Miyakogusa Predicted Gene
- Lj6g3v1164020.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1164020.1 tr|G7JPD2|G7JPD2_MEDTR DEAD-box ATP-dependent RNA
helicase OS=Medicago truncatula GN=MTR_4g059460
PE,81.76,0,DEAD_ATP_HELICASE,RNA helicase, ATP-dependent, DEAD-box,
conserved site; DEAD-like helicases superfa,CUFF.59177.1
(614 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 729 0.0
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 263 2e-70
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 253 2e-67
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 198 1e-50
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 198 1e-50
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 195 6e-50
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 192 5e-49
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 186 4e-47
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 182 5e-46
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 182 8e-46
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 179 6e-45
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 173 3e-43
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 171 1e-42
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 171 1e-42
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 171 2e-42
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 167 3e-41
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 167 3e-41
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 166 3e-41
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 166 5e-41
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 166 6e-41
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 165 7e-41
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 165 8e-41
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 164 2e-40
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 164 2e-40
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 164 2e-40
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 164 2e-40
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 159 4e-39
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 159 5e-39
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 159 6e-39
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 155 6e-38
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 154 2e-37
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 152 7e-37
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 152 7e-37
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 152 7e-37
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 152 8e-37
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 151 2e-36
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 150 3e-36
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 146 4e-35
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 145 7e-35
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 142 5e-34
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 142 9e-34
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 140 2e-33
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 139 4e-33
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 139 4e-33
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 137 2e-32
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 137 2e-32
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 137 2e-32
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 137 3e-32
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 136 4e-32
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 136 4e-32
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 134 2e-31
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 132 7e-31
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 131 2e-30
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 126 5e-29
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 125 7e-29
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 125 7e-29
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 124 2e-28
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 123 3e-28
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 122 8e-28
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 122 8e-28
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 121 1e-27
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 117 2e-26
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 116 5e-26
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 108 1e-23
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 107 2e-23
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 107 2e-23
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 104 2e-22
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 101 2e-21
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 100 2e-21
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 100 5e-21
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 96 7e-20
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 91 2e-18
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 82 1e-15
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 82 1e-15
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 82 1e-15
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 79 1e-14
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 78 2e-14
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 75 2e-13
AT5G08110.1 | Symbols: | nucleic acid binding;ATP-dependent hel... 63 6e-10
AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosph... 61 2e-09
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/575 (62%), Positives = 439/575 (76%), Gaps = 9/575 (1%)
Query: 30 ARNGSCGDNSVFAXXXXXXXXXXXXXCDQLRDRLGFEAPTLVQAQAIPVILSGRHALVNA 89
A++ S + +FA DQL++R+GFEAPTLVQAQAIPVILSGR LVNA
Sbjct: 15 AKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNA 74
Query: 90 ATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFALVLVPTRELCLQVYEILVKLLHRFHWI 149
TGTGKTIAYLAP+IH+LQ + ++ RS GTFALV+VPTRELCLQVYE L KLLHRFHWI
Sbjct: 75 PTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWI 134
Query: 150 VPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILE 209
VPGY+MGGE ++KEKARLRKGISILIATPGRLLDHLK T+SFV+ NLRW+IFDEAD ILE
Sbjct: 135 VPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILE 194
Query: 210 LGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQRQNLLLSATLNEKVNHLAKISLENP 269
LG+GK+IE+I+ LLGS + ++++ VP Q+QNLLLSATLN+KVN LAK+SL++P
Sbjct: 195 LGYGKEIEQIIKLLGSGQNEQGEEDDIVPKG--IQKQNLLLSATLNDKVNDLAKLSLDDP 252
Query: 270 VMIGLDDKSIEPISTTASLDHAEPDEDSEEKY----SGKIPTVGDYKVPVQLIQRHVKVP 325
VMIGLD+ ++ + S A PD D+E+ P DY +P QL+QR+++VP
Sbjct: 253 VMIGLDNTKLQQNLSIES--PAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVP 310
Query: 326 CGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLKSFKFSSYPQI-EEGDKQM 384
CG+RL LLS+LK+LFERE SQKVVVFFST DAVDFHYSLL F++ + EEG K++
Sbjct: 311 CGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKEL 370
Query: 385 FLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEA 444
FL CK LHG+MEQE+RR++F FKTE A+LLSTDV+ARGLDFPKVRCIIQYDCPGEA
Sbjct: 371 FLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEA 430
Query: 445 TEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKHGVSLTEYPLLKVLDYFPLHGQSK 504
TEYVHRVGRTAR+GEKGE+LLFLQPIE DYL++L+KHG SLTEYPL+KVLD FP+ G
Sbjct: 431 TEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKFPIPGNMP 490
Query: 505 HLKKSVFIDSHPWVLCLQKALESFITSKPKLDELAKRAFCSWVRAYTAYXXXXXXXXXXX 564
+KK + ++SHPWV+ LQ+ALES ++PK+ LAK AF SWVR Y A+
Sbjct: 491 RIKKVLSLESHPWVISLQRALESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFVVK 550
Query: 565 XXXXXXVAKSFALKQQPSLVGKSFQKQIKKRKRYE 599
VAKSFAL++QPSLVGKS K+ KRKR E
Sbjct: 551 KLHLGHVAKSFALREQPSLVGKSHHKETMKRKRDE 585
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 170/492 (34%), Positives = 252/492 (51%), Gaps = 96/492 (19%)
Query: 63 LGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFA 122
+GF T +QA+AIP ++ G L A TG+GKT+A+L P + L Y + +GT
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELL--YRVKFTPRNGTGV 229
Query: 123 LVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLL 182
LV+ PTREL +Q Y + +LL ++H G ++GGE R E L KG+++L+ATPGRLL
Sbjct: 230 LVICPTRELAIQSYGVAKELL-KYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLL 288
Query: 183 DHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASK 242
DHL+ T+ F++ NL++++ DEADRILE F +D+++IL+LL T
Sbjct: 289 DHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKT---------------- 332
Query: 243 TQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYS 302
RQ L SAT + KV LA++SL +PV I +D+ E T L+
Sbjct: 333 --RQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKE--VTNEGLE------------- 375
Query: 303 GKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFH 362
Q + VP RL LL+ LK + +K++VFFSTC + FH
Sbjct: 376 ----------------QGYCVVPSAMRLLFLLTFLKRF---QGKKKIMVFFSTCKSTKFH 416
Query: 363 YSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDV 422
L + KF C L + G ++Q R +F F + +LL T+V
Sbjct: 417 AELFRYIKFD---------------C--LEIRGGIDQNKRTPTFLQFIKAETGILLCTNV 459
Query: 423 SARGLDFPKVRCIIQYDCPGEATEYVHRVGRTAR-LGEKGESLLFLQPIERDYLQDLEKH 481
+ARGLDFP V I+QYD P T+Y+HRVGRTAR G KG++LL L P E ++Q L+
Sbjct: 460 AARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYLKAA 519
Query: 482 GVSLTEYPLLKVLDYFPLHGQSKHLKKSVFIDSHPWVLCLQKALESFITSKPKLDELAKR 541
+ + E+ ++ +D P+V E+ I+ L E AK
Sbjct: 520 KIPVEEH----------------EFEEKKLLDVKPFV-------ENLISENYALKESAKE 556
Query: 542 AFCSWVRAYTAY 553
A+ +++ Y ++
Sbjct: 557 AYKTYISGYDSH 568
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 182/547 (33%), Positives = 269/547 (49%), Gaps = 103/547 (18%)
Query: 63 LGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFA 122
+GF+ T +QA +I +L G+ L A TG+GKT+A+L P + L + R +GT
Sbjct: 107 MGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELL--FKERFSPRNGTGV 164
Query: 123 LVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLL 182
+V+ PTREL +Q + +LL + H ++GG NR E R+ G +++IATPGRLL
Sbjct: 165 IVICPTRELAIQTKNVAEELL-KHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLL 223
Query: 183 DHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASK 242
DHL+ T +F+Y +L+ ++ DEADRILE F +D+ +IL +L TR
Sbjct: 224 DHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTR--------------- 268
Query: 243 TQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYS 302
Q L SAT KV LA++SL +PV + +DD
Sbjct: 269 ---QTALFSATQTSKVKDLARVSLTSPVHVDVDD-------------------------- 299
Query: 303 GKIPTVGDYKVPVQ-LIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDF 361
G KV + L Q + VP RL +L+S LK + ++K++VFFSTC +V F
Sbjct: 300 ------GRRKVTNEGLEQGYCVVPSKQRLILLISFLK----KNLNKKIMVFFSTCKSVQF 349
