Sbjct: 119 QLSVCYNALISGYTANSKVTDAAYMF--RRMKETGVSVDSVTMLGLVPLCT-VPEYLWLG 175
Query: 129 PPLHAHVLKFLEPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXX 186
LH +K D V S + Y K G + R LFD++ L TWN ++
Sbjct: 176 RSLHGQCVK---GGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGY 232
Query: 187 XXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTH 246
L+ + L L+ M+ S P+ TLV+++S+C++LGA G
Sbjct: 233 SQN------------GLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVG 280
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+ N N FV A + MY++CG L A +FD + + + AMIG
Sbjct: 281 KLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIG 331
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 25/278 (8%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYA-LTIFSSIPNPTVFLYNTLISSFTSH 84
+ +H Q + GL L+ +T+ K S A +F +P + +N +IS + S
Sbjct: 176 RSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGY-SQ 234
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY- 143
+ + LY + + + P+ FT S+ +C G + V K +E
Sbjct: 235 NGLAYDVLELYEQ-MKSSGVCPDPFTLVSVLSSCAHLG-----AKKIGHEVGKLVESNGF 288
Query: 144 --DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
+ FV + ++ YA+ G L +R +FD + L +W ++
Sbjct: 289 VPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMH------------ 336
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRN-NLKLNRFV 260
+ L LF DM RP+ V ++SACS+ G +G+ + R L+
Sbjct: 337 GMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEH 396
Query: 261 GTALVDMYSKCGCLNLACQLFDQL-TDRDTFCYNAMIG 297
+ LVD+ + G L+ A + + + + D + A++G
Sbjct: 397 YSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLG 434
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 34/243 (13%)
Query: 70 TVFLYNTLISSFTSHSSQIHL-----------AFSLYNRILAHKTLQPNSFTFPSLFKAC 118
T F+ N+ +++ S + L + SLY +L + P++F+FP + K+C
Sbjct: 5 TSFVRNSAVAAVASTPWNVRLRELAYQSLFSESISLYRSMLRSGS-SPDAFSFPFILKSC 63
Query: 119 CGSGHWFQYGPPLHAHVLKF---LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD 175
S G LH HV K EP FV +L++ Y K G + +R +F++ +
Sbjct: 64 A-SLSLPVSGQQLHCHVTKGGCETEP----FVLTALISMYCKCGLVADARKVFEENPQSS 118
Query: 176 LAT--WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISAC 233
+ +N L+ +A Y+F M+ + + VT++ L+ C
Sbjct: 119 QLSVCYNALISGYTANSKVT------------DAAYMFRRMKETGVSVDSVTMLGLVPLC 166
Query: 234 SNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYN 293
+ L G H ++ L V + + MY KCG + +LFD++ + +N
Sbjct: 167 TVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWN 226
Query: 294 AMI 296
A+I
Sbjct: 227 AVI 229
>AT1G43980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:16687637-16689502 REVERSE
LENGTH=621
Length = 621
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 26/243 (10%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTS---HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
AL +F +P V +NT+IS S H I + F + ++P FTF L
Sbjct: 89 ALDLFDEMPERDVVSWNTMISGLVSCGFHEYGIRVFFDM-----QRWEIRPTEFTFSILA 143
Query: 116 K-ACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
C ++G +H + + Y+ V S+++ Y + G + +F + +
Sbjct: 144 SLVTC-----VRHGEQIHGNAICSGVSRYNLVVWNSVMDMYRRLGVFDYALSVFLTMEDR 198
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
D+ +WN L+ + +++L+ +L +M++ +P+E T+ ++S CS
Sbjct: 199 DVVSWNCLILSCSDSG---------NKEVALDQFWLMREMEI---QPDEYTVSMVVSICS 246
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNA 294
+L LS+G ++ N V A +DM+SKC L+ + +LF +L D+ N+
Sbjct: 247 DLRELSKGKQALALCIKMGFLSNSIVLGAGIDMFSKCNRLDDSVKLFRELEKWDSVLCNS 306
Query: 295 MIG 297
MIG
Sbjct: 307 MIG 309
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 109/235 (46%), Gaps = 21/235 (8%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
++ + L+ KQ A + G ++ L + + SK ++ +F +
Sbjct: 241 VVSICSDLRELSKGKQALALCIKMGFLSNSIVLGAGIDMFSKCNRLDDSVKLFRELEKWD 300
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAH-KTLQPNSFTFPSLFKACCGSGHWFQYGP 129
L N++I S++ H A L+ ILA ++++P+ FTF S+ + + +G
Sbjct: 301 SVLCNSMIGSYSWHCCG-EDALRLF--ILAMTQSVRPDKFTFSSVLSSM--NAVMLDHGA 355
Query: 130 PLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+H+ V+K L D V SL+ Y K G + ++ +F + DL WNT++
Sbjct: 356 DVHSLVIK-LGFDLDTAVATSLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTVIMG---- 410
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVALISACSNLGALSQGV 243
L ++E+L +F + M++ +P+ VTL+ ++ AC G +++G+
Sbjct: 411 --------LARNSRAVESLAIFNQLLMNQSLKPDRVTLMGILVACCYAGFVNEGI 457
>AT4G16470.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:9287862-9289541 REVERSE
LENGTH=501
Length = 501
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 14/193 (7%)
Query: 104 LQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCV 163
LQ T+ L + C + + G +HA + + + +++ LL YA G L
Sbjct: 104 LQVEPETYAVLLQECKQRKEYTK-GKRIHAQMF-VVGFALNEYLKVKLLILYALSGDLQT 161
Query: 164 SRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNE 223
+ LF + DL WN ++ L E L+++ DM+ +R P++
Sbjct: 162 AGILFRSLKIRDLIPWNAMISGYV------------QKGLEQEGLFIYYDMRQNRIVPDQ 209
Query: 224 VTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQ 283
T ++ ACS L L G H +++ +K N V +ALVDMY KC + ++FDQ
Sbjct: 210 YTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQ 269
Query: 284 LTDRDTFCYNAMI 296
L+ R+ + ++I
Sbjct: 270 LSTRNVITWTSLI 282
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 27/271 (9%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLL---TISSKLASTYALTIFSSIPN 68
LLQ+C K++HAQM G AL+ Y LL +S L + A +F S+
Sbjct: 114 LLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQT--AGILFRSLKI 171
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
+ +N +IS + + F Y+ + + P+ +TF S+F+AC ++G
Sbjct: 172 RDLIPWNAMISGYVQKGLEQEGLFIYYD--MRQNRIVPDQYTFASVFRACSALDR-LEHG 228
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
HA ++K + V ++L++ Y K +FDQ+S ++ TW +L+
Sbjct: 229 KRAHAVMIKRCIKS-NIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGY 287
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
E L F M+ RPN VT + +++AC++ G + +G W H Y
Sbjct: 288 HGKVS------------EVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKG-WEHFY 334
Query: 249 LLRNNLKLNRFVG--TALVDMYSKCGCLNLA 277
++ + + A+VD + G L A
Sbjct: 335 SMKRDYGIEPEGQHYAAMVDTLGRAGRLQEA 365
>AT1G03510.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:876258-877547 REVERSE
LENGTH=429
Length = 429
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 32/219 (14%)
Query: 107 NSFTFP------SLFKACCGSGHWFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAKY 158
+SF P SL C + G +HAH +K FL P FV +LL+ Y K
Sbjct: 40 SSFALPLDAHVFSLALKSCAAAFRPVLGGSVHAHSVKSNFLSNP---FVGCALLDMYGKC 96
Query: 159 GRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA----------------- 201
+ +R LFD+I + + WN ++ L +A
Sbjct: 97 LSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNESSFNAIIKGL 156
Query: 202 ----DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLN 257
D S A+ + M R +PN +TL+AL+SACS +GA H Y RN ++ +
Sbjct: 157 VGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSACSAIGAFRLIKEIHSYAFRNLIEPH 216
Query: 258 RFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ + LV+ Y +CG + +FD + DRD ++++I
Sbjct: 217 PQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAWSSLI 255
>AT3G29230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:11188803-11190605 FORWARD
LENGTH=600
Length = 600
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 58/287 (20%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTV 71
L+ L KC +LN +KQ+HAQ++ L + L++ S T A+ +F+ + P V
Sbjct: 23 LQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
L N+LI + + +SQ + AF +++ + L ++FT+P L KAC G W +
Sbjct: 83 HLCNSLIRAH-AQNSQPYQAFFVFSE-MQRFGLFADNFTYPFLLKACSGQS-WLPVVKMM 139
Query: 132 HAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRC--LFDQISEPDLATWNTLLXXXXXX 189
H H+ K L D +V +L++ Y++ G L V LF+++SE D +WN++L
Sbjct: 140 HNHIEK-LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLG----- 193
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
L +++ +RR +E+ LIS W
Sbjct: 194 -----------------GLVKAGELRDARRLFDEMPQRDLIS------------W----- 219
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++D Y++C ++ A +LF+++ +R+T ++ M+
Sbjct: 220 ------------NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMV 254
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 34/297 (11%)
Query: 8 FNHPILKLLQKCHS---LNTLKQVHAQMLTTGLALHTYCLSHLLTISSK---LASTYALT 61
F +P L L+ C L +K +H + GL+ Y + L+ S+ L A+
Sbjct: 118 FTYPFL--LKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMK 175
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F + +N+++ + ++ A L++ + + N T + C
Sbjct: 176 LFEKMSERDTVSWNSMLGGLVK-AGELRDARRLFDEMPQRDLISWN--TMLDGYARCREM 232
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP--DLATW 179
F+ + P + ++++ Y+K G + ++R +FD++ P ++ TW
Sbjct: 233 SKAFELFEKM---------PERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTW 283
Query: 180 NTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGAL 239
++ + L EA L M S + + ++++++AC+ G L
Sbjct: 284 TIIIAGYA------------EKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLL 331
Query: 240 SQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
S G+ H L R+NL N +V AL+DMY+KCG L A +F+ + +D +N M+
Sbjct: 332 SLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTML 388
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 22/244 (9%)
Query: 59 ALTIFSSIPNPT--VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFK 116
A +F +P P V + +I+ + + + A L ++++A L+ ++ S+
Sbjct: 266 ARVMFDKMPLPAKNVVTWTIIIAGY-AEKGLLKEADRLVDQMVA-SGLKFDAAAVISILA 323
Query: 117 ACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
AC SG G +H+ +LK + +V +LL+ YAK G L + +F+ I + DL
Sbjct: 324 ACTESG-LLSLGMRIHS-ILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDL 381
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
+WNT+L EA+ LF M+ RP++VT +A++ +C++
Sbjct: 382 VSWNTMLHGLGVHGH------------GKEAIELFSRMRREGIRPDKVTFIAVLCSCNHA 429
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQL-TDRDTFCYN 293
G + +G+ + Y + L V LVD+ + G L A ++ + + + +
Sbjct: 430 GLIDEGI-DYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWG 488
Query: 294 AMIG 297
A++G
Sbjct: 489 ALLG 492
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 167 LFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTL 226
+F+Q+ EP++ N+L+ +A ++F +MQ + T
Sbjct: 73 VFNQVQEPNVHLCNSLIRAHAQNSQ------------PYQAFFVFSEMQRFGLFADNFTY 120
Query: 227 VALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNL--ACQLFDQL 284
L+ ACS L H ++ + L + +V AL+D YS+CG L + A +LF+++
Sbjct: 121 PFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKM 180
Query: 285 TDRDTFCYNAMIG 297
++RDT +N+M+G
Sbjct: 181 SERDTVSWNSMLG 193
>AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopeptide
repeat (PPR) superfamily protein | chr5:1010894-1013584
REVERSE LENGTH=896
Length = 896
Score = 80.5 bits (197), Expect = 1e-15, Method: Composition-based stats.
Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 38/298 (12%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY--------ALTIF 63
+L+L + H + K VHA L + + L STY A+ +F
Sbjct: 86 LLRLSAQYHDVEVTKAVHASFLKL--------REEKTRLGNALISTYLKLGFPREAILVF 137
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGH 123
S+ +PTV Y LIS F+ + +I A ++ R+ +QPN +TF ++ AC
Sbjct: 138 VSLSSPTVVSYTALISGFSRLNLEIE-ALKVFFRMRKAGLVQPNEYTFVAILTACVRVSR 196
Query: 124 WFQYGPPLHAHVLK--FLEPPYDHFVQASLLNFYAK-YGRLCVSRC-LFDQISEPDLATW 179
F G +H ++K FL FV SL++ Y K G C LFD+I + D+A+W
Sbjct: 197 -FSLGIQIHGLIVKSGFLNSV---FVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASW 252
Query: 180 NTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGA 238
NT++ L S +A LF +M ++ + TL L+S+C++
Sbjct: 253 NTVVSS------------LVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSV 300
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L +G H +R L V AL+ YSK + L++ + +D + MI
Sbjct: 301 LLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMI 358
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 19/241 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A+ IF+++ YN L++ F + + A L+ +L + ++ F+ S AC
Sbjct: 370 AVEIFANVTEKNTITYNALMAGFCRNGHGLK-ALKLFTDML-QRGVELTDFSLTSAVDAC 427
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
G + +H +KF ++ +Q +LL+ + R+ + +FDQ
Sbjct: 428 -GLVSEKKVSEQIHGFCIKF-GTAFNPCIQTALLDMCTRCERMADAEEMFDQ-------- 477
Query: 179 WNTLLXXXXXXXXX---XXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
W + L L D +SL L C+ ++ +EV+L +++ C
Sbjct: 478 WPSNLDSSKATTSIIGGYARNGLPDKAVSLFHRTL-CEQKLFL---DEVSLTLILAVCGT 533
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
LG G HCY L+ + +G +L+ MY+KC + A ++F+ + + D +N++
Sbjct: 534 LGFREMGYQIHCYALKAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSL 593
Query: 296 I 296
I
Sbjct: 594 I 594
Score = 58.2 bits (139), Expect = 8e-09, Method: Composition-based stats.
Identities = 58/279 (20%), Positives = 114/279 (40%), Gaps = 25/279 (8%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTY---ALTIFSSIPNPTVFLYNTLISSFTS 83
Q+H ++ +G + + L+++ K + + L +F IP V +NT++SS
Sbjct: 202 QIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASWNTVVSSLVK 261
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
H AF L+ + + +SFT +L +C S + G LH ++ +
Sbjct: 262 EGKS-HKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLR-GRELHGRAIR-IGLMQ 318
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL----- 198
+ V +L+ FY+K+ + L++ + D T+ ++ +
Sbjct: 319 ELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANVT 378
Query: 199 EDADLS--------------LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
E ++ L+AL LF DM + +L + + AC +
Sbjct: 379 EKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQ 438
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQ 283
H + ++ N + TAL+DM ++C + A ++FDQ
Sbjct: 439 IHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQ 477
>AT4G19220.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10505266-10508121 REVERSE
LENGTH=932
Length = 932
Score = 80.1 bits (196), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D +Q +L+ Y + + + +F IS+P+L +WN ++ L
Sbjct: 615 DTQLQNTLITMYGRCKDIESAVKVFGLISDPNLCSWNCVISA------------LSQNKA 662
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
E LF ++++ PNE+T V L+SA + LG+ S G+ HC+L+R + N FV A
Sbjct: 663 GREVFQLFRNLKL---EPNEITFVGLLSASTQLGSTSYGMQAHCHLIRRGFQANPFVSAA 719
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
LVDMYS CG L ++F +N++I
Sbjct: 720 LVDMYSSCGMLETGMKVFRNSGVNSISAWNSVI 752
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 150 SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALY 209
+L+N YAK L + C+F + D+ +WNT++ ++L
Sbjct: 228 ALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPR------------KSLQ 275
Query: 210 LFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNL--KLNRFVGTALVDM 267
F M S + + VT +ISACS++ L+ G H ++++ + + VG +++ M
Sbjct: 276 YFKSMTGSGQEADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISM 335
Query: 268 YSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
YSKCG A +F++L RD NA++
Sbjct: 336 YSKCGDTEAAETVFEELVCRDVISSNAIL 364
Score = 62.4 bits (150), Expect = 3e-10, Method: Composition-based stats.
Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 21/274 (7%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHSS 86
+H + TGL + + L+ + +K + + A +F+ + + + +NT+++ ++
Sbjct: 210 LHCLAIETGLVGDSSLCNALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLANG- 268
Query: 87 QIHLAFSL-YNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
H SL Y + + + ++ TF + AC S G LH V+K P H
Sbjct: 269 --HPRKSLQYFKSMTGSGQEADTVTFSCVISAC-SSIEELTLGESLHGLVIKSGYSPEAH 325
Query: 146 F-VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
V S+++ Y+K G + +F+++ D+ + N +L +
Sbjct: 326 VSVGNSIISMYSKCGDTEAAETVFEELVCRDVISSNAILNGFAAN------------GMF 373
Query: 205 LEALYLFCDMQ-MSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRF-VGT 262
EA + MQ + + +P+ T+V++ S C +L +G H Y +R ++ V
Sbjct: 374 EEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRALEVIN 433
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++DMY KCG A LF T RD +N+MI
Sbjct: 434 SVIDMYGKCGLTTQAELLFKTTTHRDLVSWNSMI 467
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 34/226 (15%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISS 80
++ +L+++ Q+ T + ++ C I S A+ +F I +P + +N +IS+
Sbjct: 607 AIKSLRELDTQLQNTLITMYGRCKD----IES------AVKVFGLISDPNLCSWNCVISA 656
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK--F 138
+ + + + F L+ + L+PN TF L A G YG H H+++ F
Sbjct: 657 LSQNKAGREV-FQLFRNL----KLEPNEITFVGLLSASTQLGS-TSYGMQAHCHLIRRGF 710
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
P FV A+L++ Y+ G L +F ++ WN+++
Sbjct: 711 QANP---FVSAALVDMYSSCGMLETGMKVFRNSGVNSISAWNSVISAHGFH--------- 758
Query: 199 EDADLSLEALYLFCDMQM-SRRRPNEVTLVALISACSNLGALSQGV 243
+ +A+ LF ++ S PN+ + ++L+SACS+ G + +G+
Sbjct: 759 ---GMGEKAMELFKELSSNSEMEPNKSSFISLLSACSHSGFIDEGL 801
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 39/245 (15%)
Query: 56 STYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
+T A +F + + + +N++IS+F S + H A +L+ +++ + S +
Sbjct: 445 TTQAELLFKTTTHRDLVSWNSMISAF-SQNGFTHKAKNLFKEVVSEYSCSKFSLSTVLAI 503
Query: 116 KACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP- 174
C S +G +H + K G L + + +SE
Sbjct: 504 LTSCDSSDSLIFGKSVHC--------------------WLQKLGDLTSAFLRLETMSETR 543
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR---RPNEVTLVALIS 231
DL +WN+++ + LE+L F MSR R + +TL+ IS
Sbjct: 544 DLTSWNSVISGCA------------SSGHHLESLRAF--QAMSREGKIRHDLITLLGTIS 589
Query: 232 ACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
A NLG + QG H +++ +L+ + L+ MY +C + A ++F ++D +
Sbjct: 590 ASGNLGLVLQGRCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAVKVFGLISDPNLCS 649
Query: 292 YNAMI 296
+N +I
Sbjct: 650 WNCVI 654
>AT4G08210.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:5183813-5185873 REVERSE
LENGTH=686
Length = 686
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 59/307 (19%)
Query: 16 LQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLT--ISSKLASTYALTIFSSIPNPT 70
L+ C + K+ + A ++ G++ + + +++++ + +L S A +F +
Sbjct: 12 LRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSD-AHKVFDEMSERN 70
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ + T++S +TS + + A LY R+L + N F + ++ KAC G Q G
Sbjct: 71 IVTWTTMVSGYTS-DGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGD-IQLGIL 128
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
++ + K D + S+++ Y K GRL + F +I P +WNTL+
Sbjct: 129 VYERIGKE-NLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYC--- 184
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALIS------------------- 231
A L EA+ LF M +PN V+ LIS
Sbjct: 185 ---------KAGLMDEAVTLFHRMP----QPNVVSWNCLISGFVDKGSPRALEFLVRMQR 231
Query: 232 ---------------ACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNL 276
ACS G L+ G HC ++++ L+ + F +AL+DMYS CG L
Sbjct: 232 EGLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCGSLIY 291
Query: 277 ACQLFDQ 283
A +F Q
Sbjct: 292 AADVFHQ 298
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A+T+F +P P V +N LIS F S L F + + + L + F P KAC
Sbjct: 192 AVTLFHRMPQPNVVSWNCLISGFVDKGSPRALEFLVR---MQREGLVLDGFALPCGLKAC 248
Query: 119 CGSGHWFQYGPPLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS---EP 174
G G LH V+K LE F ++L++ Y+ G L + +F Q
Sbjct: 249 S-FGGLLTMGKQLHCCVVKSGLESS--PFAISALIDMYSNCGSLIYAADVFHQEKLAVNS 305
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
+A WN++L + + AL+L + S + TL + C
Sbjct: 306 SVAVWNSMLSGFLIN------------EENEAALWLLLQIYQSDLCFDSYTLSGALKICI 353
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNA 294
N L G+ H ++ + +L+ VG+ LVD+++ G + A +LF +L ++D ++
Sbjct: 354 NYVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSG 413
Query: 295 MI 296
+I
Sbjct: 414 LI 415
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 28/279 (10%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIP---NPTVFLYNTLISSF 81
KQ+H ++ +GL + +S L+ + S S YA +F N +V ++N+++S F
Sbjct: 258 KQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVWNSMLSGF 317
Query: 82 ---TSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF 138
+ + + L +Y L +S+T K C ++ L H L
Sbjct: 318 LINEENEAALWLLLQIYQSDLCF-----DSYTLSGALKICI---NYVNLRLGLQVHSLVV 369
Query: 139 LEP-PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXX 197
+ D+ V + L++ +A G + + LF ++ D+ ++ L+
Sbjct: 370 VSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCV---------- 419
Query: 198 LEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLN 257
+ + A YLF ++ ++ + ++ CS+L +L G H ++ +
Sbjct: 420 --KSGFNSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESE 477
Query: 258 RFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
TALVDMY KCG ++ LFD + +RD + +I
Sbjct: 478 PVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGII 516
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLAT 178
CG F+ G + AHV+K + F+ ++++ Y + L + +FD++SE ++ T
Sbjct: 15 CGKVQAFKRGESIQAHVIK-QGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVT 73
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRP-NEVTLVALISACSNLG 237
W T++ +A+ L+ M S NE A++ AC +G
Sbjct: 74 WTTMVSGYTSDGKPN------------KAIELYRRMLDSEEEAANEFMYSAVLKACGLVG 121
Query: 238 ALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ G+ + + + NL+ + + ++VDMY K G L A F ++ + +N +I
Sbjct: 122 DIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLI 180
>AT5G04780.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:1384540-1386447 FORWARD
LENGTH=635
Length = 635
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 17/288 (5%)
Query: 10 HPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPN 68
H IL+L + ++ K H +++ L L+ L+ SK A +F +
Sbjct: 65 HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLE 124
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
++ +NT+I +T + + A ++ + ++ + + FT S+ AC + +
Sbjct: 125 RSLVSWNTMIGLYTRNRMESE-ALDIFLE-MRNEGFKFSEFTISSVLSACGVNCDALEC- 181
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
LH +K + +V +LL+ YAK G + + +F+ + + TW++++
Sbjct: 182 KKLHCLSVKTC-IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQ 240
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
EAL L+ Q N+ TL ++I ACSNL AL +G H
Sbjct: 241 NKNYE------------EALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAV 288
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ ++ N FV ++ VDMY+KCG L + +F ++ +++ +N +I
Sbjct: 289 ICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTII 336
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 20/262 (7%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSH 84
K++H + T + L+ Y + LL + +K A+ +F S+ + + ++++++ +
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYV-Q 240
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYD 144
+ A LY R +L+ N FT S+ AC + G +HA + K +
Sbjct: 241 NKNYEEALLLYRRA-QRMSLEQNQFTLSSVICACSNLAALIE-GKQMHAVICKS-GFGSN 297
Query: 145 HFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLS 204
FV +S ++ YAK G L S +F ++ E +L WNT++
Sbjct: 298 VFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPK----------- 346
Query: 205 LEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG--T 262
E + LF MQ PNEVT +L+S C + G + +G L+R L+ V +
Sbjct: 347 -EVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEG-RRFFKLMRTTYGLSPNVVHYS 404
Query: 263 ALVDMYSKCGCLNLACQLFDQL 284
+VD+ + G L+ A +L +
Sbjct: 405 CMVDILGRAGLLSEAYELIKSI 426
>AT3G02330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:473881-476592 REVERSE
LENGTH=903
Length = 903
Score = 78.2 bits (191), Expect = 6e-15, Method: Composition-based stats.
Identities = 68/281 (24%), Positives = 126/281 (44%), Gaps = 29/281 (10%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
+L+ C +L+ L+ Q+HA L + A + L + +K + A +F + N
Sbjct: 287 VLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLN 346
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC---GSGHWFQ- 126
YN +I+ ++ A L++R+++ L + + +F+AC G Q
Sbjct: 347 RQSYNAMITGYSQEEHGFK-ALLLFHRLMS-SGLGFDEISLSGVFRACALVKGLSEGLQI 404
Query: 127 YGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXX 186
YG + + + D V + ++ Y K L + +FD++ D +WN ++
Sbjct: 405 YGLAIKSSL------SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAH 458
Query: 187 XXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTH 246
E E L+LF M SR P+E T +++ AC+ G+L G+ H
Sbjct: 459 ------------EQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIH 505
Query: 247 CYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
++++ + N VG +L+DMYSKCG + A ++ + R
Sbjct: 506 SSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQR 546
Score = 76.6 bits (187), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 17/287 (5%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
ILK+ + Q+H ++ G S LL + +K +L +F IP
Sbjct: 186 ILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKN 245
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
++ +I+ ++ + LA + + S + S+ ++C + G
Sbjct: 246 SVSWSAIIAGCV-QNNLLSLALKFFKEMQKVNAGVSQSI-YASVLRSCAALSE-LRLGGQ 302
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LHAH LK + D V+ + L+ YAK + ++ LFD + ++N ++
Sbjct: 303 LHAHALKS-DFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGY---- 357
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
+ +AL LF + S +E++L + AC+ + LS+G+ + +
Sbjct: 358 --------SQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAI 409
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
+++L L+ V A +DMY KC L A ++FD++ RD +NA+I
Sbjct: 410 KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIA 456
Score = 67.8 bits (164), Expect = 9e-12, Method: Composition-based stats.
