Miyakogusa Predicted Gene
- Lj6g3v1176180.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1176180.1 Non Chatacterized Hit- tr|I3SQC8|I3SQC8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.46,0,Chlorophyll a-b binding protein,Chlorophyll a/b binding
protein domain; Chloroa_b-bind,Chlorophyll A,CUFF.59193.1
(259 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harv... 385 e-107
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting co... 300 4e-82
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyl... 202 2e-52
AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting co... 175 3e-44
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting co... 175 3e-44
AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting co... 168 4e-42
AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting co... 168 4e-42
AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting co... 147 9e-36
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex ph... 143 1e-34
AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein... 142 2e-34
AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting co... 140 8e-34
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein... 132 2e-31
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light har... 132 3e-31
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light har... 132 3e-31
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chloro... 132 3e-31
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photos... 130 8e-31
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light ha... 130 1e-30
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyl... 130 1e-30
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-bi... 130 1e-30
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B bi... 130 1e-30
AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex photos... 129 1e-30
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II ... 128 3e-30
AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of photo... 125 4e-29
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorop... 120 1e-27
AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting co... 116 2e-26
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photos... 108 4e-24
AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting co... 97 7e-21
AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting co... 82 3e-16
AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex photos... 66 3e-11
AT2G40100.2 | Symbols: LHCB4.3 | light harvesting complex photos... 65 6e-11
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light
harvesting complex gene 6 | chr1:6612806-6613799 FORWARD
LENGTH=270
Length = 270
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 179/227 (78%), Positives = 200/227 (88%)
Query: 33 RRIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWL 92
R + A K VS VCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDP+GLGSDP+ LKW
Sbjct: 44 RLVVVRAGKEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWF 103
Query: 93 AQAELMHARWAMLGVSGILIPELLEKMGYDENYSWNEAGTQEYLADPTTLFIVQLALMGW 152
AQAEL+H+RWAML V+GI+IPE LE++G+ EN+SW +AG++EY AD TTLF+ Q+ LMGW
Sbjct: 104 AQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGW 163
Query: 153 VEGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEI 212
EGRRWADL+ PGSVDIEPK P++ NPKPDVGYPGGLWFD MMWGRGSPEPVMVLRTKEI
Sbjct: 164 AEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEI 223
Query: 213 KNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTSR 259
KNGRLAMLAF+GF FQA YT Q PIENLMAHLADPGHCN+FSAFTS
Sbjct: 224 KNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745736-22747032 FORWARD
LENGTH=257
Length = 257
Score = 300 bits (769), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 141/208 (67%), Positives = 162/208 (77%)
Query: 52 PDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGIL 111
PDRP+WFPGS+PPEWLDGSLPGDFGFDP+GL SDP+ LKW QAE++H RWAMLG +GI
Sbjct: 50 PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109
Query: 112 IPELLEKMGYDENYSWNEAGTQEYLADPTTLFIVQLALMGWVEGRRWADLVNPGSVDIEP 171
IPE L K+G SW AG QEY D TTLF+V+L L+GW EGRRWAD++ PGSV+ +P
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169