Query: 362 HYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTD 421
H ++K I + D + +HG M+Q R +F F +LL TD
Sbjct: 350 HTEIMK---------ISDVD--------VSDIHGGMDQNRRTKTFFDFMKAKKGILLCTD 392
Query: 422 VSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTAR-LGEKGESLLFLQPIERDYLQDLEK 480
V+ARGLD P V IIQYD P + TEY+HRVGRTAR G KG++LL L P E +++ L+
Sbjct: 393 VAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYLKA 452
Query: 481 HGVSLTEYPLLKVLDYFPLHGQSKHLKKSVFIDSHPWVLCLQKALESFITSKPKLDELAK 540
V + E L K L +Q ALE + L++LAK
Sbjct: 453 AKVPVKE-----------LEFNEKRLSN------------VQSALEKCVAKDYNLNKLAK 489
Query: 541 RAFCSWVRAYTAYXXXXXXXXXXXXXXXXXVAKSFALKQQP--SLVGKSFQKQIKKRKRY 598
A+ +++ AY ++ VA+SF P +L +S +++K ++
Sbjct: 490 DAYRAYLSAYNSH--SLKDIFNVHRLDLLAVAESFCFSSPPKVNLNIESGAGKVRKARKQ 547
Query: 599 EKNNGLS 605
+ NG S
Sbjct: 548 QGRNGFS 554
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 203/430 (47%), Gaps = 71/430 (16%)
Query: 61 DRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT 120
DR GFE T VQA+ IP + S + +V+AATG+GKT+A+L P I ++ ++ +
Sbjct: 32 DRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQV 91
Query: 121 FALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARL-RKGISILIATPG 179
+++ PTREL Q++++ + + ++GG + L +G ++LI TPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 180 RLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPG 239
RL D +K+ + NL +I DEADR+L++GF K + I+ L
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL---------------- 195
Query: 240 ASKTQRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDEDS 297
QR+ L SAT + V LAK L N V+ G + KS E D+ S
Sbjct: 196 --PKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKS 253
Query: 298 EEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCD 357
+ L HL ++K+VVFF TC
Sbjct: 254 SQ-------------------------------------LVHLLIENKNKKLVVFFMTCA 276
Query: 358 AVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALL 417
VD+ +L S P ++ HG M+Q+ R T+ +F +S +L
Sbjct: 277 CVDYWGLVL-----SKIPTLK--------SISFFSTHGKMDQKGRDTALASFTEASSGVL 323
Query: 418 LSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQD 477
L TDV+ARGLD P + ++QYD P + ++HRVGRTAR+ +G +++FL P E DY++
Sbjct: 324 LCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDYVEF 383
Query: 478 LEKHGVSLTE 487
+ V L E
Sbjct: 384 MRIRRVPLQE 393
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/484 (31%), Positives = 232/484 (47%), Gaps = 100/484 (20%)
Query: 69 TLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFALVLVPT 128
T VQ+ AIP L GR L A TG+GKT+A++ PI+ L + R DG +++ PT
Sbjct: 95 TDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKL--HRERWSPEDGVGCIIISPT 152
Query: 129 RELCLQVYEILVKLLHRFHWIVPGYIMGG-ENRSKEKARLRKGISILIATPGRLLDHLKK 187
REL Q + +L K+ +FH G ++GG E EK R+ + ++IL+ PGRLL H+ +
Sbjct: 153 RELAAQTFGVLNKV-GKFHKFSAGLLIGGREGVDVEKERVHE-MNILVCAPGRLLQHMDE 210
Query: 188 TSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQRQN 247
T +F L+ +I DEADR+L+ F ++ I+ L RQ
Sbjct: 211 TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPK------------------HRQT 252
Query: 248 LLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGKIPT 307
LL SAT +KV LA++SL +P I S+ + TA+
Sbjct: 253 LLFSATQTKKVKDLARLSLRDPEYI-----SVHAEAVTAT-------------------- 287
Query: 308 VGDYKVPVQLIQRHVKVPCGSRLPVLLSILK-HLFEREPSQKVVVFFSTCDAVDFHYSLL 366
P L+Q + VP +L +L S +K HL R ++VF ST V F
Sbjct: 288 ------PTSLMQTVMIVPVEKKLDMLWSFIKTHLNSR-----ILVFLSTKKQVKF----- 331
Query: 367 KSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARG 426
+ E ++ G + LHG M QE R + F E ++L TDV ARG
Sbjct: 332 ----------VHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQF-IERQSVLFCTDVLARG 380
Query: 427 LDFPK-VRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKHGVSL 485
LDF K V ++Q DCP + Y+HRVGRTAR +G+SLLFL P E ++ L++ V +
Sbjct: 381 LDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEAKVPI 440
Query: 486 TEYPLLKVLDYFPLHGQSKHLKKSVFIDSHPWVLCLQKALESFITSKPKLDELAKRAFCS 545
L+K ++ L++ + + L + + P L +A+RAF +
Sbjct: 441 K---LIK--------ANNQKLQE------------VSRLLAALLVKYPDLQGVAQRAFIT 477
Query: 546 WVRA 549
++R+
Sbjct: 478 YLRS 481
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 205/418 (49%), Gaps = 73/418 (17%)
Query: 63 LGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFA 122
LG++ PT +QA IP+ L+GR +A TG+GKT A+ P + L R +R T
Sbjct: 185 LGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLF---RPKRVFATRV 241
Query: 123 LVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLL 182
L+L PTREL +Q++ +++ L +F I G I+GG + +++ LR I++ATPGR++
Sbjct: 242 LILTPTRELAVQIHS-MIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMI 300
Query: 183 DHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASK 242
DHL+ + S +L +I DEADR+L+ GF +I E++ L C
Sbjct: 301 DHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRL-------C-----------P 342
Query: 243 TQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYS 302
+RQ +L SAT+ E+V L K+SL P+ + D + P T
Sbjct: 343 KRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLT----------------- 385
Query: 303 GKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFH 362
+ + R + ++ VLLS+ F+ KV++F T A
Sbjct: 386 -------------EEVVRIRRTREANQEAVLLSLCTRTFK----SKVIIFSGTKQAA--- 425
Query: 363 YSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDV 422
+ L F + G K LHGN+ Q R S + F+ + L++TDV
Sbjct: 426 HRLKILFGLA--------------GLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDV 471
Query: 423 SARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK 480
+ARGLD V+ +I Y CP E YVHRVGRTAR G +G ++ F+ +R L+ + K
Sbjct: 472 AARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 529
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 209/424 (49%), Gaps = 58/424 (13%)
Query: 65 FEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFALV 124
FE T VQA IP++ S + V+AATG+GKT+A++ P++ L+ + + ++
Sbjct: 36 FEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVI 95
Query: 125 LVPTRELCLQVYEILVKLLHRFHWIVPGYIMGG-ENRSKEKARLRKGISILIATPGRLLD 183
+ PTREL Q+Y + + + ++GG E ++ K +G ++LI TPGRL D
Sbjct: 96 ISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSD 155
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
+++ + NL +I DEADR+LE+GF + + I+ L
Sbjct: 156 IMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL------------------PK 197
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSG 303
QR+ L SAT E V LAK L NPV + + KS E S++
Sbjct: 198 QRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKS--------------KSESSQQ---- 239
Query: 304 KIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHY 363
+ + K P L +++ + L+ +L + +K++VFF TC +VD+
Sbjct: 240 ----LTNSKTPSGLHLEYMECEADKKSSQLVDLLI----KNSDKKLIVFFMTCASVDYWG 291
Query: 364 SLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVS 423
+L S P ++ ++ +HG+M+Q R + +F +S LL TDV+
Sbjct: 292 LVL-----SKIPALK--------SISLIPIHGDMKQNARDKALASFTKASSGALLCTDVA 338
Query: 424 ARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKHGV 483
ARGLD P + ++QYD P + + HR GRTARLG +G +++FL P E Y++ + V
Sbjct: 339 ARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRV 398
Query: 484 SLTE 487
L E
Sbjct: 399 PLEE 402
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/436 (30%), Positives = 198/436 (45%), Gaps = 80/436 (18%)
Query: 61 DRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSY-----DNRIQ 115
+RLG++ P+ +QA+A+P L G+ + A TG+GKT A+ PI+ L Y + +
Sbjct: 25 ERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGR 84
Query: 116 RSD-GTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISIL 174
R D FA VL PTREL +Q+ E L + ++GG +R ++ L K ++
Sbjct: 85 RPDPAFFACVLSPTRELAIQIAEQFEALGADIS-LRCAVLVGGIDRMQQTIALGKRPHVI 143
Query: 175 IATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQE 234
+ATPGRL DH+ T F +L++++ DEADR+L F K + +IL+
Sbjct: 144 VATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE------------- 190
Query: 235 NAVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPD 294
+P +R+ L SAT+ +KV L + L NPV
Sbjct: 191 -EIP----LERKTFLFSATMTKKVRKLQRACLRNPV------------------------ 221
Query: 295 EDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFS 354
KI Y L Q++ V + L+ IL + P ++F
Sbjct: 222 ---------KIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEM----PESTSMIFTR 268
Query: 355 TCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENS 414
TCD F +L+S F + P + G M Q R + FK
Sbjct: 269 TCDGTRFLALVLRSLGFRAIP-----------------ISGQMTQSKRLGALNKFKAGEC 311
Query: 415 ALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDY 474
+L+ TDV++RGLD P V +I YD P + +Y+HRVGRTAR G G + + E ++
Sbjct: 312 NILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEW 371
Query: 475 LQDLEKH-GVSLTEYP 489
+EK G L EYP
Sbjct: 372 YIQIEKLIGKKLPEYP 387
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 210/433 (48%), Gaps = 80/433 (18%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTF 121
+L +E P +Q QA+P+I+SGR + A TG+GKT+ ++ P++ +++ ++ DG
Sbjct: 546 KLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPP-VEAGDGPI 604
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFH-WIVPGYIMGGENRSKEKARLRKGISILIATPGR 180
LV+ PTREL Q++ + K VP Y GG +++ + L++G I++ TPGR
Sbjct: 605 GLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVY--GGSGVAQQISELKRGTEIVVCTPGR 662
Query: 181 LLDHLKKTSSFVYTNLRWIIF---DEADRILELGFGKDIEEILDLLGSTRTGCDDQENAV 237
++D L TSS TNLR + F DEADR+ ++GF I I+ +N
Sbjct: 663 MIDIL-CTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRII-------------QNIR 708
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDS 297
P +RQ +L SAT +V LA+ L PV I + +S+ T
Sbjct: 709 P-----ERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDIT------------ 751
Query: 298 EEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCD 357
QL++ P R LL +L E+ K++VF + +
Sbjct: 752 ------------------QLVEVR---PESDRFLRLLELLGEWSEK---GKILVFVQSQE 787
Query: 358 AVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALL 417
D +L + SSYP C L LHG +Q +R ++ FK + LL
Sbjct: 788 KCD---ALYRDMIKSSYP------------C--LSLHGGKDQTDRESTISDFKNDVCNLL 830
Query: 418 LSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQD 477
++T V+ARGLD ++ ++ +D P +YVHRVGRT R G KG ++ F+ + Y D
Sbjct: 831 IATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPD 890
Query: 478 LEKHGVSLTEYPL 490
L K + L+E P+
Sbjct: 891 LVK-ALELSEQPV 902
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 182 bits (461), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 210/433 (48%), Gaps = 80/433 (18%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTF 121
+L +E P +Q QA+P+I+SGR + A TG+GKT+ ++ P++ +++ ++ DG
Sbjct: 208 KLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPP-VEAGDGPI 266
