Miyakogusa Predicted Gene
- Lj6g3v1177230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1177230.1 tr|Q69P88|Q69P88_ORYSJ Os09g0439800 protein
OS=Oryza sativa subsp. japonica GN=OJ1344_B01.21 PE=4
SV,34.3,7e-19,coiled-coil,NULL; seg,NULL,CUFF.59195.1
(259 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 79 2e-15
AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 60 2e-09
AT1G19115.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 52 3e-07
AT1G19115.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 52 4e-07
AT1G19115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 52 4e-07
>AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in
21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
- 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10
(source: NCBI BLink). | chr1:27289435-27290732 REVERSE
LENGTH=287
Length = 287
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 106/272 (38%), Gaps = 63/272 (23%)
Query: 35 KQEFNDWPQAFLHIGTLANSYAE----DSFPFQKYT------------------------ 66
++EFNDWP L IGT N D Q+ T
Sbjct: 32 REEFNDWPHGLLAIGTFGNKKQTPQTLDQEVIQEETVSNLHVEGRQAQDTDQELSSSDDL 91
Query: 67 -KEFKLEEVGKLQNELNMKXXXXXXXXXXXXXXXHSSLE-------PAAQEVET-ISD-V 116
++F EEVGKLQ EL ++L P++ EV+ IS+ +
Sbjct: 92 EEDFTPEEVGKLQKELTKLLTRRSKKRKSDVNRELANLPLDRFLNCPSSLEVDRRISNAL 151
Query: 117 SNIKHGNFYPGNSLIHSTGRDLCYDXXXXXXXXXXXXXXXX------XMFACRKGFQPTP 170
+ K + S+I + + + MF C +GF P P
Sbjct: 152 CDEKEEDIERTISVILGRCKAISTESKNKTKKNKRDLSKTSVSHLLKKMFVCTEGFSPVP 211
Query: 171 SFKDPLLST---DSRMEKILRAMLQKKIHPQGSSSTTFVKKYLEKDQMPQFXXXXXXXXX 227
P+L ++RMEK+LR ML KK++ Q SS T KKYL+ Q
Sbjct: 212 R---PILRDTFQETRMEKLLRMMLHKKVNTQASSKQTSTKKYLQDKQQLSLKNEEEEGR- 267
Query: 228 XXXXXXXXXPTSATNNGSKWVKTDSEYIVLEI 259
++N+G KWVKTDS++IVLEI
Sbjct: 268 ------------SSNDGGKWVKTDSDFIVLEI 287
>AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G72490.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr1:5960920-5962245 REVERSE LENGTH=295
Length = 295
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 16/105 (15%)
Query: 159 MFACRKGFQ--PTPSFKDPLLSTDSRMEKILRAMLQKKIHPQGSSSTTFV--KKYLEKDQ 214
+F C G P+PS +D L +SRMEK+L+ ML KKI+ Q SS T + K+YL+ +
Sbjct: 203 IFVCADGISTAPSPSLRDTL--QESRMEKLLKMMLHKKINAQASSKPTSLTTKRYLQDKK 260
Query: 215 MPQFXXXXXXXXXXXXXXXXXXPTSATNNGSKWVKTDSEYIVLEI 259
++++G KWVKTDS++IVLEI
Sbjct: 261 QLSLKSEEEETSE----------RRSSSDGYKWVKTDSDFIVLEI 295
>AT1G19115.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr1:6606351-6607667
FORWARD LENGTH=174
Length = 174
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 25/101 (24%)
Query: 159 MFACRKGFQPTPSFKDPLLSTDS----RMEKILRAMLQKKIHPQGSSSTTFVKKYLEKDQ 214
MF C GF+ P D L DS RMEK+LR +L KKIHPQ S+S KKYLE +
Sbjct: 94 MFVCTSGFKTPPPLLD-LSRGDSLHNTRMEKMLRTILNKKIHPQRSNS--IAKKYLESNH 150
Query: 215 MPQFXXXXXXXXXXXXXXXXXXPTSATNNGSKWVKTDSEYI 255
++ + +KWVKTDSE +
Sbjct: 151 ------------------KIMDEARSSVDANKWVKTDSECL 173
>AT1G19115.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr1:6606351-6607197
FORWARD LENGTH=175
Length = 175
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 25/99 (25%)
Query: 159 MFACRKGFQPTPSFKDPLLSTDS----RMEKILRAMLQKKIHPQGSSSTTFVKKYLEKDQ 214
MF C GF+ P D L DS RMEK+LR +L KKIHPQ S+S KKYLE +
Sbjct: 94 MFVCTSGFKTPPPLLD-LSRGDSLHNTRMEKMLRTILNKKIHPQRSNS--IAKKYLESNH 150
Query: 215 MPQFXXXXXXXXXXXXXXXXXXPTSATNNGSKWVKTDSE 253
++ + +KWVKTDSE
Sbjct: 151 ------------------KIMDEARSSVDANKWVKTDSE 171
>AT1G19115.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr1:6606351-6607313
FORWARD LENGTH=174
Length = 174
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 47/100 (47%), Gaps = 25/100 (25%)
Query: 159 MFACRKGFQPTPSFKDPLLSTDS----RMEKILRAMLQKKIHPQGSSSTTFVKKYLEKDQ 214
MF C GF+ P D L DS RMEK+LR +L KKIHPQ S+S KKYLE +
Sbjct: 94 MFVCTSGFKTPPPLLD-LSRGDSLHNTRMEKMLRTILNKKIHPQRSNS--IAKKYLESNH 150
Query: 215 MPQFXXXXXXXXXXXXXXXXXXPTSATNNGSKWVKTDSEY 254
++ + +KWVKTDSE
Sbjct: 151 ------------------KIMDEARSSVDANKWVKTDSEL 172