Query: 172 KLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIY 231
PN DVGYPGGLWFDP+ WG GSP + LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229
Query: 232 TGQGPIENLMAHLADPGHCNIFSAFTSR 259
TG GPI+NL AHLADPGH IF+AFT +
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFTPK 257
>AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting
chlorophyll-protein complex I subunit A4 |
chr3:17493622-17494773 REVERSE LENGTH=251
Length = 251
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/201 (49%), Positives = 132/201 (65%), Gaps = 6/201 (2%)
Query: 57 WFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELL 116
W PG + P++L GSL GD GFDP+GL DPE LKW QAEL++ RWAMLGV+G+L+PE+
Sbjct: 57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116
Query: 117 EKMGYDENYSWNEAGTQEYLADPTTLFIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNR 176
K+G W +AG ++Y A +TLF+++ L +VE RRW D+ NPGSV+ +P
Sbjct: 117 TKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY 176
Query: 177 PNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGP 236
PK +VGYPGG+ F+P+ + P + KE+ NGRLAMLAF+GF Q TG+GP
Sbjct: 177 SLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 230
Query: 237 IENLMAHLADPGHCNIFSAFT 257
ENL+ HL+DP H I F
Sbjct: 231 FENLLQHLSDPWHNTIVQTFN 251
>AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 139/239 (58%), Gaps = 6/239 (2%)
Query: 25 ERTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGS 84
R A+ + R ++ K + + +R W PG +PP +LDG+L GD+GFDP+GLG
Sbjct: 17 RRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGE 76
Query: 85 DPELLKWLAQAELMHARWAMLGVSGILIPELLEKMGYDENYSWNEAGTQEY-LADPTTLF 143
DPE LKW QAEL+H+R+AMLGV+GIL +LL G W EAG ++ A TL
Sbjct: 77 DPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLI 136
Query: 144 IVQLALMGWVEGRRWADLVNPGSVDIEPKL---PNRPNPKPDVGYPGGLWFDPMMWGRGS 200
+VQ LMG+ E +R+ D V+PGS E + GYPGG +P+ +
Sbjct: 137 VVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-D 195
Query: 201 PEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIF-SAFTS 258
+ + KEIKNGRLAM+A +GF+ QA T GPI+NL+ HL++P H I + FTS
Sbjct: 196 VQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTS 254
>AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 139/239 (58%), Gaps = 6/239 (2%)
Query: 25 ERTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGS 84
R A+ + R ++ K + + +R W PG +PP +LDG+L GD+GFDP+GLG
Sbjct: 17 RRDASSVITRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGE 76
Query: 85 DPELLKWLAQAELMHARWAMLGVSGILIPELLEKMGYDENYSWNEAGTQEY-LADPTTLF 143
DPE LKW QAEL+H+R+AMLGV+GIL +LL G W EAG ++ A TL
Sbjct: 77 DPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLI 136
Query: 144 IVQLALMGWVEGRRWADLVNPGSVDIEPKL---PNRPNPKPDVGYPGGLWFDPMMWGRGS 200
+VQ LMG+ E +R+ D V+PGS E + GYPGG +P+ +
Sbjct: 137 VVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-D 195
Query: 201 PEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIF-SAFTS 258
+ + KEIKNGRLAM+A +GF+ QA T GPI+NL+ HL++P H I + FTS
Sbjct: 196 VQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTS 254
>AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 27/225 (12%)
Query: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELL------KWLAQAELMHARWAMLG 106
+RPLWF S +LDGSLPGD+GFDP+GL SDPE +WLA E+++ R+AMLG
Sbjct: 52 NRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLG 110
Query: 107 VSGILIPELLEKMGY---DENYSWNE------AGTQEYLADPTTLFIVQLALMGWVEGRR 157
+G + PE+L K G + W + AGT Y AD TLF++++ALMG+ E RR
Sbjct: 111 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRR 170
Query: 158 WADLVNPGS------VDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKE 211
D NPGS + +E L NP YPGG +F+P+ +G+ + + L+ KE
Sbjct: 171 LQDWYNPGSMGKQYFLGLEKGLAGSGNPA----YPGGPFFNPLGFGK-DEKSLKELKLKE 225
Query: 212 IKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAF 256
+KNGRLAMLA +G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 226 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 27/225 (12%)
Query: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELL------KWLAQAELMHARWAMLG 106
+RPLWF S +LDGSLPGD+GFDP+GL SDPE +WLA E+++ R+AMLG
Sbjct: 52 NRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLG 110