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHW-IVPGYIMGGENRSKEKARLRKGISILIATPGR 180
LV+ PTREL Q++ + K VP Y GG +++ + L++G I++ TPGR
Sbjct: 267 GLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVY--GGSGVAQQISELKRGTEIVVCTPGR 324
Query: 181 LLDHLKKTSSFVYTNLRWIIF---DEADRILELGFGKDIEEILDLLGSTRTGCDDQENAV 237
++D L TSS TNLR + F DEADR+ ++GF I I+ +N
Sbjct: 325 MIDIL-CTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRII-------------QNIR 370
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDS 297
P +RQ +L SAT +V LA+ L PV I + +S+ T
Sbjct: 371 P-----ERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDIT------------ 413
Query: 298 EEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCD 357
QL++ P R LL +L E+ K++VF + +
Sbjct: 414 ------------------QLVEVR---PESDRFLRLLELLGEWSEK---GKILVFVQSQE 449
Query: 358 AVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALL 417
D +L + SSYP C L LHG +Q +R ++ FK + LL
Sbjct: 450 KCD---ALYRDMIKSSYP------------C--LSLHGGKDQTDRESTISDFKNDVCNLL 492
Query: 418 LSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQD 477
++T V+ARGLD ++ ++ +D P +YVHRVGRT R G KG ++ F+ + Y D
Sbjct: 493 IATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPD 552
Query: 478 LEKHGVSLTEYPL 490
L K + L+E P+
Sbjct: 553 LVK-ALELSEQPV 564
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 197/414 (47%), Gaps = 89/414 (21%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTF 121
+LGF PT +QAQ P+ L GR + A TG+GKT+AYL P + ++ S R+ + DG
Sbjct: 182 KLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHV-SAQPRLGQDDGPI 240
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
L+L PTREL +Q+ E K R + I GG + + LR+G+ I+IATPGRL
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLR-SGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 299
Query: 182 LDHLKKTSSFVYTNLR---WIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVP 238
+D L+ +TNL+ +++ DEADR+L++GF I +I+ +
Sbjct: 300 IDMLE----CQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI--------------- 340
Query: 239 GASKTQRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDED 296
+ RQ LL SAT +V LA+ L +P +IG D + S++
Sbjct: 341 ---RPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTD-----LKANQSIN------- 385
Query: 297 SEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST- 355
Q+I+ VP + LL++LK L + K+++F T
Sbjct: 386 -------------------QVIE---IVPTPEKYNRLLTLLKQLMD---GSKILIFVETK 420
Query: 356 --CDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTEN 413
CD V + + +P L +HG+ Q R FK+
Sbjct: 421 RGCDQV------TRQLRMDGWP--------------ALAIHGDKTQSERDRVLAEFKSGR 460
Query: 414 SALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
S ++ +TDV+ARGLD ++C++ YD P +Y+HR+GRT R G KG + F
Sbjct: 461 SPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFF 514
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 149/496 (30%), Positives = 221/496 (44%), Gaps = 100/496 (20%)
Query: 69 TLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNR---IQRSDGTFALVL 125
T VQ + L G+ ALV A TGTGK++A+L P I + N + + FAL+L
Sbjct: 352 TRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALIL 411
Query: 126 VPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLR-KGISILIATPGRLLDH 184
PTREL Q+ LL I ++GG ++ RL + ILIATPGRLLDH
Sbjct: 412 CPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDH 471
Query: 185 LKKTSSFV--YTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASK 242
++ S L+ I DEAD +L+LGF +D+E+I+D L
Sbjct: 472 IENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCL------------------P 513
Query: 243 TQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYS 302
QRQ+LL SAT+ ++V ++++ L+ DH+
Sbjct: 514 RQRQSLLFSATIPKEVRRVSQLVLKR--------------------DHS----------- 542
Query: 303 GKIPTVGDYKVPVQLIQRHVKV-------PCGSRLPVLLSILKHLFEREPSQKVVVFFST 355
I T+G + ++ H KV P S ++ +LK P K++VF ST
Sbjct: 543 -YIDTIG-----LGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCST 596
Query: 356 CDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSA 415
Y+LL+ K + + +H Q +R FK N
Sbjct: 597 GMVTSLMYTLLREMKLN-----------------VREIHARKPQLHRTRVSDEFKESNRL 639
Query: 416 LLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYL 475
+L+++DVSARG+++P V +IQ P + +Y+HR+GRT R G+ GE LL + P ER +L
Sbjct: 640 ILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFL 699
Query: 476 QDLEKHGVSLTEYPLLKVLDYFPLHGQSKHLKKSVFIDS-------HPWVLCLQKALESF 528
+L+ + P LD H + + K ID+ H W L ++
Sbjct: 700 DELKDLPLEPIPAP---DLDSIVKHQVDQSMAK---IDTSIKEAAYHAW-LGYYNSVRET 752
Query: 529 ITSKPKLDELAKRAFC 544
K L ELA R FC
Sbjct: 753 GRDKTTLAELANR-FC 767
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 195/422 (46%), Gaps = 71/422 (16%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNR---IQRSDGT 120
G T VQ + L G+ ALV A TGTGK++A+L P I + N + +
Sbjct: 394 GIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPI 453
Query: 121 FALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLR-KGISILIATPG 179
F L+L PTREL Q+ LL I ++GG ++ RL + ILIATPG
Sbjct: 454 FVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPG 513
Query: 180 RLLDHLKKTSSFV--YTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAV 237
RLLDH++ S L+ I DEAD +L+LGF +D+E+I+D L
Sbjct: 514 RLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCL-------------- 559
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDS 297
QRQ+LL SAT+ ++V ++++ L+ D I+ I
Sbjct: 560 ----PRQRQSLLFSATIPKEVRRVSQLVLKR------DHSYIDTIG-------------- 595
Query: 298 EEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCD 357
+G + ++ Q + P S ++ +LK P K++VF ST
Sbjct: 596 ----------LGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGM 645
Query: 358 AVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALL 417
Y+LL+ K + + +H Q +R FK N +L
Sbjct: 646 VTSLMYTLLREMKLN-----------------VREIHARKPQLHRTCVSDEFKESNRLIL 688
Query: 418 LSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQD 477
+++DVSARG+++P V +IQ P + +Y+HR+GRT R G+ G+ LL + P ER +L +
Sbjct: 689 VTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDE 748
Query: 478 LE 479
L+
Sbjct: 749 LK 750
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 199/422 (47%), Gaps = 90/422 (21%)
Query: 57 DQLRDRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYL--QSYDNRI 114
D L+++ G PT +Q Q +PVIL+GR + A TG+GKT+ ++ P+I + I
Sbjct: 159 DTLKEK-GIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPI 217
Query: 115 QRSDGTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGY-------IMGGENRSKEKARL 167
+G L++ P+REL Q YE++ + + + GY +GG + + +
Sbjct: 218 AAGEGPIGLIVCPSRELARQTYEVVEQFVAPL--VEAGYPPLRSLLCIGGIDMRSQLEVV 275
Query: 168 RKGISILIATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTR 227
++G+ I++ATPGRL D L K R++ DEADR+++LGF DI E+ D
Sbjct: 276 KRGVHIVVATPGRLKDMLAK-KKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHF---- 330
Query: 228 TGCDDQENAVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTAS 287
K+QRQ LL SAT+ K+ A+ +L PV + + + A+
Sbjct: 331 --------------KSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGR------AGAAN 370
Query: 288 LDHAEPDEDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQ 347
LD +IQ V +++ LL L+ + S
Sbjct: 371 LD---------------------------VIQEVEYVKQEAKIVYLLECLQ-----KTSP 398
Query: 348 KVVVFFST-CDAVDFH-YSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTS 405
V++F D D H Y LLK G + + +HG +QE+R +
Sbjct: 399 PVLIFCENKADVDDIHEYLLLK-------------------GVEAVAIHGGKDQEDREYA 439
Query: 406 FQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLL 465
+FK +L++TDV+++GLDFP ++ +I YD P E YVHR+GRT R G+ G +
Sbjct: 440 ISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATT 499
Query: 466 FL 467
F+
Sbjct: 500 FI 501
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 205/426 (48%), Gaps = 67/426 (15%)
Query: 61 DRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQ-----SYDNRIQ 115
+R G++ P+ +Q AIP+ L R + A TG+GKT A++ P++ Y+ S +N
Sbjct: 329 ERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEEN--- 385
Query: 116 RSDGTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILI 175
++G +A+V+ PTREL Q+ E VK H + V I+GG++ ++ ++ +G I+I
Sbjct: 386 ETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTS-IVGGQSIEEQGLKITQGCEIVI 444
Query: 176 ATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
ATPGRL+D L++ + V +++ DEADR++++GF + +LD + S+ +++E
Sbjct: 445 ATPGRLIDCLERRYA-VLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEE 503
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
+ K R + SAT+ V LA+ L NPV++
Sbjct: 504 EL-DEKKIYRTTYMFSATMPPGVERLARKYLRNPVVV----------------------- 539
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHV-KVPCGSRLPVLLSILKHLFEREPSQKVVVFFS 354
T+G LI +HV + + L +L L E+ +VF +
Sbjct: 540 -----------TIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEK----TAIVFVN 584
Query: 355 TCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENS 414
T D S+ K+ + Y ++ LHG QE R S + F+ +
Sbjct: 585 TKKNCD---SIAKNLDKAGY--------------RVTTLHGGKSQEQREISLEGFRAKRY 627
Query: 415 ALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDY 474
+L++TDV RG+D P V +I YD P Y HR+GRT R G+ G + FL + +
Sbjct: 628 NVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 687
Query: 475 LQDLEK 480
DL++
Sbjct: 688 FYDLKQ 693
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 125/417 (29%), Positives = 195/417 (46%), Gaps = 79/417 (18%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
G++ PT +Q + +P+ILSG + A TG+GKT A+L P++ L+ + + G AL
Sbjct: 47 GYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQ----GGVRAL 102
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
+L PTR+L Q + K L +F + ++GG++ + L KG ++IATPGRL+
Sbjct: 103 ILSPTRDLAEQTLK-FTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMH 161
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L + + +++FDEAD + +GF + + +IL L EN
Sbjct: 162 LLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLS---------EN-------- 204
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGLD-DKSIEPISTTASLDHAEPDEDSEEKYS 302
RQ LL SATL + AK L P ++ LD + I P S P EEKYS
Sbjct: 205 -RQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISP-DLKLSFLTVRP----EEKYS 258
Query: 303 GKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFH 362
+ L++ H+ Q+ ++F ST V+F
Sbjct: 259 ALL----------YLVREHI---------------------SSDQQTLIFVSTKHHVEFV 287
Query: 363 YSLLKSFKFSSY-PQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTD 421
SL FK + P + C +G+M+Q+ R+ F+ + LL+ TD
Sbjct: 288 NSL---FKLENIEPSV----------C-----YGDMDQDARKIHVSRFRARKTMLLIVTD 329
Query: 422 VSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDL 478
++ARG+D P + +I +D P +VHRVGR AR G G + F+ P + Y+ DL
Sbjct: 330 IAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDL 386