Identities = 53/227 (23%), Positives = 110/227 (48%), Gaps = 20/227 (8%)
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+N++IS + Q A L+ R++ + P+ FT+ ++ C G +HA
Sbjct: 571 WNSIISGYVM-KEQSEDAQMLFTRMM-EMGITPDKFTYATVLDTCANLAS-AGLGKQIHA 627
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
V+K E D ++ ++L++ Y+K G L SR +F++ D TWN ++
Sbjct: 628 QVIK-KELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGE 686
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNN 253
EA+ LF M + +PN VT ++++ AC+++G + +G+ + Y+++ +
Sbjct: 687 ------------EAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGL-EYFYMMKRD 733
Query: 254 LKLNRFVG--TALVDMYSKCGCLNLACQLFDQLT-DRDTFCYNAMIG 297
L+ + + +VD+ K G + A +L ++ + D + ++G
Sbjct: 734 YGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 780
>AT3G14330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4779688-4782451 REVERSE
LENGTH=710
Length = 710
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Query: 104 LQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCV 163
++P +F+ KAC + G +HA ++K E D V LL Y + G
Sbjct: 232 IEPGNFSISVALKACVDLKD-LRVGRGIHAQIVKRKEK-VDQVVYNVLLKLYMESGLFDD 289
Query: 164 SRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNE 223
+R +FD +SE ++ TWN+L+ E LF MQ +
Sbjct: 290 ARKVFDGMSERNVVTWNSLISVLSKKVRVH------------EMFNLFRKMQEEMIGFSW 337
Query: 224 VTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQ 283
TL ++ ACS + AL G H +L++ K + + +L+DMY KCG + + ++FD
Sbjct: 338 ATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDV 397
Query: 284 LTDRDTFCYNAMI 296
+ +D +N M+
Sbjct: 398 MLTKDLASWNIML 410
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 33/287 (11%)
Query: 9 NHPILKLLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTI--SSKLASTYALTIF 63
N I L+ C L L+ +HAQ++ + + LL + S L A +F
Sbjct: 236 NFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDD-ARKVF 294
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGH 123
+ V +N+LIS S ++H F+L+ R + + + + T ++ AC
Sbjct: 295 DGMSERNVVTWNSLISVL-SKKVRVHEMFNLF-RKMQEEMIGFSWATLTTILPACSRVAA 352
Query: 124 WFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
G +HA +LK E P D + SL++ Y K G + SR +FD + DLA+WN +L
Sbjct: 353 LLT-GKEIHAQILKSKEKP-DVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIML 410
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
E + LF M S P+ +T VAL+S CS+ G G+
Sbjct: 411 NCYAINGNIE------------EVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGL 458
Query: 244 WTHCYLLRNNLKLNRFVGTA------LVDMYSKCGCLNLACQLFDQL 284
L +K V A LVD+ + G + A ++ + +
Sbjct: 459 -----SLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETM 500
>AT1G56690.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:21253817-21255931 FORWARD
LENGTH=704
Length = 704
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 28/240 (11%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A IF + V + T+I+ + ++++ +A L+ ++ KT ++ S+
Sbjct: 191 ARLIFDEMRERNVVTWTTMITGY-RQNNRVDVARKLFE-VMPEKT----EVSWTSMLLGY 244
Query: 119 CGSGHWFQYGPPLHAHVLKFLE--PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDL 176
SG +F E P +++ + + G + +R +FD + + D
Sbjct: 245 TLSGR--------IEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDN 296
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
ATW ++ E LEAL LF MQ RP+ +L++++S C+ L
Sbjct: 297 ATWRGMIKA------------YERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATL 344
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L G H +L+R + +V + L+ MY KCG L A +FD+ + +D +N++I
Sbjct: 345 ASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSII 404
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 118/251 (47%), Gaps = 34/251 (13%)
Query: 57 TYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFK 116
+ A +F + + + +I ++ ++ A L+ + + + ++P +FPSL
Sbjct: 282 SKARRVFDLMEDRDNATWRGMIKAYERKGFELE-ALDLFAQ-MQKQGVRP---SFPSLIS 336
Query: 117 --ACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP 174
+ C + QYG +HAH+++ + D +V + L+ Y K G L ++ +FD+ S
Sbjct: 337 ILSVCATLASLQYGRQVHAHLVR-CQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSK 395
Query: 175 DLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACS 234
D+ WN+++ L EAL +F +M S PN+VTL+A+++ACS
Sbjct: 396 DIIMWNSIISGYASH------------GLGEEALKIFHEMPSSGTMPNKVTLIAILTACS 443
Query: 235 NLGALSQGVWTHCYLLRNNLKLNRFVGTA-------LVDMYSKCGCLNLACQLFDQLTDR 287
G L +G+ + ++F T VDM + G ++ A +L + +T +
Sbjct: 444 YAGKLEEGLEIFESM------ESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIK 497
Query: 288 -DTFCYNAMIG 297
D + A++G
Sbjct: 498 PDATVWGALLG 508
>AT2G21090.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:9045695-9047488 REVERSE
LENGTH=597
Length = 597
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 132/296 (44%), Gaps = 22/296 (7%)
Query: 5 NPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFS 64
N + + I+ KC + + K+ +M + + T +S + A A +F
Sbjct: 213 NVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEA---AEKLFC 269
Query: 65 SIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHW 124
+P + LI+ + S + A L+ +++A ++P FTF S A
Sbjct: 270 EMPEKNPVSWTALIAGYVRQGSG-NRALDLFRKMIA-LGVKPEQFTFSSCLCASASIAS- 326
Query: 125 FQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP-DLATWNTLL 183
++G +H ++++ P + V +SL++ Y+K G L S +F + D WNT++
Sbjct: 327 LRHGKEIHGYMIRTNVRP-NAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMI 385
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
L L +AL + DM R +PN TLV +++ACS+ G + +G+
Sbjct: 386 SA------------LAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGL 433
Query: 244 -WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLT-DRDTFCYNAMIG 297
W +++ + ++ L+D+ + GC + +++ + D +NA++G
Sbjct: 434 RWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILG 489
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 16/198 (8%)
Query: 101 HKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY--DHFVQASLLNFYAKY 158
H+ L+ F P+ + G + + G P+ A K + + + + ++++ Y K
Sbjct: 69 HRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDA--CKVFDQMHLRNLYSWNNMVSGYVKS 126
Query: 159 GRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSR 218
G L +R +FD + E D+ +WNT++ +D +L EAL+ + + + S
Sbjct: 127 GMLVRARVVFDSMPERDVVSWNTMVIGYA-----------QDGNLH-EALWFYKEFRRSG 174
Query: 219 RRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLAC 278
+ NE + L++AC L H +L N + +++D Y+KCG + A
Sbjct: 175 IKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAK 234
Query: 279 QLFDQLTDRDTFCYNAMI 296
+ FD++T +D + +I
Sbjct: 235 RCFDEMTVKDIHIWTTLI 252
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKL-NRF 259
A+LS L Q R P ++ L +L+ C + +L QG W H +L K N
Sbjct: 25 AELSQAVSRLESLTQQGIRLPFDL-LASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTL 83
Query: 260 VGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ L+ MY KCG AC++FDQ+ R+ + +N M+
Sbjct: 84 LSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMV 120
>AT3G18840.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:6496198-6498234 FORWARD
LENGTH=678
Length = 678
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 18/209 (8%)
Query: 88 IHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFV 147
+ + ++ R+L + + N F + C G+ +Y AH+L Y
Sbjct: 276 LKIGKEVHARVLKNGSY-SNKFVSSGIVDVYCKCGN-MKYAES--AHLLYGFGNLYS--- 328
Query: 148 QASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEA 207
+S++ Y+ G++ ++ LFD +SE +L W + L D LE
Sbjct: 329 ASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLN---------LRQPDSVLEL 379
Query: 208 LYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDM 267
F + + P+ + +V+++ ACS + G H + LR + +++ + TA VDM
Sbjct: 380 ARAFIANETNT--PDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDM 437
Query: 268 YSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
YSKCG + A ++FD +RDT YNAMI
Sbjct: 438 YSKCGNVEYAERIFDSSFERDTVMYNAMI 466
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 119/307 (38%), Gaps = 48/307 (15%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLTTGL---------ALHTYCL---------SHLL---- 48
+L +L SL K+VHA++L G + YC +HLL
Sbjct: 265 AVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFG 324
Query: 49 ----------TISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRI 98
SS+ A +F S+ + ++ + + + Q L
Sbjct: 325 NLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYL-NLRQPDSVLELARAF 383
Query: 99 LAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKY 158
+A++T P+S S+ AC + + G +H H L+ D + + ++ Y+K
Sbjct: 384 IANETNTPDSLVMVSVLGACSLQA-YMEPGKEIHGHSLR-TGILMDKKLVTAFVDMYSKC 441
Query: 159 GRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSR 218
G + + +FD E D +N ++ ++ F DM
Sbjct: 442 GNVEYAERIFDSSFERDTVMYNAMIAGCAHHGH------------EAKSFQHFEDMTEGG 489
Query: 219 RRPNEVTLVALISACSNLGALSQGV-WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLA 277
+P+E+T +AL+SAC + G + +G + + N+ T ++D+Y K L+ A
Sbjct: 490 FKPDEITFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKA 549
Query: 278 CQLFDQL 284
+L + +
Sbjct: 550 IELMEGI 556
>AT5G37570.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:14924494-14926146 REVERSE
LENGTH=550
Length = 550
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 119/287 (41%), Gaps = 26/287 (9%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
++K+ + VH +L G + + K + A +F +P
Sbjct: 116 VMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERN 175
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ L+ ++ S ++ A S+++ ++ + L + L K+ G
Sbjct: 176 AVSWTALVVAYVK-SGELEEAKSMFD-LMPERNLGSWNALVDGLVKS----------GDL 223
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
++A L P D S+++ YAK G + +R LF++ D+ W+ L+
Sbjct: 224 VNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNG 283
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL- 249
EA +F +M +P+E +V L+SACS +G YL
Sbjct: 284 QPN------------EAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLH 331
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
R N + +V AL+DM +KCG ++ A +LF+++ RD Y +M+
Sbjct: 332 QRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMM 378
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 124/295 (42%), Gaps = 60/295 (20%)
Query: 8 FNHPIL----KLLQKCHSLNTLKQVHAQMLTTGLALHT--YCLSHLLTISSKLASTYALT 61
+HP L L + C S L Q+HA+++ GL + + SS + +Y+ +
Sbjct: 5 LSHPSLLSLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSS 64
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F +P+P +L+N LI + S+ S+ R++ +P+ +TFP + K C +
Sbjct: 65 VFERVPSPGTYLWNHLIKGY-SNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNN 123
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
G + G +H VL+ + D V S ++FY K L +R +F ++ E + +W
Sbjct: 124 GQ-VRVGSSVHGLVLR-IGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTA 181
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
L+ ++ +L EA +F D+ R NLG+
Sbjct: 182 LV-----------VAYVKSGELE-EAKSMF-DLMPER----------------NLGS--- 209
Query: 242 GVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
W ALVD K G L A +LFD++ RD Y +MI
Sbjct: 210 --W-----------------NALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMI 245
>AT1G17630.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:6064525-6066720 FORWARD
LENGTH=731
Length = 731
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 138/352 (39%), Gaps = 78/352 (22%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPT 70
+L+ C L + H Q++ GL + + ++ LLT+ K A +F +P
Sbjct: 164 ILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRN 223
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSL---------------- 114
+N +I F S A ++ + + +P+ T+ S+
Sbjct: 224 RMSWNVMIKGF-SQEYDCESAVKIF-EWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKY 281
Query: 115 ------------------FKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFV--QASLLNF 154
F + C +H +V+K ++ ++ + +L++
Sbjct: 282 FHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIK---GGFEEYLPSRNALIHV 338
Query: 155 YAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXX----XXLED---------- 200
Y K G++ + LF QI + +WN+L+ LE+
Sbjct: 339 YGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKAN 398
Query: 201 ----------------ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
D SLE F MQ S+ N VT+ ++S C+ L AL+ G
Sbjct: 399 VVTWTSVIKGCNVQGRGDDSLE---YFRQMQFSKVLANSVTICCILSICAELPALNLGRE 455
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H +++R ++ N V ALV+MY+KCG L+ +F+ + D+D +N++I
Sbjct: 456 IHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSII 507
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 126/311 (40%), Gaps = 53/311 (17%)
Query: 20 HSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLI 78
+L+ ++VH ++ G + + L+ + K A +F I N + +N+LI
Sbjct: 308 EALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLI 367
Query: 79 SSFTSHSSQIHLAFSLYNRILAHK---TLQPNSFTFPSLFKACCGSG------HWFQY-- 127
+SF + ++ A SL++ + ++ N T+ S+ K C G +F+
Sbjct: 368 TSFVD-AGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQ 426
Query: 128 --------------------------GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRL 161
G +H HV++ + VQ +L+N YAK G L
Sbjct: 427 FSKVLANSVTICCILSICAELPALNLGREIHGHVIR-TSMSENILVQNALVNMYAKCGLL 485
Query: 162 CVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRP 221
+F+ I + DL +WN+++ + +AL +F M S P
Sbjct: 486 SEGSLVFEAIRDKDLISWNSIIKGYGMH------------GFAEKALSMFDRMISSGFHP 533
Query: 222 NEVTLVALISACSNLGALSQGVWT-HCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
+ + LVA++SACS+ G + +G + R L+ + +VD+ + G L A ++
Sbjct: 534 DGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEI 593
Query: 281 FDQLTDRDTFC 291
+ C
Sbjct: 594 VKNMPMEPKVC 604
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 132/334 (39%), Gaps = 70/334 (20%)
Query: 8 FNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLS-HLLTISSKLA---------ST 57
F+H LL C + +QVHAQ+L + + L+ +L+++ ++L T
Sbjct: 59 FDH----LLGLCLTAQQCRQVHAQVLLSDFIFRSGSLAANLISVYARLGLLLDARNVFET 114
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
+L + S + L+N+++ + SH + A LY R + + L + + P + +A
Sbjct: 115 VSLVLLSDLR-----LWNSILKANVSHGLYEN-ALELY-RGMRQRGLTGDGYILPLILRA 167
Query: 118 CCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
C G F H V++ H V LL Y K GR+ + LF ++ +
Sbjct: 168 CRYLGR-FGLCRAFHTQVIQIGLKENLHVVN-ELLTLYPKAGRMGDAYNLFVEMPVRNRM 225
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVT------------ 225
+WN ++ ++ D A+ +F MQ +P+EVT
Sbjct: 226 SWNVMIKGFS-----------QEYDCE-SAVKIFEWMQREEFKPDEVTWTSVLSCHSQCG 273
Query: 226 -----------------------LVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
L S C+ L ALS H Y+++ +
Sbjct: 274 KFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRN 333
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
AL+ +Y K G + A LF Q+ ++ +N++I
Sbjct: 334 ALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLI 367
>AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3035443-3037560 FORWARD LENGTH=705
Length = 705
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 37/267 (13%)
Query: 43 CLSHLLTISSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHK 102
C + + + K A +F S+ + T+I + ++ A L+ IL K
Sbjct: 268 CNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELE-ALDLF--ILMQK 324
Query: 103 TLQPNSFTFPSLFK--ACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGR 160
Q TFP+L + C S +G +HA +++ + D +V + L+ Y K G
Sbjct: 325 --QGVRPTFPTLISILSVCASLASLHHGKQVHAQLVR-CQFDVDVYVASVLMTMYIKCGE 381
Query: 161 LCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMS-RR 219
L S+ +FD+ D+ WN+++ L EAL +FC+M +S
Sbjct: 382 LVKSKLIFDRFPSKDIIMWNSIISGYASH------------GLGEEALKVFCEMPLSGST 429
Query: 220 RPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA--------LVDMYSKC 271
+PNEVT VA +SACS G + +G L+ + G +VDM +
Sbjct: 430 KPNEVTFVATLSACSYAGMVEEG-------LKIYESMESVFGVKPITAHYACMVDMLGRA 482
Query: 272 GCLNLACQLFDQLT-DRDTFCYNAMIG 297
G N A ++ D +T + D + +++G
Sbjct: 483 GRFNEAMEMIDSMTVEPDAAVWGSLLG 509
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 12 ILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIP 67
++ +L C SL +L KQVHAQ++ + Y S L+T+ K + IF P
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFP 393
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
+ + ++N++IS + SH A ++ + + +PN TF + AC +G +
Sbjct: 394 SKDIIMWNSIISGYASHGLG-EEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGM-VEE 451
Query: 128 GPPLHAHVLKF--LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS-EPDLATWNTLL 183
G ++ + ++P H+ A +++ + GR + + D ++ EPD A W +LL
Sbjct: 452 GLKIYESMESVFGVKPITAHY--ACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLL 508
>AT4G01030.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:448336-450642 REVERSE LENGTH=768
Length = 768
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 126/294 (42%), Gaps = 29/294 (9%)
Query: 28 VHAQMLTTGLA-LHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHS 85
+H ++ GL T +S + + S +A +F +P +N ++ S
Sbjct: 9 IHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVM-VNLRS 67
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
A L+ R + + T L + C F G +H +VL+ L +
Sbjct: 68 GNWEKAVELF-REMQFSGAKAYDSTMVKLLQVCSNK-EGFAEGRQIHGYVLR-LGLESNV 124
Query: 146 FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA---- 201
+ SL+ Y++ G+L +SR +F+ + + +L++WN++L L D