Query: 107 VSGILIPELLEKMGY---DENYSWNE------AGTQEYLADPTTLFIVQLALMGWVEGRR 157
+G + PE+L K G + W + AGT Y AD TLF++++ALMG+ E RR
Sbjct: 111 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRR 170
Query: 158 WADLVNPGS------VDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKE 211
D NPGS + +E L NP YPGG +F+P+ +G+ + + L+ KE
Sbjct: 171 LQDWYNPGSMGKQYFLGLEKGLAGSGNPA----YPGGPFFNPLGFGK-DEKSLKELKLKE 225
Query: 212 IKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAF 256
+KNGRLAMLA +G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 226 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700493-22701149 FORWARD
LENGTH=218
Length = 218
Score = 147 bits (370), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 127/208 (61%), Gaps = 27/208 (12%)
Query: 70 SLPGDFGFDPIGLGSDPELL------KWLAQAELMHARWAMLGVSGILIPELLEKMGY-- 121
SLPGD+GFDP+GL SDPE +WLA E+++ R+AMLG +G + PE+L K G
Sbjct: 14 SLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 122 -DENYSWNE------AGTQEYLADPTTLFIVQLALMGWVEGRRWADLVNPGS------VD 168
+ W + AGT Y AD TLF++++ALMG+ E RR D NPGS +
Sbjct: 73 AETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLG 132
Query: 169 IEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQ 228
+E L NP YPGG +F+P+ +G+ + + L+ KE+KNGRLAMLA +G++ Q
Sbjct: 133 LEKGLAGSGNPA----YPGGPFFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQ 187
Query: 229 AIYTGQGPIENLMAHLADPGHCNIFSAF 256
+ TG GP +NL+ HLADP + N+ ++
Sbjct: 188 GLVTGVGPYQNLLDHLADPVNNNVLTSL 215
>AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446685-5447676 REVERSE
LENGTH=258
Length = 258
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 135/261 (51%), Gaps = 38/261 (14%)
Query: 1 MALSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKK-GVSDVCEPLPPDRPL--W 57
MA+++S LS ++ +R AT L + T A++ G + +P W
Sbjct: 1 MAMAVSGAVLSGLGSS---FLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSW 57
Query: 58 FPGSS------PPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGIL 111
P PEWLDGSLPGDFGFDP+GLG DP LKW +AEL+H RWAM V GI
Sbjct: 58 IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 117
Query: 112 IPELLEKMGYDENYSWNEAGTQEYLADP---TTLFIVQLALMGWVEGRRWADLVNPGSVD 168
+ + + +W EAG Q P +L QL LMGWVE +RW D NP S
Sbjct: 118 VGQAWSGV------AWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQS 171
Query: 169 IEPKLP------NRPNPKPDVGYPGGLWFDPM-MWGR---GSPEP----VMVLRTKEIKN 214
+E P N N D GYPGG +FDP+ + G+ G EP + L+ EIK+
Sbjct: 172 VEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKH 231
Query: 215 GRLAMLAFVGFWFQAIYTGQG 235
RLAM+A + F+F+A GQG
Sbjct: 232 SRLAMVAMLIFYFEA---GQG 249
>AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein |
chr5:10372978-10374190 REVERSE LENGTH=173
Length = 173
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 77/103 (74%)
Query: 157 RWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGR 216
R D++ PGSV+ +P PN D+GYPGGLWFDP+ WG GSP + LRTKEIKNGR
Sbjct: 71 RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130
Query: 217 LAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTSR 259
LAMLA +G WFQ IYTG GPI+NL AHLADPGH IF+AFT +
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 173
>AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=241
Length = 241
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 116/205 (56%), Gaps = 28/205 (13%)
Query: 57 WFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELL 116
W PG P +LDGS PGDFGFDP+GLG P L+ ++EL+H RWAML V GIL+PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 117 EKMGYDENYSWNE--AGTQEYLADPT------TLFIVQLALMGWVEGRRWADLVNPGSVD 168
+ + W G YL +P T+ ++ + +VE +R S++
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 169 IEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF- 227
+P+ YPGG FDP+ + + P+ + L+ KEIKNGRLA+LAFVGF
Sbjct: 160 KDPEKKK---------YPGGA-FDPLGYSK-DPKKLEELKVKEIKNGRLALLAFVGFCVQ 208
Query: 228 QAIYTGQGPIENLMAHLADPGHCNI 252
Q+ Y G GP+ENL HLADP H NI
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNI 233
>AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD LENGTH=327
Length = 327
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 42/281 (14%)
Query: 2 ALSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWF--- 58