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/432 (28%), Positives = 193/432 (44%), Gaps = 72/432 (16%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYL--QSYDNRIQRSDGTF 121
GFE T+VQ +P+IL G+ L A TGTGKT+A+L P I + +R R
Sbjct: 401 GFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPII 460
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKG-ISILIATPGR 180
LV+ PTREL Q LL I ++GG E+ R++ IL+ATPGR
Sbjct: 461 VLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGR 520
Query: 181 LLDHLKKTSSFV--YTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVP 238
L DH++ TS F ++ ++ DEAD +L++GF +DIE I+ AVP
Sbjct: 521 LKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERII--------------AAVP 566
Query: 239 GASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSE 298
QRQ L SAT+ E+V + ++L+ D + I + + H
Sbjct: 567 ----KQRQTFLFSATVPEEVRQICHVALKR------DHEFINCVQEGSGETHQ------- 609
Query: 299 EKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDA 358
++ Q ++ +L +LK KV++F +T
Sbjct: 610 -----------------KVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMV 652
Query: 359 VDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLL 418
LL L + +H Q R F+ + +L+
Sbjct: 653 TRLVADLLSQ-----------------LSLNVREIHSRKPQSYRTRVSDEFRKSKAIILV 695
Query: 419 STDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDL 478
++DVSARG+D+P V ++Q P + +Y+HR+GRT R G++GE +L L P E ++ +
Sbjct: 696 TSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSV 755
Query: 479 EKHGVSLTEYPL 490
+ + +T+ PL
Sbjct: 756 KD--LPITKSPL 765
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 198/420 (47%), Gaps = 90/420 (21%)
Query: 59 LRDRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAP-IIHYLQ-SYDNRIQR 116
L+D+ G PT +Q Q +PV+LSGR + A TG+GKT+ ++ P II LQ I
Sbjct: 112 LKDK-GIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAA 170
Query: 117 SDGTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGY-------IMGGENRSKEKARLRK 169
+G ALV+ P+REL Q Y+++ + + + GY +GG + + ++K
Sbjct: 171 GEGPIALVICPSRELAKQTYDVVEQFVASL--VEDGYPRLRSLLCIGGVDMRSQLDVVKK 228
Query: 170 GISILIATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTG 229
G+ I++ATPGRL D L K R + DEADR+++LGF DI + D
Sbjct: 229 GVHIVVATPGRLKDILAK-KKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHF------ 281
Query: 230 CDDQENAVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLD 289
K+QRQ LL SAT+ K+ A +L PV + + + A+LD
Sbjct: 282 ------------KSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGR------AGAANLD 323
Query: 290 HAEPDEDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKV 349
+IQ V +++ LL L+ + + V
Sbjct: 324 ---------------------------VIQEVEYVKQEAKIVYLLECLQ-----KTTPPV 351
Query: 350 VVFF-STCDAVDFH-YSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQ 407
++F + D D H Y LLK G + + +HG +QE+R +
Sbjct: 352 LIFCENKADVDDIHEYLLLK-------------------GVEAVAIHGGKDQEDRDYAIS 392
Query: 408 AFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
FK +L++TDV+++GLDFP ++ +I YD PGE YVHR+GRT R G+ G + F+
Sbjct: 393 LFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFI 452
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 195/434 (44%), Gaps = 76/434 (17%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYL-----QSYDNRIQRSD 118
GF+ T+VQ +P+IL G+ L A TGTGKT+A+L P I + S DN R
Sbjct: 99 GFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDN---RHP 155
Query: 119 GTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKG-ISILIAT 177
LV+ PTREL Q LL I ++GG E+ RL+K IL+AT
Sbjct: 156 PIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVAT 215
Query: 178 PGRLLDHLKKTSSFV--YTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
PGRL DH+ TS F ++ ++ DEAD +L++GF ++IE I+
Sbjct: 216 PGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERII--------------A 261
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
AVP QRQ L SAT++++V + ++L+ D + + + A H +
Sbjct: 262 AVP----KQRQTFLFSATVSDEVRQICHVALKR------DHEFVNCVQEGAGETH----Q 307
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST 355
+ Y + + RH +L +LK KV++F +T
Sbjct: 308 KVSQMYM------------IASLDRH--------FSLLYGLLKKHITDNVGYKVIIFCTT 347
Query: 356 CDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSA 415
LL L + +H Q R F+ S
Sbjct: 348 AMVTRLVADLLGK-----------------LSLNVREIHSRKPQSYRTRVSDEFRKSKSI 390
Query: 416 LLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYL 475
+L+++DVSARG+D+P V ++Q P + +Y+HR+GRT R G++GE +L L P E +L
Sbjct: 391 ILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFL 450
Query: 476 QDLEKHGVSLTEYP 489
++ ++ + P
Sbjct: 451 SSVKDLPITKSSLP 464
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 191/399 (47%), Gaps = 79/399 (19%)
Query: 65 FEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFALV 124
+E PT +Q QA+P++LSGR + A TG+GKT A++ P+I ++ +QR +G ++
Sbjct: 248 YEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQ-PELQRDEGPIGVI 306
Query: 125 LVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDH 184
PTREL Q++ + K + + + + GG ++ ++ L+ G I++ATPGRL+D
Sbjct: 307 CAPTRELAHQIF-LEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDM 365
Query: 185 LKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQ 244
L K + +++ DEADR+ +LGF + I+ G +
Sbjct: 366 L-KMKALTMMRASYLVLDEADRMFDLGFEPQVRSIV------------------GQIRPD 406
Query: 245 RQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGK 304
RQ LL SAT+ KV LA+ L +P+ +
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRV-------------------------------- 434
Query: 305 IPTVGDYKVPVQLIQRHVKV-PCGS-RLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFH 362
TVG+ + + I + V V P + +LP LL L + + V+VF S VD
Sbjct: 435 --TVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDE---GDVLVFASKKATVD-- 487
Query: 363 YSLLKSFKFSSYPQIEEGDKQMFLGC-KILHLHGNMEQENRRTSFQAFKTENSALLLSTD 421
E + Q+ L K+ LHG+ +Q +R + Q FK+ +L++TD
Sbjct: 488 ----------------EIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATD 531
Query: 422 VSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEK 460
V+ARGLD ++ ++ YD + +VHR+GRT R G++
Sbjct: 532 VAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDR 570
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 125/415 (30%), Positives = 190/415 (45%), Gaps = 91/415 (21%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTF 121
+ GF PT +Q+Q P+ + GR + A TG+GKT++YL P I ++ + + DG
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA-QPMLAHGDGPI 174
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
LVL PTREL +Q+ + K I I GG + + L+KG+ I+IATPGRL
Sbjct: 175 VLVLAPTRELAVQIQQEASKFGSSSK-IKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRL 233
Query: 182 LDHLKKTSSFVYTNLR---WIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVP 238
+D ++ + TNLR +++ DEADR+L++GF I +I+ +
Sbjct: 234 IDMMESNN----TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHI--------------- 274
Query: 239 GASKTQRQNLLLSATLNEKVNHLAKISLENP--VMIGLDD----KSIEPISTTASLDHAE 292
+ RQ L SAT ++V L+K L NP V+IG D ++I I S
Sbjct: 275 ---RPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVIS----- 326
Query: 293 PDEDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVF 352
+KY+ +L++ + GSR+ V L K
Sbjct: 327 ----ESQKYN-------------KLVKLLEDIMDGSRILVFLDTKKG------------- 356
Query: 353 FSTCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTE 412
CD + + + +P L +HG+ Q R F++
Sbjct: 357 ---CDQI------TRQLRMDGWPA--------------LSIHGDKSQAERDWVLSEFRSG 393
Query: 413 NSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
S ++ +TDV+ARGLD V+ +I YD PG +YVHR+GRT R G KG + F
Sbjct: 394 KSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFF 448
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 195/435 (44%), Gaps = 78/435 (17%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYL-----QSYDNRIQRSD 118
G+E T+VQ +P+IL G+ L A TGTGKT+A+L P I + S DN +
Sbjct: 339 GYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN---KRP 395
Query: 119 GTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKG-ISILIAT 177
ALV+ PTREL Q LL I ++GG E+ R++ IL+AT
Sbjct: 396 PILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVAT 455
Query: 178 PGRLLDHLKKTSSFV--YTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
PGRL DH++ T F ++ ++ DEAD +L++GF KDIE I+ +
Sbjct: 456 PGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERII--------------S 501
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
AVP +RQ L SAT+ E+V + ++L DH E
Sbjct: 502 AVP----KERQTFLFSATVPEEVRQICLVALRR--------------------DH----E 533
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST 355
+ G I T Q+ Q H+ +L ++L+ KV+VF +T
Sbjct: 534 FVNCVHEGTIET------HQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFCTT 587
Query: 356 CDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSA 415
LL L + +H Q R F+
Sbjct: 588 AMVTKLVADLLGE-----------------LNLNVREIHSRKPQSYRTRVSNEFRKSKGL 630
Query: 416 LLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYL 475
+L+++DVSARG+D+P V ++Q P + +Y+HR+GRT R G++GE +L L P E +L
Sbjct: 631 ILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEEYFL 690
Query: 476 QDLEKHGVSLTEYPL 490
L+ + +T+ PL
Sbjct: 691 SSLKD--LPITKSPL 703
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 192/424 (45%), Gaps = 88/424 (20%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSY--DNRIQRSDGTF 121
GF APT +QAQ+ P+ + GR + A TG+GKT+ YL P +LQ D+R+ G
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM----GPT 232
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
LVL PTREL Q+ E VK R I + GG + + L +G I++ATPGRL
Sbjct: 233 ILVLSPTRELATQIQEEAVK-FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 182 LDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGAS 241
D L + + +++ DEADR+L++GF I +I+ +
Sbjct: 292 NDIL-EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI------------------ 332
Query: 242 KTQRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDEDSEE 299
T+RQ L+ +AT + V +A L NP V IG D+ + S T ++ P E
Sbjct: 333 PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK--- 389
Query: 300 KYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST---C 356
QR L IL+ +EP KV++F ST C
Sbjct: 390 -------------------QRR-----------LEQILR---SQEPGSKVIIFCSTKRMC 416
Query: 357 DAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSAL 416
D +L + F ++ +HG+ Q R F++ + +
Sbjct: 417 D--QLTRNLTRQFGAAA-------------------IHGDKSQPERDNVLNQFRSGRTPV 455
Query: 417 LLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQ 476
L++TDV+ARGLD +R ++ YD P +YVHR+GRT R G G++ F + +
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHAS 515
Query: 477 DLEK 480
DL K
Sbjct: 516 DLIK 519
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 192/424 (45%), Gaps = 88/424 (20%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSY--DNRIQRSDGTF 121