Sbjct: 125 SMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEIC 184
Query: 202 -------------------DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
LS +A+ + MQ++ +P+ ++ +L+ A + G L G
Sbjct: 185 GLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLG 244
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H Y+LRN L + +V T L+DMY K G L A +FD + ++ +N+++
Sbjct: 245 KAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLV 298
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 150/385 (38%), Gaps = 99/385 (25%)
Query: 8 FNHPILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIF 63
++ ++KLLQ C + +Q+H +L GL + + L+ + S+ + +F
Sbjct: 88 YDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVF 147
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSL---------------YNRILAH------- 101
+S+ + + +N+++SS+T + A L +N +L+
Sbjct: 148 NSMKDRNLSSWNSILSSYTKLG-YVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLS 206
Query: 102 ------------KTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQA 149
L+P++ + SL +A GH + G +H ++L+ + YD +V+
Sbjct: 207 KDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGH-LKLGKAIHGYILRN-QLWYDVYVET 264
Query: 150 SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX----XXXXXXXXXXLEDADLS- 204
+L++ Y K G L +R +FD + ++ WN+L+ +E +
Sbjct: 265 TLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKP 324
Query: 205 ------------------LEALYLFCDMQMSRRRPNEVTLVALISACSN----------- 235
+AL + M+ PN V+ A+ S CS
Sbjct: 325 DAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVF 384
Query: 236 ---------------------LGALS---QGVWTHCYLLRNNLKLNRFVGTALVDMYSKC 271
LG LS G H + LR NL + +V TALVDMY K
Sbjct: 385 IKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKS 444
Query: 272 GCLNLACQLFDQLTDRDTFCYNAMI 296
G L A ++F + ++ +N M+
Sbjct: 445 GDLQSAIEIFWGIKNKSLASWNCML 469
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G +H ++K D V ++ + FY + L + LFD++ + D WN ++
Sbjct: 6 GLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN- 64
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
L + +A+ LF +MQ S + + T+V L+ CSN ++G H
Sbjct: 65 ----------LRSGNWE-KAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHG 113
Query: 248 YLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
Y+LR L+ N + +L+ MYS+ G L L+ ++F+ + DR+ +N+++
Sbjct: 114 YVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSIL 162
>AT1G13410.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4601526-4603174 FORWARD
LENGTH=474
Length = 474
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 27/182 (14%)
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
L P D + ++++ Y + G + +R LFDQ+ D+ +WNT+L +
Sbjct: 84 LSPERDIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERV 143
Query: 199 EDADLSLEALYLF-------------CDMQMSRRR--------PNEVTLVALISACSNLG 237
D D+ ++ + ++ S +R PN+ T+ ++SAC+ LG
Sbjct: 144 FD-DMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLG 202
Query: 238 ALSQGVWTHCY---LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNA 294
A G W H Y L N + +N V AL+DMY KCG + +A ++F + RD +N
Sbjct: 203 AFDFGKWVHKYGETLGYNKVDVN--VKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNT 260
Query: 295 MI 296
MI
Sbjct: 261 MI 262
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS 121
+F +P VF +N LI + + + ++ + R++ ++ PN T + AC
Sbjct: 143 VFDDMPERNVFSWNGLIKGY-AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKL 201
Query: 122 GHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
G F +G +H + D V+ +L++ Y K G + ++ +F I DL +WNT
Sbjct: 202 GA-FDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNT 260
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
++ EAL LF +M+ S P++VT V ++ AC ++G +
Sbjct: 261 MINGLAAHGH------------GTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVED 308
Query: 242 GV 243
G+
Sbjct: 309 GL 310
>AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:15884236-15886368 REVERSE
LENGTH=710
Length = 710
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 21/234 (8%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNPTV 71
L+L LN QVH++M+ G L+ + K YA +F +
Sbjct: 244 LRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNI 303
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPL 131
FL T++ ++ S A +L+++ + K + PN +TF L + + G L
Sbjct: 304 FLNTTIMDAYFQDKS-FEEALNLFSK-MDTKEVPPNEYTFAILLNSIA-ELSLLKQGDLL 360
Query: 132 HAHVLKFLEPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
H VLK Y + V +L+N YAK G + +R F ++ D+ TWNT++
Sbjct: 361 HGLVLK---SGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHH 417
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
L EAL F M + PN +T + ++ ACS++G + QG+
Sbjct: 418 ------------GLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGL 459
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 131 LHAHVLKFLEPPYDHFVQA--SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H+ +++F ++ V+A +L+N Y K G++ ++ +FD ++ T++
Sbjct: 259 VHSRMVRF---GFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAY-- 313
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
+D EAL LF M PNE T L+++ + L L QG H
Sbjct: 314 ---------FQDKSFE-EALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGL 363
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L++ + + VG ALV+MY+K G + A + F +T RD +N MI
Sbjct: 364 VLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMI 411
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 16/175 (9%)
Query: 113 SLFKACCGSGHWFQYGPPLHAHVLKFLEPPY--DHFVQASLLNFYAKYGRLCVSRCLFDQ 170
L K C S + + G +HAH++ + D + SL+N Y K +R LFD
Sbjct: 36 ELLKVCANSS-YLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDL 94
Query: 171 ISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMS-RRRPNEVTLVAL 229
+ E ++ +W ++ +++ E L LF M S RPNE +
Sbjct: 95 MPERNVVSWCAMMKG------------YQNSGFDFEVLKLFKSMFFSGESRPNEFVATVV 142
Query: 230 ISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
+CSN G + +G H L+ L + FV LV MYS C A ++ D L
Sbjct: 143 FKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDL 197
>AT3G20730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:7247095-7248878 FORWARD
LENGTH=564
Length = 564
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 151 LLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYL 210
L++ Y K G + +R LFD+IS+ D+ +W ++ +AL L
Sbjct: 53 LIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISR------------FSRCGYHPDALLL 100
Query: 211 FCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSK 270
F +M + N+ T +++ +C +LG L +G+ H + + N N V +AL+ +Y++
Sbjct: 101 FKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYAR 160
Query: 271 CGCLNLACQLFDQLTDRDTFCYNAMI 296
CG + A FD + +RD +NAMI
Sbjct: 161 CGKMEEARLQFDSMKERDLVSWNAMI 186
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 133/287 (46%), Gaps = 20/287 (6%)
Query: 15 LLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTI-FSSIPNPT 70
+L+ C L LK Q+H + A + S LL++ ++ + F S+
Sbjct: 119 VLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERD 178
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
+ +N +I +T+++ +FSL+ +L +P+ FTF SL +A +
Sbjct: 179 LVSWNAMIDGYTANACA-DTSFSLFQLMLTEGK-KPDCFTFGSLLRASIVV-KCLEIVSE 235
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
LH +K ++ SL+N Y K G L + L + + DL + L+
Sbjct: 236 LHGLAIKLGFGRSSALIR-SLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFS--- 291
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL 250
+ + + +A +F DM + + +EV + +++ C+ + +++ G H + L
Sbjct: 292 --------QQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFAL 343
Query: 251 RNN-LKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ ++ + +G +L+DMY+K G + A F+++ ++D + ++I
Sbjct: 344 KSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLI 390
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 20/288 (6%)
Query: 13 LKLLQKCHSLNTLKQ---VHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPN 68
LK L+ C N KQ +H +T G + L+ + K +A +F I
Sbjct: 16 LKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRISK 75
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
V + +IS F+ H L + + + ++ N FT+ S+ K+C G + G
Sbjct: 76 RDVVSWTAMISRFSR--CGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLG-CLKEG 132
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H V K + V+++LL+ YA+ G++ +R FD + E DL +WN ++
Sbjct: 133 MQIHGSVEKG-NCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTA 191
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
AD S LF M ++P+ T +L+ A + L H
Sbjct: 192 NAC---------ADTSFS---LFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGL 239
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ + + +LV+ Y KCG L A +L + RD A+I
Sbjct: 240 AIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALI 287
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 115/269 (42%), Gaps = 18/269 (6%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFL 73
++ KC L + ++H + G + + L+ K S A + +
Sbjct: 225 IVVKC--LEIVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLS 282
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
LI+ F+ ++ AF ++ ++ KT + + S+ K C G +H
Sbjct: 283 CTALITGFSQQNNCTSDAFDIFKDMIRMKT-KMDEVVVSSMLKICTTIAS-VTIGRQIHG 340
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
LK + +D + SL++ YAK G + + F+++ E D+ +W +L+
Sbjct: 341 FALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFE 400
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLL-RN 252
+A+ L+ M+ R +PN+VT ++L+SACS+ G G + ++ ++
Sbjct: 401 ------------KAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINKH 448
Query: 253 NLKLNRFVGTALVDMYSKCGCLNLACQLF 281
++ + ++DM ++ G L A L
Sbjct: 449 GIEAREEHLSCIIDMLARSGYLEEAYALI 477
>AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:4246954-4249212 REVERSE
LENGTH=752
Length = 752
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 116/277 (41%), Gaps = 21/277 (7%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+LK LN KQ+HA + GL + L+ K +S A F I P
Sbjct: 291 VLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPN 350
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
++ +IS + SQ A + + + NSFT+ S+F+AC G
Sbjct: 351 DVSWSAIISGYC-QMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLAD-CNIGGQ 408
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXX 190
+HA +K + +++L+ Y+K G L + +F+ + PD+ W +
Sbjct: 409 VHADAIK-RSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYG 467
Query: 191 XXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC--- 247
EAL LF M +PN VT +A+++ACS+ G + QG HC
Sbjct: 468 NAS------------EALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQG--KHCLDT 513
Query: 248 YLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
L + N+ ++D+Y++ G L+ A + +
Sbjct: 514 MLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNM 550
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 20/288 (6%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPT 70
+LK L +L+ +Q+HA ++ GL +T + ++ + K A +F +
Sbjct: 190 LLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKK 249
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
L+ +T + + A L+ ++ + ++ +SF F + KAC S G
Sbjct: 250 PVACTGLMVGYT-QAGRARDALKLFVDLVT-EGVEWDSFVFSVVLKAC-ASLEELNLGKQ 306
Query: 131 LHAHVLKF-LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXX 189
+HA V K LE V L++FY K + F +I EP+ +W+ ++
Sbjct: 307 IHACVAKLGLESEVS--VGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQM 364
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRP-NEVTLVALISACSNLGALSQGVWTHCY 248
EA+ F ++ N T ++ ACS L + G H
Sbjct: 365 SQFE------------EAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHAD 412
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
++ +L +++ +AL+ MYSKCGCL+ A ++F+ + + D + A I
Sbjct: 413 AIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFI 460
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)
Query: 107 NSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRC 166
+S+++ LF+AC +G LH + +E P +Q +L Y + L +
Sbjct: 82 SSYSYQCLFEAC-RELRSLSHGRLLHDRMRMGIENP-SVLLQNCVLQMYCECRSLEDADK 139
Query: 167 LFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTL 226
LFD++SE + + T++ + + +A+ LF M S +P
Sbjct: 140 LFDEMSELNAVSRTTMISAYA------------EQGILDKAVGLFSGMLASGDKPPSSMY 187
Query: 227 VALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL-T 285
L+ + N AL G H +++R L N + T +V+MY KCG L A ++FDQ+
Sbjct: 188 TTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAV 247
Query: 286 DRDTFCYNAMIG 297
+ C M+G
Sbjct: 248 KKPVACTGLMVG 259
>AT3G49142.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18215788-18217848 REVERSE
LENGTH=686
Length = 686
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 167 LFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTL 226
+F ++ + L +WN ++ +++A + +EA+ L+ M+ P+ V++
Sbjct: 265 MFFKMGKKSLVSWNVMIGVY-----------MKNA-MPVEAVELYSRMEADGFEPDAVSI 312
Query: 227 VALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTD 286
+++ AC + ALS G H Y+ R L N + AL+DMY+KCGCL A +F+ +
Sbjct: 313 TSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKS 372
Query: 287 RDTFCYNAMI 296
RD + AMI
Sbjct: 373 RDVVSWTAMI 382
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 21 SLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLIS 79
+ TL+ VH++++ L ++ L+ + L A +F IP V + N +I
Sbjct: 54 DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113
Query: 80 SFTSHS--SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK 137
S+ ++ + F + ++P+ +TFP + KAC SG G +H K
Sbjct: 114 SYVNNGFYGEGVKVFG----TMCGCNVRPDHYTFPCVLKACSCSGT-IVIGRKIHGSATK 168
Query: 138 FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
+ FV L++ Y K G L +R + D++S D+ +WN+L+
Sbjct: 169 -VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLV 213
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 113/244 (46%), Gaps = 22/244 (9%)
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
Y +F + ++ +N +I + ++ + A LY+R+ A +P++ + S+ A
Sbjct: 261 YVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE-AVELYSRMEAD-GFEPDAVSITSVLPA 318
Query: 118 CCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
C G G +H ++ + P + ++ +L++ YAK G L +R +F+ + D+
Sbjct: 319 C-GDTSALSLGKKIHGYIERKKLIP-NLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG 237
+W ++ + +A+ LF +Q S P+ + V ++ACS+ G
Sbjct: 377 SWTAMISAYGF------------SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAG 424
Query: 238 ALSQGVWTHCY-LLRNNLKLN-RFVGTA-LVDMYSKCGCLNLACQLFDQLT-DRDTFCYN 293
L +G C+ L+ ++ K+ R A +VD+ + G + A + ++ + + +
Sbjct: 425 LLEEG--RSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWG 482
Query: 294 AMIG 297
A++G
Sbjct: 483 ALLG 486
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 151 LLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYL 210
L+ YA + +R +FD+I E ++ N ++ + E + +
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYV------------NNGFYGEGVKV 127
Query: 211 FCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSK 270
F M RP+ T ++ ACS G + G H + L FVG LV MY K
Sbjct: 128 FGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187
Query: 271 CGCLNLACQLFDQLTDRDTFCYNAMI 296
CG L+ A + D+++ RD +N+++
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLV 213
>AT5G47460.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:19252463-19254193 REVERSE
LENGTH=576
Length = 576
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 13/148 (8%)
Query: 150 SLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALY 209
SL+ FY L + +FD++ +PD+ +WN+L+ E +
Sbjct: 95 SLMRFYKTSDSLEDAHKVFDEMPDPDVISWNSLVSGYVQSGRFQ------------EGIC 142
Query: 210 LFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNL-KLNRFVGTALVDMY 268
LF ++ S PNE + A ++AC+ L G H L++ L K N VG L+DMY
Sbjct: 143 LFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVVVGNCLIDMY 202
Query: 269 SKCGCLNLACQLFDQLTDRDTFCYNAMI 296
KCG ++ A +F + ++DT +NA++
Sbjct: 203 GKCGFMDDAVLVFQHMEEKDTVSWNAIV 230
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 118/320 (36%), Gaps = 65/320 (20%)
Query: 39 LHTYCLSHLLTISSKLASTY------------ALTIFSSIPNPTVFLYNTLISSFTSHSS 86
LH Y H +++L+++ A +F +P+P V +N+L+S + S
Sbjct: 77 LHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVISWNSLVSGYV-QSG 135
Query: 87 QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHF 146
+ L+ L + PN F+F + A C H G +H+ ++K +
Sbjct: 136 RFQEGICLFLE-LHRSDVFPNEFSFTAAL-AACARLHLSPLGACIHSKLVKLGLEKGNVV 193
Query: 147 VQASLLNFYAK-------------------------------YGRLCVSRCLFDQISEPD 175
V L++ Y K G+L + F Q+ PD
Sbjct: 194 VGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVASCSRNGKLELGLWFFHQMPNPD 253
Query: 176 LATWNTLLXXXXXXXXXXXXXXL-------------------EDADLSLEALYLFCDMQM 216
T+N L+ + +++ S EA F M
Sbjct: 254 TVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTILTGYVNSEKSGEATEFFTKMHS 313
Query: 217 SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNL 276
S R +E +L +++A + L + G H + L V +AL+DMYSKCG L
Sbjct: 314 SGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLDSRVVVASALIDMYSKCGMLKH 373
Query: 277 ACQLFDQLTDRDTFCYNAMI 296
A +F + ++ +N MI
Sbjct: 374 AELMFWTMPRKNLIVWNEMI 393
>AT5G09950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:3102877-3105864 REVERSE
LENGTH=995
Length = 995
Score = 74.3 bits (181), Expect = 1e-13, Method: Composition-based stats.
Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 36/298 (12%)
Query: 12 ILKLLQKCHSLNTLK---QVHAQMLTTGLALHTYCLSHLLTISSKLASTYALT------- 61
++ L C SL K Q+H + L G+ L+ +++S+ L + YA T
Sbjct: 418 LISSLSSCASLKWAKLGQQIHGESLKLGIDLN-------VSVSNALMTLYAETGYLNECR 470
Query: 62 -IFSSIPNPTVFLYNTLISSFT-SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC 119
IFSS+P +N++I + S S N A + L +F+ +
Sbjct: 471 KIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSL 530
Query: 120 GSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP-DLAT 178
G + G +H LK + + +L+ Y K G + +F +++E D T
Sbjct: 531 SFG---ELGKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVT 586
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WN+++ +L +AL L M + +R + ++SA +++
Sbjct: 587 WNSMISGYIHN------------ELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVAT 634
Query: 239 LSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L +G+ H +R L+ + VG+ALVDMYSKCG L+ A + F+ + R+++ +N+MI
Sbjct: 635 LERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMI 692
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/276 (21%), Positives = 119/276 (43%), Gaps = 16/276 (5%)
Query: 25 LKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTS 83
L+Q+ + +GL + S L++ +K S +YA +F+ + N L+
Sbjct: 227 LEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVR 286
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFT--FPSLFKACCGSGHWFQYGPPLHAHVLKFLEP 141
A L+ + + + P S+ S + + G +H HV+
Sbjct: 287 QKWG-EEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLV 345
Query: 142 PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
+ + L+N YAK G + +R +F +++ D +WN+++ L+
Sbjct: 346 DFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITG------------LDQN 393
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
+EA+ + M+ P TL++ +S+C++L G H L+ + LN V
Sbjct: 394 GCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVS 453
Query: 262 TALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMIG 297
AL+ +Y++ G LN ++F + + D +N++IG
Sbjct: 454 NALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIG 489
>AT4G32430.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:15652982-15655273 FORWARD
LENGTH=763
Length = 763
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 121/273 (44%), Gaps = 25/273 (9%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFLYNTLISSFTSHS 85
Q+ + ++ TGL + +T+ S+ S A +F + + +N+L+S +
Sbjct: 195 QLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEG 254
Query: 86 SQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDH 145
+ A ++ R + + ++ + +F S+ CC + +H +K Y+
Sbjct: 255 TFGFEAVVIF-RDMMREGVELDHVSFTSVITTCCHETD-LKLARQIHGLCIK---RGYES 309
Query: 146 FVQAS--LLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
++ L++ Y+K G L + +F Q+SE ++ +W T++
Sbjct: 310 LLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKD--------------- 354
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTA 263
+A+ +F +M+ PNEVT V LI+A + +G+ H ++ VG +
Sbjct: 355 --DAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS 412
Query: 264 LVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ +Y+K L A + F+ +T R+ +NAMI
Sbjct: 413 FITLYAKFEALEDAKKAFEDITFREIISWNAMI 445
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 125/286 (43%), Gaps = 33/286 (11%)
Query: 19 CHS--LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYAL-TIFSSIPNPTVFLYN 75
CH L +Q+H + G + L++ SK A+ ++F + V +
Sbjct: 287 CHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWT 346
Query: 76 TLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC-CGSGHWFQYGPPLHAH 134
T+ISS + I L + + PN TF L A C + G +H
Sbjct: 347 TMISSNKDDAVSIFLN-------MRFDGVYPNEVTFVGLINAVKCN--EQIKEGLKIHGL 397
Query: 135 VLK--FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXX 192
+K F+ P V S + YAK+ L ++ F+ I+ ++ +WN ++
Sbjct: 398 CIKTGFVSEPS---VGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISG------- 447
Query: 193 XXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALS--QGVWTHCYLL 250
S EAL +F + PNE T ++++A + +S QG H +LL
Sbjct: 448 -----FAQNGFSHEALKMFLSAA-AETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLL 501
Query: 251 RNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ L V +AL+DMY+K G ++ + ++F++++ ++ F + ++I
Sbjct: 502 KLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSII 547
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
Query: 147 VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLE 206
V +++ Y K GR + C+F+ + +PD+ +WNT+L +D +
Sbjct: 113 VSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTIL------------SGFDDNQI--- 157
Query: 207 ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
AL M+ + + T +S C G+ +++ L+ + VG + +
Sbjct: 158 ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFIT 217
Query: 267 MYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
MYS+ G A ++FD+++ +D +N+++
Sbjct: 218 MYSRSGSFRGARRVFDEMSFKDMISWNSLL 247
>AT4G02750.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:1221116-1223461 REVERSE
LENGTH=781
Length = 781
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 120/291 (41%), Gaps = 39/291 (13%)
Query: 7 IFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSI 66
+ I++ Q S+N V + TG A S K+ A +F
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQ-----------SGKIDE--ARQLFDES 276
Query: 67 PNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQ 126
P VF + ++S + + + A L++ K + N ++ ++ +
Sbjct: 277 PVQDVFTWTAMVSGYI-QNRMVEEARELFD-----KMPERNEVSWNAMLAG-------YV 323
Query: 127 YGPPLH-AHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
G + A L + P + +++ YA+ G++ ++ LFD++ + D +W ++
Sbjct: 324 QGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 383
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
+ S EAL LF M+ R N + + +S C+++ AL G
Sbjct: 384 YS------------QSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQL 431
Query: 246 HCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H L++ + FVG AL+ MY KCG + A LF ++ +D +N MI
Sbjct: 432 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI 482
>AT5G42450.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:16977297-16978850 FORWARD
LENGTH=517
Length = 517
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 27/249 (10%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
AL++F ++P +V +N +I F S + + A + + +L + PN TFP A
Sbjct: 178 ALSLFRAMPERSVVTWNAVIGGF-SQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAI 236
Query: 119 CG-SGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP--D 175
+ H G +HA +KFL ++ FV SL++FY+K G + S F+++ E +
Sbjct: 237 SNIASH--GAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDSLLAFNKLEEEQRN 294
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACS 234
+ +WN+++ EA+ +F M + + RPN VT++ ++ AC+
Sbjct: 295 IVSWNSMIWGYAHNGRGE------------EAVAMFEKMVKDTNLRPNNVTILGVLFACN 342
Query: 235 NLGALSQGVW-----THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLT-DRD 288
+ G + +G + Y N L+L + +VDM S+ G A +L + D
Sbjct: 343 HAGLIQEGYMYFNKAVNDYDDPNLLELEHY--ACMVDMLSRSGRFKEAEELIKSMPLDPG 400
Query: 289 TFCYNAMIG 297
+ A++G
Sbjct: 401 IGFWKALLG 409
>AT2G46050.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:18939262-18941034 FORWARD
LENGTH=590
Length = 590
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 24/289 (8%)
Query: 14 KLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVF 72
KL L+ +KQ H M+ G+ + + LL +K+ A +F +P +
Sbjct: 44 KLSASLDHLSDVKQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIV 103
Query: 73 LYNTLISSFTSHSS----QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
+N LI + HL F +RIL + + +F L + C S + + G
Sbjct: 104 TWNILIHGVIQRDGDTNHRAHLGFCYLSRIL-FTDVSLDHVSFMGLIRLCTDSTN-MKAG 161
Query: 129 PPLHAHVLK-FLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
LH ++K LE F SL++FY K G + +R +F+ + + DL WN L+
Sbjct: 162 IQLHCLMVKQGLESSC--FPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALVSSYV 219
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
D + L L +R R + T +L+SAC + QG H
Sbjct: 220 LNGMI---------DEAFGLLKLMGS-DKNRFRGDYFTFSSLLSACR----IEQGKQIHA 265
Query: 248 YLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L + + + + V TAL++MY+K L+ A + F+ + R+ +NAMI
Sbjct: 266 ILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVSWNAMI 314
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 35/293 (11%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFL 73
LL C + KQ+HA + + LL + +K + A F S+ V
Sbjct: 251 LLSACR-IEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVS 309
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
+N +I F + + + A L+ ++L + LQP+ TF S+ +C ++ + A
Sbjct: 310 WNAMIVGF-AQNGEGREAMRLFGQMLL-ENLQPDELTFASVLSSCAKFSAIWEI-KQVQA 366
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
V K + V SL++ Y++ G L + F I EPDL +W +++
Sbjct: 367 MVTKKGSADFLS-VANSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVI---------- 415
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNN 253
L + E+L +F M + + +P+++T + ++SACS+ G + +G LR
Sbjct: 416 --GALASHGFAEESLQMFESM-LQKLQPDKITFLEVLSACSHGGLVQEG-------LRCF 465
Query: 254 LKLNRFVG--------TALVDMYSKCGCLNLACQLFDQL-TDRDTFCYNAMIG 297
++ F T L+D+ + G ++ A + + + T+ T A G
Sbjct: 466 KRMTEFYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPTEPSTHALAAFTG 518
>AT1G71490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26933326-26935371 REVERSE
LENGTH=681
Length = 681
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 140/317 (44%), Gaps = 37/317 (11%)
Query: 10 HPILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLA---STYALTIF 63
H LL C + QVHA +++G+ H+ + L+T S ++
Sbjct: 44 HSAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIEN 103
Query: 64 SSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGH 123
S I +P +N LI+S+ + + + Y R+++ K ++P++FT+PS+ KAC G
Sbjct: 104 SDILHP--LPWNVLIASY-AKNELFEEVIAAYKRMVS-KGIRPDAFTYPSVLKAC-GETL 158
Query: 124 WFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLL 183
+G +H + + +V +L++ Y ++ + ++R LFD++ E D +WN ++
Sbjct: 159 DVAFGRVVHGSI-EVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVI 217
Query: 184 XXXXXXXXXXXXXXLED------ADLS-----------------LEALYLFCDMQMSRRR 220
L D ++S + AL L M+
Sbjct: 218 NCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTS 277
Query: 221 PNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQL 280
+ V ++ + ACS +GA+ G H + ++ V L+ MYSKC L A +
Sbjct: 278 LDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIV 337
Query: 281 FDQLTDRDTFC-YNAMI 296
F Q T+ ++ C +N++I
Sbjct: 338 FRQ-TEENSLCTWNSII 353
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 115 FKACCGSGHWFQYGPPLHAHVLKFLEPPYDHF--VQASLLNFYAKYGRLCVSRCLFDQIS 172
KAC G + G +H + YD V+ +L+ Y+K L + +F Q
Sbjct: 287 LKACSLIGA-IRLGKEIHGLAI---HSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTE 342
Query: 173 EPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISA 232
E L TWN+++ + S EA +L +M ++ +PN +TL +++
Sbjct: 343 ENSLCTWNSIISGYAQL------------NKSEEASHLLREMLVAGFQPNSITLASILPL 390
Query: 233 CSNLGALSQGVWTHCYLLRNN-LKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC 291
C+ + L G HCY+LR K + +LVD+Y+K G + A Q+ D ++ RD
Sbjct: 391 CARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVT 450
Query: 292 YNAMI 296
Y ++I
Sbjct: 451 YTSLI 455
>AT5G08490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:2745208-2747757 REVERSE
LENGTH=849
Length = 849
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 136/292 (46%), Gaps = 20/292 (6%)
Query: 11 PILKLLQKCHSLNTLKQVHAQMLT-TGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPN 68
P+ + K + + +Q+H+ ++ + L H + + L++ ++ A ++F+ + +
Sbjct: 232 PVCASMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGS 291
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
+ +N +I+ + S+ AF L++ ++ + P+S T S+ C G
Sbjct: 292 KDLVSWNVVIAGYASNCEWFK-AFQLFHNLVHKGDVSPDSVTIISILPVCAQLTD-LASG 349
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXX 188
+H+++L+ D V +L++FYA++G + F +S D+ +WN +L
Sbjct: 350 KEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAIL----- 404
Query: 189 XXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
D+ + L L + + VT+++L+ C N+ + + H Y
Sbjct: 405 -------DAFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGY 457
Query: 249 LLRNNL---KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFC-YNAMI 296
++ L + +G AL+D Y+KCG + A ++F L++R T YN+++
Sbjct: 458 SVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLL 509
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 127/301 (42%), Gaps = 43/301 (14%)
Query: 33 LTTGLALHTYCLSH------------LLTISSKLASTYALT-IFSSIPNPTVFLYNTLIS 79
L +G +H+Y L H L++ ++ T A FS + + +N ++
Sbjct: 346 LASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILD 405
Query: 80 SFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC---GSGHWFQ-YGPPLHAHV 135
+F Q F L ++ + +S T SL K C G G + +G + A +
Sbjct: 406 AFADSPKQFQ--FLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGL 463
Query: 136 LKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD-LATWNTLLXXXXXXXXXXX 194
L E P + +LL+ YAK G + + +F +SE L ++N+LL
Sbjct: 464 LHDEEEPK---LGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDD 520
Query: 195 XXXL----EDADLSL---------------EALYLFCDMQMSRRRPNEVTLVALISACSN 235
L DL+ EA+ +F ++Q RPN VT++ L+ C+
Sbjct: 521 AQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQ 580
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
L +L H Y++R L R GT L+D+Y+KCG L A +F RD + AM
Sbjct: 581 LASLHLVRQCHGYIIRGGLGDIRLKGT-LLDVYAKCGSLKHAYSVFQSDARRDLVMFTAM 639
Query: 296 I 296
+
Sbjct: 640 V 640
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 127/282 (45%), Gaps = 35/282 (12%)
Query: 33 LTTGLALH--TYCLSHLL--TISSKLASTYAL--------TIFSSIPNPTVFLYNTLISS 80
LT+G ALH + L H+ +S + + YA +F + + ++N +++
Sbjct: 37 LTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTG 96
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKF-L 139
+ + + F + + +P+S TF + C G + G +H++++K L
Sbjct: 97 LSVSCGRETMRF--FKAMHFADEPKPSSVTFAIVLPLCVRLGDSYN-GKSMHSYIIKAGL 153
Query: 140 EPPYDHFVQASLLNFYAKYGRLC-VSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXL 198
E D V +L++ YAK+G + + FD I++ D+ +WN ++
Sbjct: 154 EK--DTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAG------------F 199
Query: 199 EDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLG---ALSQGVWTHCYLL-RNNL 254
+ ++ +A FC M PN T+ ++ C+++ A G H Y++ R+ L
Sbjct: 200 SENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWL 259
Query: 255 KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ + FV +LV Y + G + A LF ++ +D +N +I
Sbjct: 260 QTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVI 301
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 76/189 (40%), Gaps = 17/189 (8%)
Query: 110 TFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFD 169
F + KAC G LH V K V S+LN YAK R+ + +F
Sbjct: 23 VFLDVVKACASVSD-LTSGRALHGCVFKLGHIACSE-VSKSVLNMYAKCRRMDDCQKMFR 80
Query: 170 QISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRR-RPNEVTLVA 228
Q+ D WN +L E + F M + +P+ VT
Sbjct: 81 QMDSLDPVVWNIVLTGLS-------------VSCGRETMRFFKAMHFADEPKPSSVTFAI 127
Query: 229 LISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCG-CLNLACQLFDQLTDR 287
++ C LG G H Y+++ L+ + VG ALV MY+K G A FD + D+