A++ SS +S E++ K E ++ R + A++ +D + +RP WF
Sbjct: 65 AIANSSIGVSLRRRLEEKKKEAVENSS-----RFKSKAQEARND-SKWYGKERPRWFGPI 118
Query: 59 PGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLEK 118
P PP +L G LPGD+GFD GLG D E++HARWAML G LIPE+ +
Sbjct: 119 PYDYPP-YLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDL 177
Query: 119 MG---------YDENYSWNEAGTQEYLADP----------TTLFIVQLALMGWVEGRRWA 159
G + YS + T EYL P + I Q+ LM E R+
Sbjct: 178 TGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYC 237
Query: 160 DLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMV--LRTKEIKNGRL 217
G +EP P D+ YPGG FDP+ S +PV L+ KEIKNGRL
Sbjct: 238 -----GIEALEPLGIYLPG---DINYPGGTLFDPLNL---SEDPVAFEDLKVKEIKNGRL 286
Query: 218 AMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
AM+A++GF+ QA +TG+GP++NL+ H++DP H N+ + +
Sbjct: 287 AMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQT 327
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823449-1824331
REVERSE LENGTH=265
Length = 265
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 119/225 (52%), Gaps = 34/225 (15%)
Query: 52 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
PDRP + + P +L G PGD+G+D GL +DPE + E++H+RWAMLG G
Sbjct: 52 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 110 ILIPELLEKMGYDENYS-WNEAGTQ-------EYLADPT--------TLFIVQLALMGWV 153
PE+L K G + W +AG+Q +YL +P ++ VQ+ LMG++
Sbjct: 112 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFI 171
Query: 154 EGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIK 213
EG R P ++P YPGG FDP+ PE L+ KE+K
Sbjct: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLNLAE-DPEAFSELKVKELK 215
Query: 214 NGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
NGRLAM + GF+ QAI TG+GPIENL HLADP N +S T+
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATN 260
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799436-1800329
REVERSE LENGTH=265
Length = 265
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 119/225 (52%), Gaps = 34/225 (15%)
Query: 52 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
PDRP + + P +L G PGD+G+D GL +DPE + E++H+RWAMLG G
Sbjct: 52 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 110 ILIPELLEKMGYDENYS-WNEAGTQ-------EYLADPT--------TLFIVQLALMGWV 153
PE+L K G + W +AG+Q +YL +P ++ VQ+ LMG++
Sbjct: 112 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFI 171
Query: 154 EGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIK 213
EG R P ++P YPGG FDP+ PE L+ KE+K
Sbjct: 172 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLNLAE-DPEAFSELKVKELK 215
Query: 214 NGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
NGRLAM + GF+ QAI TG+GPIENL HLADP N +S T+
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATN 260
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting
chlorophyll-protein complex II subunit B1 |
chr2:14524818-14525618 FORWARD LENGTH=266
Length = 266
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 135/275 (49%), Gaps = 47/275 (17%)
Query: 3 LSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPG-- 60
++ S+ ALS+ T K K+ P + + RI + +P P W+
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGTGRIT------MRKASKPTGPSGSPWYGSDR 54
Query: 61 --------SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILI 112
PP +L G PGD+G+D GL +DPE + E++H+RWAMLG G +
Sbjct: 55 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVF 114
Query: 113 PELLEKMGYDENYS-WNEAGTQ-------EYLADPT--------TLFIVQLALMGWVEGR 156
PELL + G + W +AG+Q +YL +P+ ++ Q+ LMG VEG
Sbjct: 115 PELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 174
Query: 157 RWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGR 216
R A G + D+ YPGG FDP+ PE L+ KE+KNGR
Sbjct: 175 RVAGDGPLGEAE-------------DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGR 219
Query: 217 LAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCN 251
LAM + GF+ QAI TG+GP+ENL HLADP + N
Sbjct: 220 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex
photosystem II | chr5:209084-210243 FORWARD LENGTH=290
Length = 290
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 122/260 (46%), Gaps = 78/260 (30%)
Query: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKW--------------------- 91