GF APT +QAQ+ P+ + GR + A TG+GKT+ YL P +LQ D+R+ G
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM----GPT 232
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
LVL PTREL Q+ E VK R I + GG + + L +G I++ATPGRL
Sbjct: 233 ILVLSPTRELATQIQEEAVK-FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 182 LDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGAS 241
D L + + +++ DEADR+L++GF I +I+ +
Sbjct: 292 NDIL-EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI------------------ 332
Query: 242 KTQRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDEDSEE 299
T+RQ L+ +AT + V +A L NP V IG D+ + S T ++ P E
Sbjct: 333 PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK--- 389
Query: 300 KYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST---C 356
QR L IL+ +EP KV++F ST C
Sbjct: 390 -------------------QRR-----------LEQILR---SQEPGSKVIIFCSTKRMC 416
Query: 357 DAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSAL 416
D +L + F ++ +HG+ Q R F++ + +
Sbjct: 417 D--QLTRNLTRQFGAAA-------------------IHGDKSQPERDNVLNQFRSGRTPV 455
Query: 417 LLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQ 476
L++TDV+ARGLD +R ++ YD P +YVHR+GRT R G G++ F + +
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHAS 515
Query: 477 DLEK 480
DL K
Sbjct: 516 DLIK 519
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 192/424 (45%), Gaps = 88/424 (20%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSY--DNRIQRSDGTF 121
GF APT +QAQ+ P+ + GR + A TG+GKT+ YL P +LQ D+R+ G
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM----GPT 232
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
LVL PTREL Q+ E VK R I + GG + + L +G I++ATPGRL
Sbjct: 233 ILVLSPTRELATQIQEEAVK-FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 182 LDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGAS 241
D L + + +++ DEADR+L++GF I +I+ +
Sbjct: 292 NDIL-EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI------------------ 332
Query: 242 KTQRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDEDSEE 299
T+RQ L+ +AT + V +A L NP V IG D+ + S T ++ P E
Sbjct: 333 PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK--- 389
Query: 300 KYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST---C 356
QR L IL+ +EP KV++F ST C
Sbjct: 390 -------------------QRR-----------LEQILR---SQEPGSKVIIFCSTKRMC 416
Query: 357 DAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSAL 416
D +L + F ++ +HG+ Q R F++ + +
Sbjct: 417 D--QLTRNLTRQFGAAA-------------------IHGDKSQPERDNVLNQFRSGRTPV 455
Query: 417 LLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQ 476
L++TDV+ARGLD +R ++ YD P +YVHR+GRT R G G++ F + +
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHAS 515
Query: 477 DLEK 480
DL K
Sbjct: 516 DLIK 519
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 192/424 (45%), Gaps = 88/424 (20%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSY--DNRIQRSDGTF 121
GF APT +QAQ+ P+ + GR + A TG+GKT+ YL P +LQ D+R+ G
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM----GPT 232
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
LVL PTREL Q+ E VK R I + GG + + L +G I++ATPGRL
Sbjct: 233 ILVLSPTRELATQIQEEAVK-FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 182 LDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGAS 241
D L + + +++ DEADR+L++GF I +I+ +
Sbjct: 292 NDIL-EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI------------------ 332
Query: 242 KTQRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDEDSEE 299
T+RQ L+ +AT + V +A L NP V IG D+ + S T ++ P E
Sbjct: 333 PTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEK--- 389
Query: 300 KYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST---C 356
QR L IL+ +EP KV++F ST C
Sbjct: 390 -------------------QRR-----------LEQILR---SQEPGSKVIIFCSTKRMC 416
Query: 357 DAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSAL 416
D +L + F ++ +HG+ Q R F++ + +
Sbjct: 417 D--QLTRNLTRQFGAAA-------------------IHGDKSQPERDNVLNQFRSGRTPV 455
Query: 417 LLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQ 476
L++TDV+ARGLD +R ++ YD P +YVHR+GRT R G G++ F + +
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHAS 515
Query: 477 DLEK 480
DL K
Sbjct: 516 DLIK 519
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 197/422 (46%), Gaps = 84/422 (19%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GF AP+ +QAQ+ P+ + R + A TG+GKT+ YL P +LQ N + G L
Sbjct: 180 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM--GPTIL 237
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ +K + I + GG + + + +G+ I++ATPGRL D
Sbjct: 238 VLSPTRELATQIQVEALK-FGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 296
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L+ ++ + +++ DEADR+L++GF I +I+ N VP T
Sbjct: 297 ILEMKRISLH-QVSYLVLDEADRMLDMGFEPQIRKIV--------------NEVP----T 337
Query: 244 QRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDEDSEEKY 301
+RQ L+ +AT ++V +A L NP V IG D+ + S T +++ P
Sbjct: 338 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAP-------- 389
Query: 302 SGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST---CDA 358
+++H SRL +L +EP K+++F ST CD
Sbjct: 390 ----------------MEKH------SRLEQILR------SQEPGSKIIIFCSTKRMCD- 420
Query: 359 VDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLL 418
+L ++F ++ +HG+ Q R F++ + +L+
Sbjct: 421 -QLARNLTRTFGAAA-------------------IHGDKSQAERDDVLNQFRSGRTPVLV 460
Query: 419 STDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDL 478
+TDV+ARGLD +R ++ YD P +YVHR+GRT R G G + F + + DL
Sbjct: 461 ATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDL 520
Query: 479 EK 480
K
Sbjct: 521 IK 522
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 197/422 (46%), Gaps = 84/422 (19%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GF AP+ +QAQ+ P+ + R + A TG+GKT+ YL P +LQ N + G L
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM--GPTIL 305
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ +K + I + GG + + + +G+ I++ATPGRL D
Sbjct: 306 VLSPTRELATQIQVEALK-FGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L+ ++ + +++ DEADR+L++GF I +I+ N VP T
Sbjct: 365 ILEMKRISLH-QVSYLVLDEADRMLDMGFEPQIRKIV--------------NEVP----T 405
Query: 244 QRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDEDSEEKY 301
+RQ L+ +AT ++V +A L NP V IG D+ + S T +++ P
Sbjct: 406 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAP-------- 457
Query: 302 SGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST---CDA 358
+++H SRL +L +EP K+++F ST CD
Sbjct: 458 ----------------MEKH------SRLEQILR------SQEPGSKIIIFCSTKRMCD- 488
Query: 359 VDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLL 418
+L ++F ++ +HG+ Q R F++ + +L+
Sbjct: 489 -QLARNLTRTFGAAA-------------------IHGDKSQAERDDVLNQFRSGRTPVLV 528
Query: 419 STDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDL 478
+TDV+ARGLD +R ++ YD P +YVHR+GRT R G G + F + + DL
Sbjct: 529 ATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDL 588
Query: 479 EK 480
K
Sbjct: 589 IK 590
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 194/432 (44%), Gaps = 77/432 (17%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
G E +Q + + GR + A TGTGKT+A+ PII + Y+ + R L
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL QV + + I + GG ++ +L G+ + + TPGR++D
Sbjct: 183 VLAPTRELARQVEKEFRESAPSLDTIC---LYGGTPIGQQMRQLDYGVDVAVGTPGRVID 239
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
+K+ + + +++++ DEAD++L++GF +D+E IL+ L
Sbjct: 240 LMKR-GALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL------------------PE 280
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSG 303
+RQ+++ SAT+ + L K L NP+ + L S + ++ D YS
Sbjct: 281 KRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLA------------DGITTYSI 328
Query: 304 KIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTC-DAVDFH 362
+ G + L+ H K K +VF T DA
Sbjct: 329 IADSYGRASIIGPLVTEHAK----------------------GGKCIVFTQTKRDADRLS 366
Query: 363 YSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDV 422
Y+L +SFK C+ LHG++ Q R + F+ + +L++TDV
Sbjct: 367 YALARSFK-----------------CE--ALHGDISQSQRERTLAGFRDGHFNILVATDV 407
Query: 423 SARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKH- 481
+ARGLD P V II Y+ P +VHR GRT R G+KG ++L + ++ +E+
Sbjct: 408 AARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREV 467
Query: 482 GVSLTEYPLLKV 493
G TE P + V
Sbjct: 468 GSRFTELPSIAV 479
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 192/432 (44%), Gaps = 77/432 (17%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
G E +Q + + GR + A TGTGKT+A+ PII + ++ + R L
Sbjct: 135 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCL 194
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL QV + + I + GG ++ L GI + + TPGR++D
Sbjct: 195 VLAPTRELARQVEKEFRESAPSLDTIC---LYGGTPIGQQMRELNYGIDVAVGTPGRIID 251
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
+K+ + + +++++ DEAD++L++GF +D+E IL L
Sbjct: 252 LMKR-GALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL------------------PA 292
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSG 303
+RQ+++ SAT+ + L K L NP+ I L S + ++ D YS
Sbjct: 293 KRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLA------------DGITMYSI 340
Query: 304 KIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTC-DAVDFH 362
+ G + L++ H K K +VF T DA
Sbjct: 341 AADSYGRASIIGPLVKEHGK----------------------GGKCIVFTQTKRDADRLA 378
Query: 363 YSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDV 422
+ L KS+K C+ LHG++ Q R + F+ N ++L++TDV
Sbjct: 379 FGLAKSYK-----------------CE--ALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 423 SARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKH- 481
+ARGLD P V +I Y+ P +VHR GRT R G+KG ++L + ++ +EK
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEV 479
Query: 482 GVSLTEYPLLKV 493
G E P + V
Sbjct: 480 GSRFNELPSIAV 491
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 191/416 (45%), Gaps = 77/416 (18%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT- 120
R + PT VQ AIP++L GR + A TG+GKT A+ PII + D +QR G+
Sbjct: 176 RCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMK-DQHVQRPRGSR 234
Query: 121 ----FALVLVPTRELCLQVYEILVKLLHRFHW-IVPGYIMGGENRSKEKARLRKGISILI 175
A++L PTREL Q+++ K ++ +V Y GG +++ L +G+ IL+
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAY--GGTPINQQLRELERGVDILV 292
Query: 176 ATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
ATPGRL D L++ + +R++ DEADR+L++GF I +I++ + G
Sbjct: 293 ATPGRLNDLLER-ARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGV----- 346
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
RQ LL SAT ++ LA L N + + +