Sbjct: 128 VLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADK 187
Query: 288 DTFCYNAMI 296
D +NA+I
Sbjct: 188 DVVSWNAII 196
>AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor 18 |
chr5:6352771-6354828 REVERSE LENGTH=685
Length = 685
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 48/257 (18%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F I + + T+I +Q+ A Y +L ++P+ L A
Sbjct: 258 AEELFDQITEKDIVSWGTMIDGCL-RKNQLDEALVYYTEML-RCGMKPSEVMMVDLLSAS 315
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYA---------------------- 156
S G LH ++K YD F+QA++++FYA
Sbjct: 316 ARSVG-SSKGLQLHGTIVKRGFDCYD-FLQATIIHFYAVSNDIKLALQQFEASVKDHIAS 373
Query: 157 ---------KYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEA 207
K G + +R +FDQ + D+ +WN ++ A
Sbjct: 374 RNALIAGFVKNGMVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQL------------A 421
Query: 208 LYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
L+LF +M S+ +P+ +T+V++ SA S+LG+L +G H YL + + N + A++D
Sbjct: 422 LHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAAIID 481
Query: 267 MYSKCGCLNLACQLFDQ 283
MY+KCG + A +F Q
Sbjct: 482 MYAKCGSIETALNIFHQ 498
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 148/383 (38%), Gaps = 109/383 (28%)
Query: 9 NHPILKLLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSK------------ 53
++ L C S N + +Q+H ++L +GL + Y + +L + +K
Sbjct: 41 ERALVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFR 100
Query: 54 ------------LASTY--------ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFS 93
+ Y AL +F +P + Y TLI + + ++Q A
Sbjct: 101 DHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGY-AQNNQWSEAME 159
Query: 94 LYNRILAHKTLQPNSFTFPSLFKACCG-------------------SGHWFQYGPPLHAH 134
L+ R + + + N T ++ AC G F LH +
Sbjct: 160 LF-REMRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMY 218
Query: 135 VL---------KFLEPPYDHFVQAS-LLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLX 184
L F E P + V + +LN Y+K G + + LFDQI+E D+ +W T++
Sbjct: 219 CLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMID 278
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
L L EAL + +M +P+EV +V L+SA + S+G+
Sbjct: 279 GC-----------LRKNQLD-EALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQ 326
Query: 245 THC--------------------YLLRNNLKL--NRFVGT---------ALVDMYSKCGC 273
H Y + N++KL +F + AL+ + K G
Sbjct: 327 LHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGM 386
Query: 274 LNLACQLFDQLTDRDTFCYNAMI 296
+ A ++FDQ D+D F +NAMI
Sbjct: 387 VEQAREVFDQTHDKDIFSWNAMI 409
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 105/231 (45%), Gaps = 21/231 (9%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F + +F +N +IS + + S LA L+ +++ ++P++ T S+F A
Sbjct: 390 AREVFDQTHDKDIFSWNAMISGY-AQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAI 448
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQ---ISEPD 175
G + G H ++ PP D+ A++++ YAK G + + +F Q IS
Sbjct: 449 SSLGS-LEEGKRAHDYLNFSTIPPNDNLT-AAIIDMYAKCGSIETALNIFHQTKNISSST 506
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
++ WN ++ AL L+ D+Q +PN +T V ++SAC +
Sbjct: 507 ISPWNAIICGSATHGHAKL------------ALDLYSDLQSLPIKPNSITFVGVLSACCH 554
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDQL 284
G + G T+ ++++ + + +VD+ K G L A ++ ++
Sbjct: 555 AGLVELGK-TYFESMKSDHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKM 604
>AT2G35030.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:14761080-14762963 REVERSE
LENGTH=627
Length = 627
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A +F +P V + T+I+ + + A ++++++L +++PN T+ S+ AC
Sbjct: 283 ACGLFDRMPEKNVISWTTMITGYVENKEN-EEALNVFSKMLRDGSVKPNVGTYVSILSAC 341
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQ--ISEPDL 176
+ G +H + K + + V ++LLN Y+K G L +R +FD + + DL
Sbjct: 342 SDLAGLVE-GQQIHQLISKSVHQK-NEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDL 399
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
+WN+++ EA+ ++ M+ +P+ VT + L+ ACS+
Sbjct: 400 ISWNSMIAVYAHHGH------------GKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHA 447
Query: 237 GALSQGVWTHCYLLRN-NLKLNRFVGTALVDMYSKCGCL 274
G + +G+ L+R+ +L L T LVD+ + G L
Sbjct: 448 GLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRL 486
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 53/287 (18%)
Query: 57 TYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFK 116
+ A +F +P V +NT+I + + S +I A L++ + + N ++ S+ K
Sbjct: 126 SIAEMLFQEMPERNVVSWNTMIDGY-AQSGRIDKALELFDEMP-----ERNIVSWNSMVK 179
Query: 117 ACCGSGH------------------W-------FQYGPPLHAHVLKFLEPPYDHFVQASL 151
A G W + G A L P + ++
Sbjct: 180 ALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAM 239
Query: 152 LNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA---------- 201
+ YA+ R+ + LF + E D A+WNT++ L D
Sbjct: 240 ITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWT 299
Query: 202 ---------DLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLR 251
+ EAL +F M + +PN T V+++SACS+L L +G H + +
Sbjct: 300 TMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISK 359
Query: 252 NNLKLNRFVGTALVDMYSKCGCLNLACQLFDQ--LTDRDTFCYNAMI 296
+ + N V +AL++MYSK G L A ++FD + RD +N+MI
Sbjct: 360 SVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMI 406
>AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1524071-1526047 REVERSE
LENGTH=658
Length = 658
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 115/275 (41%), Gaps = 23/275 (8%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLA-STYALTIFSSIPNPTVFLYNTLISSFTS- 83
K +HA + +G + L+T K S +F + + V +IS
Sbjct: 175 KMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIEN 234
Query: 84 --HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEP 141
H + L FSL R L H PNS T+ S AC GS + G +HA + K+
Sbjct: 235 ELHEDGLRL-FSLMRRGLVH----PNSVTYLSALAACSGSQRIVE-GQQIHALLWKY-GI 287
Query: 142 PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
+ ++++L++ Y+K G + + +F+ +E D + +L L
Sbjct: 288 ESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVG------------LAQN 335
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
EA+ F M + + + A++ +L G H +++ N FV
Sbjct: 336 GSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVN 395
Query: 262 TALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L++MYSKCG L + +F ++ R+ +N+MI
Sbjct: 396 NGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMI 430
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 21/240 (8%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A+ +F +P V N + F + + F L R+L + T + +
Sbjct: 109 AIKLFDEMPMRDVISQNIVFYGFL-RNRETESGFVLLKRMLGSGGFDHATLT---IVLSV 164
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQAS--LLNFYAKYGRLCVSRCLFDQISEPDL 176
C + + +HA L L YD + L+ Y K G R +FD +S ++
Sbjct: 165 CDTPEFCLVTKMIHA--LAIL-SGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNV 221
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
T ++ L + +L + L LF M+ PN VT ++ ++ACS
Sbjct: 222 ITLTAVISG------------LIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGS 269
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+ +G H L + ++ + +AL+DMYSKCG + A +F+ T+ D ++
Sbjct: 270 QRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVIL 329
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 117/283 (41%), Gaps = 35/283 (12%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSH 84
+Q+HA + G+ S L+ + SK S A TIF S ++ +
Sbjct: 276 QQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQN 335
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG---HWFQYGPPLHAHVLKFLEP 141
S+ A + R+L Q ++ A G + G LH+ V+K +
Sbjct: 336 GSE-EEAIQFFIRML-----QAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIK-RKF 388
Query: 142 PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
+ FV L+N Y+K G L S+ +F ++ + + +WN+++
Sbjct: 389 SGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGH---------- 438
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
L AL L+ +M +P +VT ++L+ ACS++G + +G L N +K +
Sbjct: 439 --GLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKG-----RELLNEMKEVHGIE 491
Query: 262 ------TALVDMYSKCGCLNLACQLFDQLTDR-DTFCYNAMIG 297
T ++DM + G L A D L + D + A++G
Sbjct: 492 PRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLG 534
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 113 SLFKACCGSGHWFQY-GPPLHAHVLK---FLEPPYDHF------VQASLLNFYAKYGRLC 162
SL + CG WF + GP LHA ++K F EP V SLL+ YAK G+L
Sbjct: 48 SLLLSICGREGWFPHLGPCLHASIIKNPEFFEPVDADIHRNALVVWNSLLSLYAKCGKLV 107
Query: 163 VSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPN 222
+ LFD++ D+ + N + + E+ ++ + +
Sbjct: 108 DAIKLFDEMPMRDVISQNIVFYGFLR-------------NRETESGFVLLKRMLGSGGFD 154
Query: 223 EVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFD 282
TL ++S C H + + VG L+ Y KCGC +FD
Sbjct: 155 HATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFD 214
Query: 283 QLTDRDTFCYNAMI 296
++ R+ A+I
Sbjct: 215 GMSHRNVITLTAVI 228
>AT5G66500.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26548076-26549674 REVERSE
LENGTH=532
Length = 532
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 128/301 (42%), Gaps = 29/301 (9%)
Query: 2 KAQNPIFNHPILKLLQKCHSLN---TLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-T 57
+A + +H +L C L+ T +QVHA M+ G T + L+ + SK
Sbjct: 77 RASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMYSKYGHLV 136
Query: 58 YALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKA 117
++ +F S+ + +N L+S F + A ++ + + ++ + FT S+ K
Sbjct: 137 DSVRVFESVEEKDLVSWNALLSGFLRNGKGKE-ALGVFAAMYRER-VEISEFTLSSVVKT 194
Query: 118 CCGSGHWFQYGPPLHAHVLKFLEPPYDHFV-QASLLNFYAKYGRLCVSRCLFDQIS-EPD 175
C S Q G +HA V+ D V ++++FY+ G + + +++ ++ D
Sbjct: 195 CA-SLKILQQGKQVHAMVVV---TGRDLVVLGTAMISFYSSVGLINEAMKVYNSLNVHTD 250
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
N+L+ EA L MSR+RPN L + ++ CS+
Sbjct: 251 EVMLNSLISGCIRNRNYK------------EAFLL-----MSRQRPNVRVLSSSLAGCSD 293
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
L G HC LRN + + L+DMY KCG + A +F + + + +M
Sbjct: 294 NSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSM 353
Query: 296 I 296
I
Sbjct: 354 I 354
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 44/289 (15%)
Query: 15 LLQKCHSLNTL---KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPT- 70
+++ C SL L KQVHA ++ TG L + + SS A+ +++S+ T
Sbjct: 191 VVKTCASLKILQQGKQVHAMVVVTGRDLVVLGTAMISFYSSVGLINEAMKVYNSLNVHTD 250
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACC-GSGHWFQYGP 129
+ N+LIS + + AF L +R +PN S C S W G
Sbjct: 251 EVMLNSLISGCIRNRNYKE-AFLLMSR------QRPNVRVLSSSLAGCSDNSDLWI--GK 301
Query: 130 PLHAHVLKFLEPPYDHFVQAS-----LLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLX 184
+H L+ + FV S L++ Y K G++ +R +F I + +W +++
Sbjct: 302 QIHCVALR------NGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMID 355
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
D +LE C+ + S PN VT + +ISAC++ G + +G
Sbjct: 356 AYAVNG---------DGVKALEIFREMCE-EGSGVLPNSVTFLVVISACAHAGLVKEG-- 403
Query: 245 THCY-LLRNNLKLNRFVGTA----LVDMYSKCGCLNLACQLFDQLTDRD 288
C+ +++ +L GT +D+ SK G +L +++ + D
Sbjct: 404 KECFGMMKEKYRL--VPGTEHYVCFIDILSKAGETEEIWRLVERMMEND 450
>AT1G74400.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:27963953-27965341 FORWARD
LENGTH=462
Length = 462
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 27/292 (9%)
Query: 17 QKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAST-YALTIFSSIPNP-TVFLY 74
QK SL+ +Q+HA + G + L+ S + YA +F P + L+
Sbjct: 77 QKASSLDG-RQIHALVRKLGFNAVIQIQTSLVGFYSSVGDVDYARQVFDETPEKQNIVLW 135
Query: 75 NTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAH 134
+IS++T + + + A L+ R+ A K ++ + AC G Q G +++
Sbjct: 136 TAMISAYTENENSVE-AIELFKRMEAEK-IELDGVIVTVALSACADLGA-VQMGEEIYSR 192
Query: 135 VLKFLEP-PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
+K D ++ SLLN Y K G +R LFD+ D+ T+ +++
Sbjct: 193 SIKRKRRLAMDLTLRNSLLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYALNGQ-- 250
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRR------PNEVTLVALISACSNLGALSQGVWTHC 247
+ E+L LF M+ + PN+VT + ++ ACS+ G + +G
Sbjct: 251 ----------AQESLELFKKMKTIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFK 300
Query: 248 YLLRN-NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR-DTFCYNAMIG 297
++ + NLK +VD++ + G L A + +Q+ + +T + ++G
Sbjct: 301 SMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPIKPNTVIWRTLLG 352
>AT3G58590.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:21666262-21668487 FORWARD
LENGTH=741
Length = 741
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 43/299 (14%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTI-FSSIPNPTVFLYNTLISSFTSH 84
+Q+H ++ G + L+ +K + + F I + + +N L+S + +
Sbjct: 336 RQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALLSGYANK 395
Query: 85 SSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGS------GHWFQYGPPLHAHVLKF 138
I L SL+ ++L +P +TF + K+CC + + G + +VL
Sbjct: 396 DGPICL--SLFLQML-QMGFRPTEYTFSTALKSCCVTELQQLHSVIVRMGYEDNDYVLSS 452
Query: 139 LEPPY--DHFVQASLL------------------NFYAKYGRLCVSRCLFDQISEPDLAT 178
L Y + + +LL Y++ G+ S L + +PD +
Sbjct: 453 LMRSYAKNQLMNDALLLLDWASGPTSVVPLNIVAGIYSRRGQYHESVKLISTLEQPDTVS 512
Query: 179 WNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGA 238
WN + +D E + LF M S RP++ T V+++S CS L
Sbjct: 513 WNIAIAACSR------------SDYHEEVIELFKHMLQSNIRPDKYTFVSILSLCSKLCD 560
Query: 239 LSQGVWTHCYLLRNNLK-LNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
L+ G H + + + + FV L+DMY KCG + ++F++ +++ + A+I
Sbjct: 561 LTLGSSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLITWTALI 619
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 147 VQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLE 206
V SL++ Y K G ++ +F D+ +WN ++ ++ L+
Sbjct: 252 VVNSLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATA------------KSENPLK 299
Query: 207 ALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVD 266
AL LF M PN+ T V+++ S + LS G H L++N + +G AL+D
Sbjct: 300 ALKLFVSMPEHGFSPNQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCETGIVLGNALID 359
Query: 267 MYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
Y+KCG L + FD + D++ C+NA++
Sbjct: 360 FYAKCGNLEDSRLCFDYIRDKNIVCWNALL 389
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 118/294 (40%), Gaps = 23/294 (7%)
Query: 9 NHPILKLLQKCH---SLNTLKQVHAQMLT--TGLALHTYCLSHLLTISSKLAS-TYALTI 62
N ++ LL C S K +HA +T + L Y ++++++ KL + A +
Sbjct: 12 NDRVVSLLNVCRKAPSFARTKALHALSITLCSVLLQPVYVCNNIISLYEKLGEVSLAGKV 71
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
F +P +NT+I ++ + + A+ +++ + L PN T L C S
Sbjct: 72 FDQMPERNKVSFNTIIKGYSKYG-DVDKAWGVFSEMRYFGYL-PNQSTVSGLLS--CASL 127
Query: 123 HWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTL 182
+ G LH LK+ D FV LL Y + L ++ +F+ + L TWN +
Sbjct: 128 D-VRAGTQLHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHM 186
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ L E ++ F ++ E + + ++ S + L
Sbjct: 187 MSL------------LGHRGFLKECMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDIS 234
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
HC + L V +L+ Y KCG ++A ++F D +NA+I
Sbjct: 235 KQLHCSATKKGLDCEISVVNSLISAYGKCGNTHMAERMFQDAGSWDIVSWNAII 288