DRPLW+PG+ P+WLDGSL GD+GFDP GLG E L++
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 92 ----------------------LAQAELMHARWAMLGVSGILIPELLEKMGYDENYSWNE 129
+ EL+H RWAML G L E L + +W +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQD 167
Query: 130 AGTQE------YLADP-----TTLFIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNRPN 178
AG E YL P +TL +++ ++G++E +R A+L D E +L
Sbjct: 168 AGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAEL------DSEKRL----- 216
Query: 179 PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIE 238
YPGG +FDP+ PE L+ EIK+ RLAM+AF+GF QA TG+GP+
Sbjct: 217 ------YPGGKFFDPLGLA-ADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 269
Query: 239 NLMAHLADPGHCNIFSAFTS 258
N HL+DP H I F+S
Sbjct: 270 NWATHLSDPLHTTIIDTFSS 289
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522716-14523513
REVERSE LENGTH=265
Length = 265
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 112/205 (54%), Gaps = 31/205 (15%)
Query: 63 PPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLEKMGYD 122
PP +L G PGD+G+D GL +DPE + E++H+RWAMLG G + PELL + G
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 123
Query: 123 ENYS-WNEAGTQ-------EYLADPT--------TLFIVQLALMGWVEGRRWADLVNPGS 166
+ W +AG+Q +YL +P+ ++ Q+ LMG VEG R A G
Sbjct: 124 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGE 183
Query: 167 VDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFW 226
+ D+ YPGG FDP+ PE L+ KE+KNGRLAM + GF+
Sbjct: 184 AE-------------DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFF 228
Query: 227 FQAIYTGQGPIENLMAHLADPGHCN 251
QAI TG+GP+ENL HLADP + N
Sbjct: 229 VQAIVTGKGPLENLADHLADPVNNN 253
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478071-10478874 FORWARD
LENGTH=267
Length = 267
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 114/211 (54%), Gaps = 34/211 (16%)
Query: 58 FPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLE 117
F G SP +L G PGD+G+D GL +DPE + E++H+RWAMLG G + PELL
Sbjct: 62 FSGESP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 118 KMGYDENYS-WNEAGTQ-------EYLADPT--------TLFIVQLALMGWVEGRRWADL 161
+ G + W +AG+Q +YL +P+ ++ Q+ LMG VEG R A
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG- 179
Query: 162 VNPGSVDIEPKLPNRP-NPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 220
N P D+ YPGG FDP+ PE L+ KE+KNGRLAM
Sbjct: 180 -------------NGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMF 224
Query: 221 AFVGFWFQAIYTGQGPIENLMAHLADPGHCN 251
+ GF+ QAI TG+GPIENL HLADP + N
Sbjct: 225 SMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll
A/B-binding protein 2 | chr1:10475089-10475892 REVERSE
LENGTH=267
Length = 267
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 114/211 (54%), Gaps = 34/211 (16%)
Query: 58 FPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLE 117
F G SP +L G PGD+G+D GL +DPE + E++H+RWAMLG G + PELL
Sbjct: 62 FSGESP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 118 KMGYDENYS-WNEAGTQ-------EYLADPT--------TLFIVQLALMGWVEGRRWADL 161
+ G + W +AG+Q +YL +P+ ++ Q+ LMG VEG R A
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG- 179
Query: 162 VNPGSVDIEPKLPNRP-NPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 220
N P D+ YPGG FDP+ PE L+ KE+KNGRLAM
Sbjct: 180 -------------NGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMF 224
Query: 221 AFVGFWFQAIYTGQGPIENLMAHLADPGHCN 251
+ GF+ QAI TG+GPIENL HLADP + N
Sbjct: 225 SMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472443-10473246 REVERSE
LENGTH=267
Length = 267
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 114/211 (54%), Gaps = 34/211 (16%)
Query: 58 FPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLE 117
F G SP +L G PGD+G+D GL +DPE + E++H+RWAMLG G + PELL
Sbjct: 62 FSGESP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 118 KMGYDENYS-WNEAGTQ-------EYLADPT--------TLFIVQLALMGWVEGRRWADL 161
+ G + W +AG+Q +YL +P+ ++ Q+ LMG VEG R A
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG- 179
Query: 162 VNPGSVDIEPKLPNRP-NPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 220
N P D+ YPGG FDP+ PE L+ KE+KNGRLAM
Sbjct: 180 -------------NGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMF 224