Sbjct: 347 ---------RQTLLFSATFPREIQRLAADFLANYIFLAV--------------------- 376
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQK---VVVF 352
G++ + D ++QR V + L+ +L E K +VF
Sbjct: 377 -------GRVGSSTDL-----IVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVF 424
Query: 353 FSTCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTE 412
T D SL + +P +HG+ Q+ R + +AFK+
Sbjct: 425 VETKRGAD---SLENWLCINGFPATS--------------IHGDRTQQEREVALKAFKSG 467
Query: 413 NSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQ 468
+ +L++TDV+ARGLD P V ++ +D P + +YVHR+GRT R G+ G + F
Sbjct: 468 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN 523
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 191/413 (46%), Gaps = 75/413 (18%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT- 120
R + PT VQ AIP++L+ R + A TG+GKT A+ PII + D ++R G+
Sbjct: 168 RCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMK-DQHVERPRGSR 226
Query: 121 ----FALVLVPTRELCLQVYEILVKLLHRFHW-IVPGYIMGGENRSKEKARLRKGISILI 175
FA++L PTREL Q+++ K ++ +V Y GG ++ L +G IL+
Sbjct: 227 AVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAY--GGTPIHQQLRELERGCDILV 284
Query: 176 ATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
ATPGRL D L++ + +R++ DEADR+L++GF I +I++ + G
Sbjct: 285 ATPGRLNDLLER-ARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGV----- 338
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
RQ +L SAT ++ LA + N + + +
Sbjct: 339 ---------RQTMLFSATFPSQIQRLAADFMSNYIFLAV--------------------- 368
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKV-VVFFS 354
G++ + D + QR V + L+ +L E + Q + +VF
Sbjct: 369 -------GRVGSSTDL-----ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVE 416
Query: 355 TCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENS 414
T D +L + +P +HG+ Q+ R + ++FKT +
Sbjct: 417 TKRGAD---TLENWLCMNEFPATS--------------IHGDRTQQEREVALRSFKTGRT 459
Query: 415 ALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
+L++TDV+ARGLD P V ++ +D P + +YVHR+GRT R G+ G + F
Sbjct: 460 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 512
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 191/413 (46%), Gaps = 75/413 (18%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT- 120
R + PT VQ AIP++L+ R + A TG+GKT A+ PII + D ++R G+
Sbjct: 168 RCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMK-DQHVERPRGSR 226
Query: 121 ----FALVLVPTRELCLQVYEILVKLLHRFHW-IVPGYIMGGENRSKEKARLRKGISILI 175
FA++L PTREL Q+++ K ++ +V Y GG ++ L +G IL+
Sbjct: 227 AVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAY--GGTPIHQQLRELERGCDILV 284
Query: 176 ATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
ATPGRL D L++ + +R++ DEADR+L++GF I +I++ + G
Sbjct: 285 ATPGRLNDLLER-ARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGV----- 338
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
RQ +L SAT ++ LA + N + + +
Sbjct: 339 ---------RQTMLFSATFPSQIQRLAADFMSNYIFLAV--------------------- 368
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKV-VVFFS 354
G++ + D + QR V + L+ +L E + Q + +VF
Sbjct: 369 -------GRVGSSTDL-----ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVE 416
Query: 355 TCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENS 414
T D +L + +P +HG+ Q+ R + ++FKT +
Sbjct: 417 TKRGAD---TLENWLCMNEFPATS--------------IHGDRTQQEREVALRSFKTGRT 459
Query: 415 ALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
+L++TDV+ARGLD P V ++ +D P + +YVHR+GRT R G+ G + F
Sbjct: 460 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 512
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 191/413 (46%), Gaps = 75/413 (18%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT- 120
R + PT VQ AIP++L+ R + A TG+GKT A+ PII + D ++R G+
Sbjct: 168 RCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMK-DQHVERPRGSR 226
Query: 121 ----FALVLVPTRELCLQVYEILVKLLHRFHW-IVPGYIMGGENRSKEKARLRKGISILI 175
FA++L PTREL Q+++ K ++ +V Y GG ++ L +G IL+
Sbjct: 227 AVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAY--GGTPIHQQLRELERGCDILV 284
Query: 176 ATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
ATPGRL D L++ + +R++ DEADR+L++GF I +I++ + G
Sbjct: 285 ATPGRLNDLLER-ARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGV----- 338
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
RQ +L SAT ++ LA + N + + +
Sbjct: 339 ---------RQTMLFSATFPSQIQRLAADFMSNYIFLAV--------------------- 368
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKV-VVFFS 354
G++ + D + QR V + L+ +L E + Q + +VF
Sbjct: 369 -------GRVGSSTDL-----ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVE 416
Query: 355 TCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENS 414
T D +L + +P +HG+ Q+ R + ++FKT +
Sbjct: 417 TKRGAD---TLENWLCMNEFPATS--------------IHGDRTQQEREVALRSFKTGRT 459
Query: 415 ALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
+L++TDV+ARGLD P V ++ +D P + +YVHR+GRT R G+ G + F
Sbjct: 460 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 512
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/434 (27%), Positives = 205/434 (47%), Gaps = 47/434 (10%)
Query: 61 DRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYL--------QSYDN 112
+R GF PT VQ+ A+P I+ G A++ + TG+GKT+AYL PI+ + S+
Sbjct: 126 EREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSE 185
Query: 113 RIQRSDGTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKG-I 171
+R++ A+++ P+REL +Q+ + KLL H + ++GG NR +++ L+K
Sbjct: 186 NDKRTE-IQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKP 244
Query: 172 SILIATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCD 231
+I++ TPGR+ + + K R+++ DE D +L F +DI IL+ +G R+G
Sbjct: 245 AIVVGTPGRIAE-ISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGK-RSGAG 302
Query: 232 DQENAVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDD----KSIEPISTTAS 287
+ + RQ +L+SAT+ V AK PV++ + +++P + S
Sbjct: 303 PKGEV---DERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMS 359
Query: 288 LDHAEPDEDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQ 347
L + D G+I T +P L + C S+ + L+ +Q
Sbjct: 360 LTPTTSEAD------GQIQTT-IQSLPPALKHYY----CISKHQHKVDTLRRCVHALDAQ 408
Query: 348 KVVVFFSTCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQ 407
V+ F + H LK + K G +HG++ + R T +
Sbjct: 409 SVIAFMN-------HSRQLKDVVY----------KLEARGMNSAEMHGDLGKLGRSTVLK 451
Query: 408 AFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
FK +L++ ++SARGLD + ++ + P +A Y HR GRT RLG KG +
Sbjct: 452 KFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVC 511
Query: 468 QPIERDYLQDLEKH 481
+ + ++ +EK
Sbjct: 512 EESQVFIVKKMEKQ 525
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 188/416 (45%), Gaps = 77/416 (18%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT- 120
R + PT VQ AIP++ +GR + A TG+GKT A+ PII + D I+R G
Sbjct: 163 RCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMK-DQHIERPRGVR 221
Query: 121 ----FALVLVPTRELCLQVYEILVKLLHRFHW-IVPGYIMGGENRSKEKARLRKGISILI 175
A++L PTREL Q+++ K ++ +V Y GG +++ L +G+ IL+
Sbjct: 222 GVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAY--GGTPVNQQIRELERGVDILV 279
Query: 176 ATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
ATPGRL D L++ + +R++ DEADR+L++GF I +I+ + G
Sbjct: 280 ATPGRLNDLLERGRVSLQM-VRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGV----- 333
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
RQ +L SAT ++ LA L N + + +
Sbjct: 334 ---------RQTMLFSATFPREIQRLASDFLSNYIFLAV--------------------- 363
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQK---VVVF 352
G++ + D ++QR V + L+ +L E K +VF
Sbjct: 364 -------GRVGSSTDL-----IVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVF 411
Query: 353 FSTCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTE 412
T D SL + +P +HG+ Q+ R + ++FKT
Sbjct: 412 VETKKGAD---SLENWLCINGFPATT--------------IHGDRSQQEREVALRSFKTG 454
Query: 413 NSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQ 468
+ +L++TDV+ARGLD P V ++ +D P + +YVHR+GRT R G G + F
Sbjct: 455 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFN 510
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 188/421 (44%), Gaps = 82/421 (19%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GF +PT +QAQ P+ L R + A TG+GKT+ YL P L+ N +G L
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRN--DSRNGPTVL 511
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
+L PTREL Q+ + ++ R I + GG + + L +G I++ATPGRL D
Sbjct: 512 ILAPTRELATQIQDEALR-FGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Query: 184 HLK-KTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASK 242
L+ K F +L ++ DEADR+L++GF I +I+ N +P
Sbjct: 571 ILEMKMIDFQQVSL--LVLDEADRMLDMGFEPQIRKIV--------------NEIP---- 610
Query: 243 TQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYS 302
+RQ L+ +AT ++V +A L NPV + +
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNI---------------------------- 642
Query: 303 GKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST---CDAV 359
G++ + K Q ++ VP + L IL+ +E KV++F ST CD
Sbjct: 643 GRVDELAANKAITQYVE---VVPQMEKERRLEQILR---SQERGSKVIIFCSTKRLCD-- 694
Query: 360 DFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLS 419
H + F + + +HG+ Q R F++ S +L++
Sbjct: 695 --HLARSVGRHFGA-----------------VVIHGDKTQGERDWVLNQFRSGKSCVLIA 735
Query: 420 TDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLE 479
TDV+ARGLD +R +I YD P +YVHR+GRT R G G + F + Y DL
Sbjct: 736 TDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLI 795
Query: 480 K 480
K
Sbjct: 796 K 796
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 192/421 (45%), Gaps = 80/421 (19%)
Query: 65 FEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRI---QRSDGTF 121
FE P+ +Q+ P +L GR + A TG+GKT+A+ P I ++ + +I +
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
LVL PTREL +Q+ ++L + + + GG ++ + + +R G+ I+I TPGRL
Sbjct: 194 CLVLSPTRELAVQISDVL-REAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRL 252
Query: 182 LDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGAS 241
D L +++ +++ +++ DEADR+L++GF + + IL N V
Sbjct: 253 RD-LIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFIL-----------SNTNKV---- 296
Query: 242 KTQRQNLLLSATLNEKVNHLAKISLE-NPVMIGLDDKSIEPISTTASLDHAEPDEDSEEK 300
RQ ++ SAT V+ LA+ ++ NP+ + +
Sbjct: 297 ---RQMVMFSATWPLDVHKLAQEFMDPNPIKVII-------------------------- 327
Query: 301 YSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVD 360
G + ++ V + I++ L ER Q+++
Sbjct: 328 --GSVDLAANHDV--------------------MQIIEVLDERARDQRLIALLEK----- 360
Query: 361 FHYSLLKSFKFSSYPQIEEGDKQMFL---GCKILHLHGNMEQENRRTSFQAFKTENSALL 417
+H S + ++E + FL G K + +HGN Q R S FK + LL
Sbjct: 361 YHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLL 420
Query: 418 LSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQD 477