>AT5G15340.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:4982273-4984144 REVERSE
LENGTH=623
Length = 623
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 52/310 (16%)
Query: 26 KQVHAQMLTTGL--ALHTYCLSHLLTI-SSKLASTYALTIFSSIP--NPTVFLYNTLISS 80
K++HA + T+GL A +Y + L +S A +F IP + TL+SS
Sbjct: 26 KELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSS 85
Query: 81 FTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCG--------SGHWFQYGPPLH 132
F+ + ++ + L+ + K ++ + + LF C GH G +
Sbjct: 86 FSRYGLLVN-SMKLFVE-MRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGH----GVAVK 139
Query: 133 AHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXX 192
VL ++ V +L++ Y K G + + +F+++ E + +W +L
Sbjct: 140 MGVLTSVK------VCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGL 193
Query: 193 XXXXXL-------------------EDADLSLEALYLFCDMQMS-RRRPNEVTLVALISA 232
+ A + E L L +M N VTL +++SA
Sbjct: 194 ERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSA 253
Query: 233 CSNLGALSQGVWTHCYLLRNNLKLNR-------FVGTALVDMYSKCGCLNLACQLFDQLT 285
C+ G L G W H Y L+ + + VGTALVDMY+KCG ++ + +F +
Sbjct: 254 CAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMR 313
Query: 286 DRDTFCYNAM 295
R+ +NA+
Sbjct: 314 KRNVVTWNAL 323
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 119 CGSGHWFQYGPPLHAHVL-KFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQI--SEPD 175
C + + G LHA + L+ ++ +L FYA G + ++ LFD+I SE D
Sbjct: 16 CAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKD 75
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
W TLL L + ++ LF +M+ R ++V++V L C+
Sbjct: 76 NVDWTTLLSS------------FSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAK 123
Query: 236 LGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAM 295
L L H ++ + + V AL+DMY KCG ++ ++F++L ++ + +
Sbjct: 124 LEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVV 183
Query: 296 I 296
+
Sbjct: 184 L 184
>AT1G71420.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26917822-26920059 REVERSE
LENGTH=745
Length = 745
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 29/278 (10%)
Query: 27 QVHAQMLTTGLALHTYCLSHLLTISSKLASTYA--LTIFSSIPN-PTVFLYNTLISSFTS 83
Q+H+ + +GL T + L+ + S++ Y +F + + + +N +I++F
Sbjct: 288 QLHSLTVKSGLVTQTEVATALIKVYSEMLEDYTDCYKLFMEMSHCRDIVAWNGIITAFAV 347
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLK--FLEP 141
+ + A L+ ++ K L P+ +TF S+ KAC G ++ +HA V+K FL
Sbjct: 348 YDPE--RAIHLFGQLRQEK-LSPDWYTFSSVLKACAGLVT-ARHALSIHAQVIKGGFLA- 402
Query: 142 PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
D + SL++ YAK G L + +FD + D+ +WN++L
Sbjct: 403 --DTVLNNSLIHAYAKCGSLDLCMRVFDDMDSRDVVSWNSMLKAYSLHGQVDSI------ 454
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVG 261
L +F M ++ P+ T +AL+SACS+ G + +G+ + L +
Sbjct: 455 ------LPVFQKMDIN---PDSATFIALLSACSHAGRVEEGLRIFRSMFEKPETLPQLNH 505
Query: 262 TA-LVDMYSKCGCLNLACQLFDQL-TDRDTFCYNAMIG 297
A ++DM S+ A ++ Q+ D D + A++G
Sbjct: 506 YACVIDMLSRAERFAEAEEVIKQMPMDPDAVVWIALLG 543
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 28/195 (14%)
Query: 110 TFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY---DHFVQAS-LLNFYAKYGRLCVSR 165
+ +LF+AC + G LH H+L PY + + A+ L+N YAK G + +R
Sbjct: 61 AYAALFQACAEQRNLLD-GINLHHHMLSH---PYCYSQNVILANFLINMYAKCGNILYAR 116
Query: 166 CLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVT 225
+FD + E ++ +W L+ A E LF M +S PNE T
Sbjct: 117 QVFDTMPERNVVSWTALITGYV------------QAGNEQEGFCLFSSM-LSHCFPNEFT 163
Query: 226 LVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKC---GCLNLACQLFD 282
L +++++C G H L+ L + +V A++ MY +C A +F+
Sbjct: 164 LSSVLTSCR----YEPGKQVHGLALKLGLHCSIYVANAVISMYGRCHDGAAAYEAWTVFE 219
Query: 283 QLTDRDTFCYNAMIG 297
+ ++ +N+MI
Sbjct: 220 AIKFKNLVTWNSMIA 234
>AT1G53600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:20001263-20003416 FORWARD
LENGTH=717
Length = 717
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 19/236 (8%)
Query: 51 SSKLASTYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFT 110
S K + + +F +P + +IS+F S+ A ++++L K + PNS+T
Sbjct: 383 SGKGEISKCVELFGMMPEKDNITWTAMISAFVSNG-YYEEALCWFHKML-QKEVCPNSYT 440
Query: 111 FPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQ 170
F S+ A + G +H V+K + D VQ SL++ Y K G + +F
Sbjct: 441 FSSVLSATASLADLIE-GLQIHGRVVK-MNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSC 498
Query: 171 ISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALI 230
ISEP++ ++NT++ +AL LF ++ S + PN VT +AL+
Sbjct: 499 ISEPNIVSYNTMISGYSYN------------GFGKKALKLFSMLESSGKEPNGVTFLALL 546
Query: 231 SACSNLGALSQGVWTHCYLLRN--NLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
SAC ++G + G W + +++ N++ +VD+ + G L+ A L +
Sbjct: 547 SACVHVGYVDLG-WKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM 601
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 25/240 (10%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQ-PNSFTFPSLFKA 117
A +F IP Y T+I+ F + + A LY A ++ +S L
Sbjct: 132 AYELFCDIPEKNAVSYATMITGFV-RAGRFDEAEFLY----AETPVKFRDSVASNVLLSG 186
Query: 118 CCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLA 177
+G W + +K + +S+++ Y K GR+ +R LFD+++E ++
Sbjct: 187 YLRAGKWNEAVRVFQGMAVK------EVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVI 240
Query: 178 TWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDM-QMSRRRPNEVTLVALISACSNL 236
TW ++ A + LF M Q + N TL + AC +
Sbjct: 241 TWTAMIDGYF------------KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+G H + R L+ + F+G +L+ MYSK G + A +F + ++D+ +N++I
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLI 348
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 115/288 (39%), Gaps = 53/288 (18%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
A ++F + V + +I + + F L+ R+ ++ NS T +FKAC
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYF-KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKAC 285
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLF---------- 168
++ G +H V + + +D F+ SL++ Y+K G + ++ +F
Sbjct: 286 RDFVR-YREGSQIHGLVSR-MPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVS 343
Query: 169 -----------DQISE----------PDLATWNTLLXXXXXXXXXXXXXXL-----EDAD 202
QISE D+ +W ++ L E +
Sbjct: 344 WNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDN 403
Query: 203 LSL--------------EALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCY 248
++ EAL F M PN T +++SA ++L L +G+ H
Sbjct: 404 ITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGR 463
Query: 249 LLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+++ N+ + V +LV MY KCG N A ++F +++ + YN MI
Sbjct: 464 VVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMI 511
>AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 |
chr5:21350375-21352141 FORWARD LENGTH=588
Length = 588
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 140/292 (47%), Gaps = 33/292 (11%)
Query: 15 LLQKCHSLNTLK--QVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTV 71
LL + +T+K Q+H ++ +GL+L ++L+ SK + + F P +
Sbjct: 22 LLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSS 81
Query: 72 FLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC-----CGSGHWFQ 126
++++IS F + + ++ +++A L+P+ PS K+C C G
Sbjct: 82 TTWSSIISCF-AQNELPWMSLEFLKKMMA-GNLRPDDHVLPSATKSCAILSRCDIGR--- 136
Query: 127 YGPPLHAHVLKFLEPPYDH--FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLX 184
H L ++ YD FV +SL++ YAK G + +R +FD++ + ++ TW+ ++
Sbjct: 137 -----SVHCLS-MKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMY 190
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
+ EAL+LF + N+ + ++IS C+N L G
Sbjct: 191 GYAQMGE------------NEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQ 238
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
H ++++ + FVG++LV +YSKCG A Q+F+++ ++ +NAM+
Sbjct: 239 IHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAML 290
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 117/271 (43%), Gaps = 20/271 (7%)
Query: 15 LLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIPNPTVFL 73
+L +C + + VH + TG + S L+ + +K YA +F +P V
Sbjct: 128 ILSRC---DIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVT 184
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
++ ++ + + + A L+ L + L N ++F S+ C S + G +H
Sbjct: 185 WSGMMYGY-AQMGENEEALWLFKEAL-FENLAVNDYSFSSVISVCANS-TLLELGRQIHG 241
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXX 193
+ FV +SL++ Y+K G + +F+++ +L WN +L
Sbjct: 242 -LSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSH-- 298
Query: 194 XXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNN 253
+ + + LF M++S +PN +T + +++ACS+ G + +G + + +
Sbjct: 299 ----------TQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESR 348
Query: 254 LKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
++ +LVDM + G L A ++ +
Sbjct: 349 IEPTDKHYASLVDMLGRAGRLQEALEVITNM 379
>AT5G50990.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:20739453-20741281 FORWARD
LENGTH=534
Length = 534
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 157 KYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQM 216
K G +++ + S+ ++ TWN ++ E+A +L+ + F D+
Sbjct: 110 KIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQY------EEALKALKNMLSFTDI-- 161
Query: 217 SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNL 276
+PN+ + + ++AC+ LG L W H ++ + ++LN + +ALVD+Y+KCG +
Sbjct: 162 ---KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGT 218
Query: 277 ACQLFDQLTDRDTFCYNAMI 296
+ ++F + D +NAMI
Sbjct: 219 SREVFYSVKRNDVSIWNAMI 238
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 20/232 (8%)
Query: 56 STYALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
S A + + + V +N +I + + Q A +L+ ++PN F+F S
Sbjct: 114 SGLAKKVLRNASDQNVITWNLMIGGYV-RNVQYEEALKALKNMLSFTDIKPNKFSFASSL 172
Query: 116 KACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPD 175
AC G + +H+ ++ + + ++L++ YAK G + SR +F + D
Sbjct: 173 AACARLGD-LHHAKWVHSLMIDS-GIELNAILSSALVDVYAKCGDIGTSREVFYSVKRND 230
Query: 176 LATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSN 235
++ WN ++ L+ EA+ +F +M+ P+ +T + L++ CS+
Sbjct: 231 VSIWNAMITGFATH------------GLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSH 278
Query: 236 LGALSQGVWTHCYLLRN---NLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
G L +G + R KL + A+VD+ + G + A +L + +
Sbjct: 279 CGLLEEGKEYFGLMSRRFSIQPKLEHY--GAMVDLLGRAGRVKEAYELIESM 328
>AT1G09220.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:2977952-2979466 REVERSE
LENGTH=504
Length = 504
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKAC 118
AL +PN TV + T+I + + + A L++R++A ++PN T ++ A
Sbjct: 208 ALCFLEKMPNRTVVSWTTIIDGY-ARVDKPKEAILLFSRMVACDAIKPNEITILAILPAV 266
Query: 119 CGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQI--SEPDL 176
G G +HA+V K P D V SL++ YAK G + + F +I +L
Sbjct: 267 WNLGDLKMCGS-VHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNL 325
Query: 177 ATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
+W T++ + EA+ +F DM+ +PN VT++++++ACS+
Sbjct: 326 VSWTTMISAFAIH------------GMGKEAVSMFKDMERLGLKPNRVTMISVLNACSHG 373
Query: 237 GALSQGVWTHCYLLRNNLKLNRFVG--TALVDMYSKCGCLNLACQL 280
G + + N K+ V LVDM + G L A ++
Sbjct: 374 GLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEEAEKI 419
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 122/302 (40%), Gaps = 53/302 (17%)
Query: 15 LLQKCHS-LNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSIPNPTVFL 73
L+QK S L + Q+H+ T+G + L H S KL FL
Sbjct: 42 LMQKYESNLKIIHQLHSHFTTSG-----FLLLHQKQNSGKL-----------------FL 79
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILA-------HKTLQP-NSFTFPSLFKACCGSGHWF 125
+N L+ ++ + +H A+ LY+++ +K+L P +SFT+ L KA
Sbjct: 80 FNPLLRCYSLGETPLH-AYFLYDQLQRLHFLSDHNKSLPPFDSFTYLFLLKASSNPRFPS 138
Query: 126 QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
+ L +VQ +L+ Y G + + +FD++ E + TWN ++
Sbjct: 139 LLLGIGLHGLTLKLGFESHVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITG 198
Query: 186 -------------------XXXXXXXXXXXXLEDADLSLEALYLFCDMQM-SRRRPNEVT 225
D EA+ LF M +PNE+T
Sbjct: 199 LTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEIT 258
Query: 226 LVALISACSNLGALSQGVWTHCYL-LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQL 284
++A++ A NLG L H Y+ R + + V +L+D Y+KCGC+ A + F ++
Sbjct: 259 ILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEI 318
Query: 285 TD 286
+
Sbjct: 319 PN 320
>AT1G23450.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:8324698-8326697 FORWARD
LENGTH=666
Length = 666
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 19/236 (8%)
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
F + V YN LIS + + + A LY +++ L+ ++ TFPS+ C S
Sbjct: 69 FDEMSVRDVVTYNLLISGNSRYGCSLR-AIELYAEMVSCG-LRESASTFPSVLSVC--SD 124
Query: 123 HWF-QYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNT 181
F + G +H V+ L + FV+++L+ YA + V+ LFD++ + +LA N
Sbjct: 125 ELFCREGIQVHCRVIS-LGFGCNMFVRSALVGLYACLRLVDVALKLFDEMLDRNLAVCNL 183
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
LL S ++ M++ N +T +I CS+ + +
Sbjct: 184 LLRCFCQTGE------------SKRLFEVYLRMELEGVAKNGLTYCYMIRGCSHDRLVYE 231
Query: 242 GVWTHCYLLRNNLKL-NRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
G H ++++ + N FV LVD YS CG L+ + + F+ + ++D +N+++
Sbjct: 232 GKQLHSLVVKSGWNISNIFVANVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIV 287
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 157 KYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQM 216
K G L + FD++S D+ T+N L+ SL A+ L+ +M
Sbjct: 58 KSGNLLSAHEAFDEMSVRDVVTYNLLISGNSRY------------GCSLRAIELYAEMVS 105
Query: 217 SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNL 276
R + T +++S CS+ +G+ HC ++ N FV +ALV +Y+ +++
Sbjct: 106 CGLRESASTFPSVLSVCSDELFCREGIQVHCRVISLGFGCNMFVRSALVGLYACLRLVDV 165
Query: 277 ACQLFDQLTDRD 288
A +LFD++ DR+
Sbjct: 166 ALKLFDEMLDRN 177
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 126/275 (45%), Gaps = 19/275 (6%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLT--ISSKLASTYALTIFSSIPNPTVFLYNTLISSFTS 83
KQ+H+ ++ +G + ++++L S+ + ++ F+++P V +N+++S
Sbjct: 233 KQLHSLVVKSGWNISNIFVANVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIVSVCAD 292
Query: 84 HSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPY 143
+ S + + L+++ + +P+ F S C + Q G +H +VLK
Sbjct: 293 YGSVLD-SLDLFSK-MQFWGKRPSIRPFMSFLNFCSRNSD-IQSGKQIHCYVLKMGFDVS 349
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
VQ++L++ Y K + S L+ + +L N+L+ L +
Sbjct: 350 SLHVQSALIDMYGKCNGIENSALLYQSLPCLNLECCNSLMTS------------LMHCGI 397
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACS-NL-GALSQGVWTHCYLLRNNLKLNRFVG 261
+ + + +F M +EVTL ++ A S +L +L HC +++ + V
Sbjct: 398 TKDIIEMFGLMIDEGTGIDEVTLSTVLKALSLSLPESLHSCTLVHCCAIKSGYAADVAVS 457
Query: 262 TALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
+L+D Y+K G ++ ++FD+L + FC ++I
Sbjct: 458 CSLIDAYTKSGQNEVSRKVFDELDTPNIFCLTSII 492
>AT5G59600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:24011315-24012919 REVERSE
LENGTH=534
Length = 534
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Query: 26 KQVHAQMLTTGLALHTYCLSHLLTISSKLASTY-ALTIFSSIPNPTVFLYNTLISSFTSH 84
+ +HA ++T+G+A T + L+T + A +F +P + +I + +
Sbjct: 36 RVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCVVMIGACARN 95