Query: 221 AFVGFWFQAIYTGQGPIENLMAHLADPGHCN 251
+ GF+ QAI TG+GPIENL HLADP + N
Sbjct: 225 SMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287
Length = 287
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 125/279 (44%), Gaps = 78/279 (27%)
Query: 34 RIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKW-- 91
R KK + + DRPLWFPG+ PE+LDGSL GD+GFDP GLG E L++
Sbjct: 32 RFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDL 91
Query: 92 -----------------------------------------LAQAELMHARWAMLGVSGI 110
+ EL+H RWAML G
Sbjct: 92 DSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA 151
Query: 111 LIPELLEKMGYDENYSWNEAGTQE------YLADP-----TTLFIVQLALMGWVEGRRWA 159
+ E L + +W +AG E YL P +TL +++ ++G++E +R A
Sbjct: 152 ITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNA 205
Query: 160 DLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAM 219
+L D E +L YPGG +FDP+ P L+ EIK+ RLAM
Sbjct: 206 EL------DSEKRL-----------YPGGKFFDPLGLA-SDPVKKAQLQLAEIKHARLAM 247
Query: 220 LAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
+ F+GF QA TG+GP+ N HL+DP H I F+S
Sbjct: 248 VGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II
light harvesting complex gene 2.3 |
chr3:10256002-10256921 FORWARD LENGTH=266
Length = 266
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 118/225 (52%), Gaps = 34/225 (15%)
Query: 52 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSG 109
PDRP + + P +L G PGD+G+D GL +DPE + E++H+RWAMLG G
Sbjct: 53 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 112
Query: 110 ILIPELLEKMGYDENYS-WNEAGTQ-------EYLADPT--------TLFIVQLALMGWV 153
PE+L K G + W +AG+Q +YL +P ++ Q+ LMG++
Sbjct: 113 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFI 172
Query: 154 EGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIK 213
EG R P ++P YPGG FDP+ PE L+ KE+K
Sbjct: 173 EGYRIGG--GPLGEGLDPL------------YPGGA-FDPLNLAE-DPEAFSELKVKELK 216
Query: 214 NGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
NGRLAM + GF+ QAI TG+GPIENL H+ADP N ++ T+
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANNAWAYATN 261
>AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of
photosystem II 5 | chr4:6408200-6409496 FORWARD
LENGTH=280
Length = 280
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 121/232 (52%), Gaps = 35/232 (15%)
Query: 43 VSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLA 93
VS+ + L PDR ++ P S PE+L+G + GD+G+DP GLG PE
Sbjct: 52 VSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQ 111
Query: 94 QAELMHARWAMLGVSGILIPELLEKMGYD--ENYSWNEAG-------TQEYLAD--PTTL 142
EL+HARWAMLG +G +IPE L K G + W + G T Y P L
Sbjct: 112 AFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 171
Query: 143 FIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPE 202
+ +A + + G + + N +D E KL +PGG FDP+ + PE
Sbjct: 172 VLAVVAEVVLLGGAEYYRITN--GLDFEDKL-----------HPGG-PFDPLGLAK-DPE 216
Query: 203 PVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFS 254
+L+ KEIKNGRLAM A +GF+ QA TG+GP+ENL HL+DP N+ +
Sbjct: 217 QGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting
chlorophyll B-binding protein 3 | chr5:22038424-22039383
FORWARD LENGTH=265
Length = 265
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 108/206 (52%), Gaps = 34/206 (16%)
Query: 64 PEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLEK---MG 120
P +L G PGD+G+D GL +DPE E++H RWAMLG G + PE+L+K +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVD 123
Query: 121 YDENYSWNEAGTQ-------EYLADPT--------TLFIVQLALMGWVEGRRWADLVNPG 165
+ E W +AG+Q +YL +P + Q+ LMG VEG R L G
Sbjct: 124 FKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182
Query: 166 SVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGF 225
+ D+ YPGG +FDP+ P L+ KEIKNGRLAM + GF
Sbjct: 183 EGN-------------DL-YPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGF 227
Query: 226 WFQAIYTGQGPIENLMAHLADPGHCN 251
+ QAI TG+GP+ENL+ HL +P N
Sbjct: 228 FVQAIVTGKGPLENLLDHLDNPVANN 253
>AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=207
Length = 207
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 98/197 (49%), Gaps = 46/197 (23%)
Query: 57 WFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELL 116