++TDV+ARGLD P V +I Y P +YVHR+GRT R G+KG + F P+ + +
Sbjct: 421 VATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGE 480
Query: 478 L 478
L
Sbjct: 481 L 481
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 189/415 (45%), Gaps = 60/415 (14%)
Query: 68 PTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYD--NRIQRSDGTFALVL 125
P + IP+ L R + +ATG+GKT A++ P++ Y+ +++G +ALV+
Sbjct: 225 PMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVM 284
Query: 126 VPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHL 185
VPTREL Q+ E VK R+ I G E+ K+ +L +G I+IATPGRLLD L
Sbjct: 285 VPTRELAHQIEEETVKF-SRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCL 343
Query: 186 KKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQR 245
++ V +++ DEADR++++ F + E+LD++ + ++E+ K R
Sbjct: 344 ER-RYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKP-EKEDEELEEKKIYR 401
Query: 246 QNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGKI 305
+ SAT+ V LA+ L NPV++ + + + T + E D+ S + I
Sbjct: 402 TTYMFSATMLLSVERLARKFLRNPVVVTIGETT--KFITQQVIMTKESDKFS--RLKKLI 457
Query: 306 PTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSL 365
+GD K +VF +T + VD+
Sbjct: 458 DDLGDDKT-----------------------------------AIVFVNTRNKVDYIVKN 482
Query: 366 LKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSAR 425
L+ C++ LH QE R S + FK + +L++TDV R
Sbjct: 483 LEKVG----------------RCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLGR 526
Query: 426 GLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK 480
GLD + +I YD P Y HR+GRT R G+ G + FL ++D L++
Sbjct: 527 GLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLKQ 581
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 180/421 (42%), Gaps = 78/421 (18%)
Query: 63 LGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFA 122
LG PT VQ +P IL+GR L A TG+GKT A+ PI+H L + G FA
Sbjct: 76 LGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLA------EDPYGVFA 129
Query: 123 LVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLL 182
LV+ PTREL Q+ E K L + I+GG + + L I+I TPGR+
Sbjct: 130 LVVTPTRELAFQLAEQF-KALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIK 188
Query: 183 DHLKKTSSF--VYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGA 240
L+ V++ ++++ DEADR+L++GF ++ I L +
Sbjct: 189 VLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKS-------------- 234
Query: 241 SKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEK 300
RQ LL SAT+ + L L+H+ E
Sbjct: 235 ----RQTLLFSATMTSNLQAL--------------------------LEHSSNKAYFYEA 264
Query: 301 YSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVD 360
Y G K L Q+ + ++ L+ IL + E + + ++F STC
Sbjct: 265 YEG-------LKTVDTLTQQFIFEDKDAKELYLVHILSQM-EDKGIRSAMIFVSTCRTCQ 316
Query: 361 FHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLST 420
+L + + + +H Q R ++ FK+ +LL+T
Sbjct: 317 RLSLMLDELEVEN-----------------IAMHSLNSQSMRLSALSKFKSGKVPILLAT 359
Query: 421 DVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK 480
DV++RGLD P V +I YD P + +YVHRVGRTAR G G ++ + + + +E+
Sbjct: 360 DVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
Query: 481 H 481
Sbjct: 420 E 420
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 164/372 (44%), Gaps = 93/372 (25%)
Query: 61 DRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT 120
DR GFE T VQA+ IP + S + +V+AATG+GKT+A+L P I ++ ++ +
Sbjct: 33 DRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQV 92
Query: 121 FALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGR 180
+++ PTREL Q++++ + R + + N +E+ G ++LI TPGR
Sbjct: 93 MGVIISPTRELSAQIHKVARAV--RLDFAKCREVEADMNTLEEE-----GANLLIGTPGR 145
Query: 181 LLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGA 240
L D +K+ + NL +I DEADR+L++GF K + I+ L
Sbjct: 146 LSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL----------------- 188
Query: 241 SKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEK 300
QR+ L SAT + V LAK L NP + E D+ S +
Sbjct: 189 -PKQRRTGLFSATQTQAVADLAKAGLRNPYL------------------KCEADQKSSQ- 228
Query: 301 YSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVD 360
L HL ++K+VVFF TC VD
Sbjct: 229 ------------------------------------LVHLLIENKNKKLVVFFMTCACVD 252
Query: 361 FHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLST 420
+ + L+ S P ++ HG M+Q+ R T+ +F +S +LL T
Sbjct: 253 Y-WGLV----ISKIPSLK--------SISFFPTHGKMDQKGRDTALASFTEASSGVLLCT 299
Query: 421 DVSARGLDFPKV 432
DV+ARGLD P +
Sbjct: 300 DVAARGLDIPGI 311
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 194/415 (46%), Gaps = 81/415 (19%)
Query: 71 VQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYL--QSYDNRIQRSDGTFA--LVLV 126
V+A +P L GR + A TGTGKT+A+ PII L ++ D R G LVL
Sbjct: 36 VRAVLVPA-LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLA 94
Query: 127 PTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLK 186
PTREL QV + ++ ++ + GG + + +++ L +G+ +++ TPGR++D L
Sbjct: 95 PTRELAKQVEK---EIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIID-LI 150
Query: 187 KTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQRQ 246
+ S + +++ DEAD++L +GF + +E IL+ L T+RQ
Sbjct: 151 EGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL------------------PTKRQ 192
Query: 247 NLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGKIP 306
++L SAT+ V LA+ L+NP+ I L D +EK +
Sbjct: 193 SMLFSATMPTWVKKLARKYLDNPLNIDLVG-------------------DQDEKLA---- 229
Query: 307 TVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTC-DAVDFHYSL 365
+ I+ + + +LS L ++ + K +VF T DA + +L
Sbjct: 230 ---------EGIKLYAIATTSTSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLAL 278
Query: 366 LKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSAR 425
S + LHG++ Q R + AF+ +L++TDV++R
Sbjct: 279 SNSIATEA-------------------LHGDISQHQRERTLNAFRQGKFTVLVATDVASR 319
Query: 426 GLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK 480
GLD P V +I Y+ P + +VHR GRT R G++G ++L ++ ++ LE+
Sbjct: 320 GLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 374
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 192/415 (46%), Gaps = 80/415 (19%)
Query: 71 VQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYL--QSYDNRIQRSDGTFA--LVLV 126
+Q + L GR + A TGTGKT+A+ PII L ++ D R G LVL
Sbjct: 128 IQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLA 187
Query: 127 PTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLK 186
PTREL QV + ++ ++ + GG + + +++ L +G+ +++ TPGR++D L
Sbjct: 188 PTRELAKQVEK---EIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIID-LI 243
Query: 187 KTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQRQ 246
+ S + +++ DEAD++L +GF + +E IL+ L T+RQ
Sbjct: 244 EGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL------------------PTKRQ 285
Query: 247 NLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGKIP 306
++L SAT+ V LA+ L+NP+ I L D +EK +
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVG-------------------DQDEKLA---- 322
Query: 307 TVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTC-DAVDFHYSL 365
+ I+ + + +LS L ++ + K +VF T DA + +L
Sbjct: 323 ---------EGIKLYAIATTSTSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLAL 371
Query: 366 LKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSAR 425
S + LHG++ Q R + AF+ +L++TDV++R
Sbjct: 372 SNSIATEA-------------------LHGDISQHQRERTLNAFRQGKFTVLVATDVASR 412
Query: 426 GLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK 480
GLD P V +I Y+ P + +VHR GRT R G++G ++L ++ ++ LE+
Sbjct: 413 GLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 467
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 192/415 (46%), Gaps = 80/415 (19%)
Query: 71 VQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYL--QSYDNRIQRSDGTFA--LVLV 126
+Q + L GR + A TGTGKT+A+ PII L ++ D R G LVL
Sbjct: 128 IQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLA 187
Query: 127 PTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLK 186
PTREL QV + ++ ++ + GG + + +++ L +G+ +++ TPGR++D L
Sbjct: 188 PTRELAKQVEK---EIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIID-LI 243
Query: 187 KTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQRQ 246
+ S + +++ DEAD++L +GF + +E IL+ L T+RQ
Sbjct: 244 EGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL------------------PTKRQ 285
Query: 247 NLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGKIP 306
++L SAT+ V LA+ L+NP+ I L D +EK +
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVG-------------------DQDEKLA---- 322
Query: 307 TVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTC-DAVDFHYSL 365
+ I+ + + +LS L ++ + K +VF T DA + +L
Sbjct: 323 ---------EGIKLYAIATTSTSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLAL 371
Query: 366 LKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSAR 425
S + LHG++ Q R + AF+ +L++TDV++R
Sbjct: 372 SNSIATEA-------------------LHGDISQHQRERTLNAFRQGKFTVLVATDVASR 412
Query: 426 GLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK 480
GLD P V +I Y+ P + +VHR GRT R G++G ++L ++ ++ LE+
Sbjct: 413 GLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 467
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 173/374 (46%), Gaps = 89/374 (23%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTF 121
+LGF PT +QAQ P+ L GR + A TG+GKT+AYL P + ++ S R+ + DG
Sbjct: 182 KLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHV-SAQPRLGQDDGPI 240
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
L+L PTREL +Q+ E K R + I GG + + LR+G+ I+IATPGRL
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLR-SGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 299
Query: 182 LDHLKKTSSFVYTNLR---WIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVP 238
+D L+ +TNL+ +++ DEADR+L++GF I +I+ +
Sbjct: 300 IDMLE----CQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI--------------- 340
Query: 239 GASKTQRQNLLLSATLNEKVNHLAKISLENP--VMIGLDDKSIEPISTTASLDHAEPDED 296
+ RQ LL SAT +V LA+ L +P +IG D + S++
Sbjct: 341 ---RPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTD-----LKANQSIN------- 385
Query: 297 SEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFST- 355
Q+I+ VP + LL++LK L + K+++F T
Sbjct: 386 -------------------QVIE---IVPTPEKYNRLLTLLKQLMD---GSKILIFVETK 420
Query: 356 --CDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTEN 413
CD V + + +P L +HG+ Q R FK+
Sbjct: 421 RGCDQV------TRQLRMDGWP--------------ALAIHGDKTQSERDRVLAEFKSGR 460
Query: 414 SALLLSTDVSARGL 427
S ++ +TDV+ARGL
Sbjct: 461 SPIMTATDVAARGL 474
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 187/428 (43%), Gaps = 84/428 (19%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q ++IP+ L+GR L A GTGKT A+ P++ + +N IQ A+
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ------AV 203
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