Query: 85 SS-QIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWF--QYGPPLHAHVLKFLEP 141
Q L F R + L+ ++F PSL KA S + ++G +H VLKF
Sbjct: 96 GYYQESLDFF---REMYKDGLKLDAFIVPSLLKA---SRNLLDREFGKMIHCLVLKF-SY 148
Query: 142 PYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDA 201
D F+ +SL++ Y+K+G + +R +F + E DL +N ++ A
Sbjct: 149 ESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYANN---------SQA 199
Query: 202 DLSLEALYLFCDMQMSRRRPNEVTLVALISACSNL 236
D EAL L DM++ +P+ +T ALIS S++
Sbjct: 200 D---EALNLVKDMKLLGIKPDVITWNALISGFSHM 231
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Query: 103 TLQPNSF------TFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYA 156
T+ P+SF ++ L +A G F G LHAH++ + A L+ FY
Sbjct: 5 TIVPSSFRLLSIGSYVELIEAN-GRDRLFCRGRVLHAHLVTSGIARLTR-IAAKLVTFYV 62
Query: 157 KYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQM 216
+ G++ +R +FD++ + D++ ++ E+L F +M
Sbjct: 63 ECGKVLDARKVFDEMPKRDISGCVVMIGACARNGYYQ------------ESLDFFREMYK 110
Query: 217 SRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNL 276
+ + + +L+ A NL G HC +L+ + + + F+ ++L+DMYSK G +
Sbjct: 111 DGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGN 170
Query: 277 ACQLFDQLTDRDTFCYNAMI 296
A ++F L ++D +NAMI
Sbjct: 171 ARKVFSDLGEQDLVVFNAMI 190
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
P V + ++IS H+ Q AF + ++L H L PNS T +L AC + + ++
Sbjct: 250 KPDVVSWTSIISGLV-HNFQNEKAFDAFKQMLTH-GLYPNSATIITLLPACT-TLAYMKH 306
Query: 128 GPPLHAH-VLKFLEPPYDH-FVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXX 185
G +H + V+ LE DH FV+++LL+ Y K G + + LF + + T+N+++
Sbjct: 307 GKEIHGYSVVTGLE---DHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFC 363
Query: 186 XXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWT 245
+ L+ +A+ LF M+ + + + +T A+++ACS+ G G
Sbjct: 364 YA------------NHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLG--Q 409
Query: 246 HCYLLRNNL-----KLNRFVGTALVDMYSKCGCLNLACQLFDQLT-DRDTFCYNAMI 296
+ +LL N +L + +VD+ + G L A ++ + + D F + A++
Sbjct: 410 NLFLLMQNKYRIVPRLEHY--ACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALL 464
>AT4G16835.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:9472763-9474803 FORWARD
LENGTH=656
Length = 656
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 127/328 (38%), Gaps = 63/328 (19%)
Query: 4 QNPIFNHPILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTY--ALT 61
Q+ IF P+ K++ +C + ++ A +T + LL SK S A
Sbjct: 58 QDQIF--PLNKIIARCVRSGDIDGA-LRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQ 114
Query: 62 IFSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRI----------------------- 98
+F IP P F YN ++S + + + A S ++R+
Sbjct: 115 LFDEIPEPDTFSYNIMLSCYVRNVN-FEKAQSFFDRMPFKDAASWNTMITGYARRGEMEK 173
Query: 99 ---LAHKTLQPNSFTFPSLFKAC--CG----SGHWFQYGPPLHAHVLKFLEPPYDHFVQA 149
L + ++ N ++ ++ CG + H+F+ P
Sbjct: 174 ARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV------------VAWT 221
Query: 150 SLLNFYAKYGRLCVSRCLF-DQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADLSLEAL 208
+++ Y K ++ ++ +F D +L TWN ++ + + L
Sbjct: 222 AMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYV------------ENSRPEDGL 269
Query: 209 YLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGTALVDMY 268
LF M RPN L + + CS L AL G H + ++ L + T+L+ MY
Sbjct: 270 KLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMY 329
Query: 269 SKCGCLNLACQLFDQLTDRDTFCYNAMI 296
KCG L A +LF+ + +D +NAMI
Sbjct: 330 CKCGELGDAWKLFEVMKKKDVVAWNAMI 357
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 17/221 (7%)
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
N + +N +IS + +S+ L+ R + + ++PNS S C Q
Sbjct: 246 NKNLVTWNAMISGYV-ENSRPEDGLKLF-RAMLEEGIRPNSSGLSSALLGCSELSA-LQL 302
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXX 187
G +H V K D SL++ Y K G L + LF+ + + D+ WN ++
Sbjct: 303 GRQIHQIVSKST-LCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYA 361
Query: 188 XXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHC 247
+AD +AL LF +M ++ RP+ +T VA++ AC++ G ++ G+
Sbjct: 362 QHG---------NAD---KALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFE 409
Query: 248 YLLRN-NLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR 287
++R+ ++ T +VD+ + G L A +L + R
Sbjct: 410 SMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450
>AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 |
chr1:22997826-22999796 REVERSE LENGTH=656
Length = 656
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 141 PPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLED 200
P D +++ YA G + ++R F++ E +WN+++ ++
Sbjct: 339 PNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYE-----------KN 387
Query: 201 ADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFV 260
D EA+ LF M + +P+ TL +L+SA + L L G+ H +++ + + V
Sbjct: 388 KDYK-EAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPV 445
Query: 261 GTALVDMYSKCGCLNLACQLFDQLT-DRDTFCYNAMIG 297
AL+ MYS+CG + + ++FD++ R+ +NAMIG
Sbjct: 446 HNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIG 483
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 63 FSSIPNPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSG 122
F P +N++I+++ + A L+ R+ +P+ T SL A G
Sbjct: 366 FEKTPEKHTVSWNSIIAAYEKNKDYKE-AVDLFIRMNIEGE-KPDPHTLTSLLSASTGLV 423
Query: 123 HWFQYGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS-EPDLATWNT 181
+ + G +H V+K + P D V +L+ Y++ G + SR +FD++ + ++ TWN
Sbjct: 424 N-LRLGMQMHQIVVKTVIP--DVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNA 480
Query: 182 LLXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQ 241
++ EAL LF M+ + P+ +T V++++AC++ G + +
Sbjct: 481 MIGGYAFHGNAS------------EALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDE 528
>AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412854-23414746 FORWARD
LENGTH=630
Length = 630
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 125/298 (41%), Gaps = 29/298 (9%)
Query: 12 ILKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLAS-TYALTIFSSIP--- 67
+L + K + + + + QM G++ + Y S L+ + + + AL + + +
Sbjct: 87 LLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLG 146
Query: 68 -NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQ 126
P + N+L++ F H ++I A SL + + QP+SFTF +L +
Sbjct: 147 YEPDIVTLNSLLNGFC-HGNRISDAVSLVGQ-MVEMGYQPDSFTFNTLIHGLFRHNRASE 204
Query: 127 YGPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS----EPDLATWNTL 182
+ V+K +P D ++N K G + ++ L ++ EP + +NT+
Sbjct: 205 AVALVDRMVVKGCQP--DLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTI 262
Query: 183 LXXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQG 242
+ +AL LF +M RPN VT +LI N G S
Sbjct: 263 IDALCNYKNVN------------DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDA 310
Query: 243 VWTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR----DTFCYNAMI 296
++ + N +AL+D + K G L A +L+D++ R D F Y+++I
Sbjct: 311 SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 368
>AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:11695611-11697896 FORWARD LENGTH=761
Length = 761
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 108/295 (36%), Gaps = 60/295 (20%)
Query: 59 ALTIFSSIPNPTVFLYNTLISSFTSHS---SQIHLAFSLYNRILAHKTLQPNSFTFPSLF 115
A +F +P + + +IS F + + L + + A + PN T SL
Sbjct: 250 AYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDA---VSPNGETLISLA 306
Query: 116 KACCGSGHWFQY-GPPLHAHVLKFLEPPYDHFVQAS------------------------ 150
AC G G F+ G LHA V+ DH + +
Sbjct: 307 YACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESF 366
Query: 151 -------LLNFYAKYGRLCVSRCLFDQI-SEPDLATWNTL----LXXXXXXXXXXXXXXL 198
++N Y K G L + LF+++ S D +W ++ L L
Sbjct: 367 DLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKL 426
Query: 199 EDAD---------------LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
D D L EA L DM +P T L+S+ L QG
Sbjct: 427 HDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGK 486
Query: 244 WTHCYLLRNNL--KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDRDTFCYNAMI 296
HC + + + + +LV MY+KCG + A ++F ++ +DT +N+MI
Sbjct: 487 HIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMI 541
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 12/100 (12%)
Query: 144 DHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDADL 203
D +Q SL++ YAK G + + +F ++ + D +WN+++ L L
Sbjct: 502 DLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMG------------LSHHGL 549
Query: 204 SLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
+ +AL LF +M S ++PN VT + ++SACS+ G +++G+
Sbjct: 550 ADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGL 589
>AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:5461031-5462545 FORWARD
LENGTH=504
Length = 504
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 20/222 (9%)
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
P V +YNT+I S Q+ A L NR + + P+ T+ SL C SG W
Sbjct: 183 KPNVVIYNTIIDGLC-KSKQVDNALDLLNR-MEKDGIGPDVVTYNSLISGLCSSGRWSDA 240
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS----EPDLATWNTLL 183
+ + + P D F +L++ K GR+ + ++++ +PD+ T++ L+
Sbjct: 241 TRMVSCMTKREIYP--DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
EA +F M P+ VT LI+ + G+
Sbjct: 299 YGLCMYSRLD------------EAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLT 285
C + + + N T L+ Y + G LN+A ++F ++
Sbjct: 347 KLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMV 388
>AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23208247-23209893 REVERSE
LENGTH=548
Length = 548
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
P + YN +I S + +++ AF + I K ++PN T+ +L C S W
Sbjct: 187 KPDIVAYNAIIDSLC-KTKRVNDAFDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDA 244
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQIS----EPDLATWNTLL 183
L + K + P + ++LL+ + K G++ ++ LF+++ +PD+ T+++L+
Sbjct: 245 ARLLSDMIKKKITP--NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLI 302
>AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:5690020-5691543 FORWARD
LENGTH=507
Length = 507
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 24/237 (10%)
Query: 68 NPTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQY 127
P V Y TLI + H A L+N++ + + +PN T+ +L C G W
Sbjct: 185 KPNVVTYTTLIRCLCKNRHLNH-AVELFNQMGTNGS-RPNVVTYNALVTGLCEIGRWGDA 242
Query: 128 GPPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISE----PDLATWNTLL 183
L + + +EP F +L++ + K G+L ++ L++ + + PD+ T+ +L+
Sbjct: 243 AWLLRDMMKRRIEPNVITF--TALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLI 300
Query: 184 XXXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGV 243
L EA +F M+ + PNEV LI + G+
Sbjct: 301 NGLCMY------------GLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGM 348
Query: 244 WTHCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR----DTFCYNAMI 296
+ + + N T L+ Y G ++A ++F+Q++ R D YN ++
Sbjct: 349 KIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLL 405
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 139 LEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQI----SEPDLATWNTLLXXXXXXXXXXX 194
EP F SLLN Y + R+ + LFDQI +P++ T+ TL+
Sbjct: 149 FEPDLVTF--TSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCL-------- 198
Query: 195 XXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNL 254
++ L+ A+ LF M + RPN VT AL++ +G W +++ +
Sbjct: 199 ---CKNRHLN-HAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRI 254
Query: 255 KLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR----DTFCYNAMI 296
+ N TAL+D + K G L A +L++ + D F Y ++I
Sbjct: 255 EPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLI 300
>AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23388884-23390728 REVERSE
LENGTH=614
Length = 614
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 71 VFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPP 130
V +Y+T+I S + + A +L+ + +K ++P+ FT+ SL C G W
Sbjct: 240 VVIYSTVIDSLCKYR-HVDDALNLFTE-MDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 131 LHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQI----SEPDLATWNTLL 183
L + + + P F SL++ +AK G+L + LFD++ +P++ T+N+L+
Sbjct: 298 LSDMLERKINPNVVTF--NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLI 352
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 32/296 (10%)
Query: 13 LKLLQKCHSLNTLKQVHAQMLTTGLALHTYCLSHLLTISSKLASTYALTIFSSI----PN 68
L L+ K S+ L Q H M G+ + L TI SK ++A +F + +
Sbjct: 147 LSLIDKALSIVHLAQAHGFM--PGVLSYNAVLD--ATIRSKRNISFAENVFKEMLESQVS 202
Query: 69 PTVFLYNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYG 128
P VF YN LI F + I +A +L++++ L PN T+ +L C
Sbjct: 203 PNVFTYNILIRGFC-FAGNIDVALTLFDKMETKGCL-PNVVTYNTLIDGYCKLRKIDDGF 260
Query: 129 PPLHAHVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISEP----DLATWNTLLX 184
L + LK LEP + ++N + GR+ + +++ D T+NTL+
Sbjct: 261 KLLRSMALKGLEPNLISY--NVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 185 XXXXXXXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVW 244
+AL + +M P+ +T +LI + G +++ +
Sbjct: 319 GYCKEGNFH------------QALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAME 366
Query: 245 THCYLLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR----DTFCYNAMI 296
+ L N T LVD +S+ G +N A ++ ++ D YNA+I
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422
>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
chr1:23204773-23206665 REVERSE LENGTH=630
Length = 630
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 52/265 (19%)
Query: 28 VHAQMLTTGLALHTYCLSHLLTI---SSKLASTYALT--IFSSIPNPTVFLYNTLISSFT 82
V +M+ G + LS LL S +++ AL +F + P +NTLI
Sbjct: 138 VLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLF 197
Query: 83 SHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHAHVLKFLEPP 142
H+ A +L +R++A K QP+ T+ + C G
Sbjct: 198 LHNKASE-AMALIDRMVA-KGCQPDLVTYGVVVNGLCKRG-------------------- 235
Query: 143 YDHFVQASLLNFYAKYGRLCVSRCLFDQISEPDLATWNTLLXXXXXXXXXXXXXXLEDAD 202
D + +LLN + G+L EP + +NT++
Sbjct: 236 -DTDLAFNLLN-KMEQGKL-----------EPGVLIYNTIIDGLCKYKHMD--------- 273
Query: 203 LSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYLLRNNLKLNRFVGT 262
+AL LF +M+ RPN VT +LIS N G S ++ + + F +
Sbjct: 274 ---DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330
Query: 263 ALVDMYSKCGCLNLACQLFDQLTDR 287
AL+D + K G L A +L+D++ R
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKR 355
>AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:2181717-2184449 FORWARD
LENGTH=871
Length = 871
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 24/231 (10%)
Query: 74 YNTLISSFTSHSSQIHLAFSLYNRILAHKTLQPNSFTFPSLFKACCGSGHWFQYGPPLHA 133
YN +I F +++ A+ L + K +P T+ S+ +
Sbjct: 590 YNIVIDGFC-KCGKVNKAYQLLEE-MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647
Query: 134 HVLKFLEPPYDHFVQASLLNFYAKYGRLCVSRCLFDQISE----PDLATWNTLLXXXXXX 189
K +E + + +SL++ + K GR+ + + +++ + P+L TWN+LL
Sbjct: 648 AKSKRIE--LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA---- 701
Query: 190 XXXXXXXXLEDADLSLEALYLFCDMQMSRRRPNEVTLVALISACSNLGALSQGVWTHCYL 249
L A+ EAL F M+ + PN+VT LI+ + ++ +
Sbjct: 702 --------LVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Query: 250 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDQLTDR----DTFCYNAMI 296
+ +K + T ++ +K G + A LFD+ D+ CYNAMI
Sbjct: 754 QKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMI 804