W PG P +LDGS PGDFGFDP+GLG P L+ ++EL+H RWAML V GIL+PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 117 EKMGYDENYSWNEAGTQEYLADPTTLFIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNR 176
GY WV+ + WA L PG +
Sbjct: 108 ---GYGN----------------------------WVKAQEWAAL--PGG-----QATYL 129
Query: 177 PNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWF-QAIYTGQG 235
NP P P L + + L+ KEIKNGRLA+LAFVGF Q+ Y G G
Sbjct: 130 GNPVPWGTLPTILAIEFLAI-------AFELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 182
Query: 236 PIENLMAHLADPGHCNI 252
P+ENL HLADP H NI
Sbjct: 183 PLENLATHLADPWHNNI 199
>AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16747190 FORWARD
LENGTH=276
Length = 276
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 114/242 (47%), Gaps = 79/242 (32%)
Query: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKW--------------------- 91
DR +WFPG++PPEWLDGS+ GD GFDP GLG E L++
Sbjct: 55 DRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGII 114
Query: 92 ----------------------LAQAELMHARWAMLGVSGILIPELLEKMGYDENYSWNE 129
+ EL+H RWAMLG G + E L + +W +
Sbjct: 115 QESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQD 168
Query: 130 AGTQE------YLADP-----TTLFIVQLALMGWVEGRRWADLVNPGSVDIEPKLPNRPN 178
AG E YL P TTL +++ ++G++E +R ++L D E ++
Sbjct: 169 AGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSEL------DPEKRI----- 217
Query: 179 PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIE 238
YPGG +FDP+ PE + L+ EIK+ RLAM+AF+ F QA +TG+GP+
Sbjct: 218 ------YPGG-YFDPLGLA-ADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVS 269
Query: 239 NL 240
L
Sbjct: 270 FL 271
>AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339881-20340922 REVERSE
LENGTH=213
Length = 213
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 95/184 (51%), Gaps = 28/184 (15%)
Query: 57 WFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELL 116
W PG P +LDGS PGDFGFDP+GLG P L+ ++EL+H RWAML V GIL+PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 117 EKMGYDENYSWNE--AGTQEYLADPT------TLFIVQLALMGWVEGRRWADLVNPGSVD 168
+ + W G YL +P T+ ++ + +VE +R S++
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 169 IEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGR-LAMLAFVGFWF 227
+P+ YPGG FDP+ + + P+ + L+ KEIKNG+ L F+ +
Sbjct: 160 KDPEKKK---------YPGGA-FDPLGYSK-DPKKLEELKVKEIKNGKHTQQLTFLDQTY 208
Query: 228 QAIY 231
+Y
Sbjct: 209 VQMY 212
>AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339961-20340922 REVERSE
LENGTH=164
Length = 164
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 57 WFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGILIPELL 116
W PG P +LDGS PGDFGFDP+GLG P L+ ++EL+H RWAML V GIL+PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 117 EKMGYDENYSWNE--AGTQEYLAD-------PTTLFIVQLALMGWVEGRR 157
+ + W G YL + PT L I LA + ++ RR
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAHLTLLDTRR 157
>AT3G08940.1 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718400 FORWARD LENGTH=227
Length = 227
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 56/141 (39%), Gaps = 49/141 (34%)
Query: 34 RIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKW-- 91
R KK + + DRPLWFPG+ PE+LDGSL GD+GFDP GLG E L++
Sbjct: 32 RFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDL 91
Query: 92 -----------------------------------------LAQAELMHARWAMLGVSGI 110
+ EL+H RWAML G
Sbjct: 92 DSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGA 151
Query: 111 LIPELLEKMGYDENYSWNEAG 131
+ E L + +W +AG
Sbjct: 152 ITVEWLTGV------TWQDAG 166
>AT2G40100.2 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16746545 FORWARD
LENGTH=185
Length = 185
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 53/125 (42%), Gaps = 49/125 (39%)
Query: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELLKW--------------------- 91
DR +WFPG++PPEWLDGS+ GD GFDP GLG E L++
Sbjct: 55 DRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGII 114
Query: 92 ----------------------LAQAELMHARWAMLGVSGILIPELLEKMGYDENYSWNE 129
+ EL+H RWAMLG G + E L + +W +
Sbjct: 115 QESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQD 168
Query: 130 AGTQE 134
AG E
Sbjct: 169 AGKVE 173