++VPTREL LQ ++ K L + I GG + + RL + + +L+ TPGR+LD
Sbjct: 204 IIVPTRELALQTSQV-CKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L K V + ++ DEAD++L F +E ++ L +
Sbjct: 263 -LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPES----------------- 304
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGL-DDKSIEPISTTASLDHAEPDEDSEEKYS 302
RQ L+ SAT V L NP +I L D+ +++ I+ +
Sbjct: 305 -RQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYA--------------- 348
Query: 303 GKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFH 362
++ K+ C L LF + + ++F C++V+
Sbjct: 349 --------------FVEERQKIHC----------LNTLFSKLQINQSIIF---CNSVNRV 381
Query: 363 YSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDV 422
L K +I E LG ++H M Q++R F F+ L+ TD+
Sbjct: 382 ELLAK--------KITE------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 427
Query: 423 SARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKH- 481
RG+D V +I +D P A Y+HRVGR+ R G G ++ + +R L +E+
Sbjct: 428 FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL 487
Query: 482 GVSLTEYP 489
G + + P
Sbjct: 488 GTEIKQIP 495
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 187/428 (43%), Gaps = 84/428 (19%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q ++IP+ L+GR L A GTGKT A+ P++ + +N IQ A+
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ------AV 203
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
++VPTREL LQ ++ K L + I GG + + RL + + +L+ TPGR+LD
Sbjct: 204 IIVPTRELALQTSQV-CKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L K V + ++ DEAD++L F +E ++ L +
Sbjct: 263 -LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPES----------------- 304
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGL-DDKSIEPISTTASLDHAEPDEDSEEKYS 302
RQ L+ SAT V L NP +I L D+ +++ I+ +
Sbjct: 305 -RQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYA--------------- 348
Query: 303 GKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFH 362
++ K+ C L LF + + ++F C++V+
Sbjct: 349 --------------FVEERQKIHC----------LNTLFSKLQINQSIIF---CNSVNRV 381
Query: 363 YSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDV 422
L K +I E LG ++H M Q++R F F+ L+ TD+
Sbjct: 382 ELLAK--------KITE------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 427
Query: 423 SARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKH- 481
RG+D V +I +D P A Y+HRVGR+ R G G ++ + +R L +E+
Sbjct: 428 FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL 487
Query: 482 GVSLTEYP 489
G + + P
Sbjct: 488 GTEIKQIP 495
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 172/398 (43%), Gaps = 81/398 (20%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q ++IP+ L+G L A GTGKT A+ P + + +N IQ A+
Sbjct: 173 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ------AV 226
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
+LVPTREL LQ ++ K L ++ I GG + + RL + + +L+ TPGR+LD
Sbjct: 227 ILVPTRELALQTSQV-CKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILD 285
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L K V + ++ DEAD++L + F IEE++ L +
Sbjct: 286 -LAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPES----------------- 327
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSG 303
RQ L+ SAT V L+ P +I L D+
Sbjct: 328 -RQILMFSATFPVTVKSFKDRYLKKPYIINLMDQLT------------------------ 362
Query: 304 KIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHY 363
+ V Y ++ KV C L LF + + ++F C++V+
Sbjct: 363 -LMGVTQYYA---FVEERQKVHC----------LNTLFSKLQINQSIIF---CNSVNRVE 405
Query: 364 SLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVS 423
L K +I E LG ++H M Q++R F F+ L+ TD+
Sbjct: 406 LLAK--------KITE------LGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLF 451
Query: 424 ARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKG 461
RG+D V +I +D P + Y+HRVGR+ R G G
Sbjct: 452 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLG 489
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 170/398 (42%), Gaps = 81/398 (20%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q ++IP+ L+G L A GTGKT A+ P++ + +N IQ A+
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ------AM 196
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
+LVPTREL LQ ++ K L ++ I GG + + RL + + +L+ TPGR+LD
Sbjct: 197 ILVPTRELALQTSQV-CKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L K V + ++ DEAD++L F +EE++ L
Sbjct: 256 -LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFL------------------PQ 296
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSG 303
RQ L+ SAT V L P +I L D+
Sbjct: 297 NRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLT------------------------ 332
Query: 304 KIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHY 363
+ V Y ++ KV C L LF + + ++F C++V+
Sbjct: 333 -LMGVTQYYA---FVEERQKVHC----------LNTLFSKLQINQSIIF---CNSVNRVE 375
Query: 364 SLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVS 423
L K +I E LG ++H M Q++R F F+ L+ TD+
Sbjct: 376 LLAK--------KITE------LGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLF 421
Query: 424 ARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKG 461
RG+D V +I +D P + Y+HRVGR+ R G G
Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLG 459
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 170/398 (42%), Gaps = 81/398 (20%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q ++IP+ L+G L A GTGKT A+ P++ + +N IQ A+
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ------AM 196
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
+LVPTREL LQ ++ K L ++ I GG + + RL + + +L+ TPGR+LD
Sbjct: 197 ILVPTRELALQTSQV-CKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L K V + ++ DEAD++L F +EE++ L
Sbjct: 256 -LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFL------------------PQ 296
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSG 303
RQ L+ SAT V L P +I L D+
Sbjct: 297 NRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLT------------------------ 332
Query: 304 KIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHY 363
+ V Y ++ KV C L LF + + ++F C++V+
Sbjct: 333 -LMGVTQYYA---FVEERQKVHC----------LNTLFSKLQINQSIIF---CNSVNRVE 375
Query: 364 SLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVS 423
L K +I E LG ++H M Q++R F F+ L+ TD+
Sbjct: 376 LLAK--------KITE------LGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLF 421
Query: 424 ARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKG 461
RG+D V +I +D P + Y+HRVGR+ R G G
Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLG 459
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 193/417 (46%), Gaps = 93/417 (22%)
Query: 63 LGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDG--- 119
L E PT +Q IP ++ + ++ + TG+GKT+AYL PI+ ++ + + +
Sbjct: 130 LNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRR 189
Query: 120 TFALVLVPTRELCLQVYEILVKLLH--RFHWIVPGYIMGGENRSKEKARLRKGISILIAT 177
+VL PTREL QVY + + H RF I+ + GG ++ L I +++ T
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSIL---VSGGSRIRPQEDSLNNAIDMVVGT 246
Query: 178 PGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAV 237
PGR+L H+++ + VY ++ +++ DEAD + + GFG +I + L L +DQ
Sbjct: 247 PGRILQHIEE-GNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGF-- 303
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDS 297
Q +L++AT+ V L + + + IE + T+
Sbjct: 304 --------QTVLVTATMTMAVQKL----------VDEEFQGIEHLRTST----------- 334
Query: 298 EEKYSGKIPTVGDYKVPVQLIQRH--VKVPCGS-RLPVLLSILKHLFEREPS----QKVV 350
KI RH +K+ G +L LL +L EPS KV+
Sbjct: 335 ---LHKKIANA-----------RHDFIKLSGGEDKLEALLQVL------EPSLAKGSKVM 374
Query: 351 VFFSTCD---AVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQ 407
VF +T + AVD HY L + S+ ++ HG + E R + +
Sbjct: 375 VFCNTLNSSRAVD-HY--LSENQIST-----------------VNYHGEVPAEQRVENLK 414
Query: 408 AFKTE--NSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGE 462
FK E + L+ TD++ARGLD V ++ +D P + +Y+HR GRTAR+G KG+
Sbjct: 415 KFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGK 470
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 107/430 (24%), Positives = 187/430 (43%), Gaps = 84/430 (19%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q +A+ IL GR + A +GTGKT + + + +Q AL
Sbjct: 54 GFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ------AL 107
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
+L PTREL Q E ++ + I +GG + ++ +L G+ ++ TPGR+ D
Sbjct: 108 ILSPTRELATQT-EKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCD 166
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
+K+ S ++ +I DE+D +L GF I ++ L C
Sbjct: 167 MIKR-RSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVC------------- 212
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPV--MIGLDDKSIEPISTTASLDHAEPDEDSEEKY 301
L+SATL ++ + + PV ++ D+ ++E I + EK
Sbjct: 213 -----LVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFV---------AVEKE 258
Query: 302 SGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDF 361
K T+ D L++ + V+F +T VD+
Sbjct: 259 EWKFDTLCD-----------------------------LYDTLTITQAVIFCNTKRKVDY 289
Query: 362 HYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTD 421
++S F+ + +HG+M Q+ R F++ +S +L++TD
Sbjct: 290 LSEKMRSHNFT-----------------VSSMHGDMPQKERDAIMNEFRSGDSRVLITTD 332
Query: 422 VSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK- 480
V ARG+D +V +I YD P Y+HR+GR+ R G KG ++ F++ + L+D+E+
Sbjct: 333 VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQY 392
Query: 481 HGVSLTEYPL 490
+ + E P+
Sbjct: 393 YSTQIDEMPM 402
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 183/410 (44%), Gaps = 79/410 (19%)
Query: 59 LRDRL---GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQ 115
LR++L G EA +QA ++L G + A TG GKT+A++ PI+ L + + +
Sbjct: 107 LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSK 166
Query: 116 RSDG----TFALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGI 171
R G LVL+PTREL QV + + GG++ ++ +L++G+
Sbjct: 167 RKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSL-GLSSCCLYGGDSYPVQEGKLKRGV 225
Query: 172 SILIATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCD 231
I++ TPGR+ DH+++ + ++ L++ + DEAD +L +GF +D+E IL + +
Sbjct: 226 DIVVGTPGRIKDHIER-QNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDS----- 279
Query: 232 DQENAVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHA 291
T+ Q LL SATL V +++ L+ D K+I+
Sbjct: 280 -----------TKVQTLLFSATLPSWVKNISNRFLKR------DQKTID----------- 311
Query: 292 EPDEDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVV 351
VG+ K+ RH+ +PC K R +
Sbjct: 312 ---------------LVGNDKMKASNSVRHIAIPCN----------KAAMARLIPDIISC 346
Query: 352 FFSTCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKT 411
+ S + F + ++ + S + G + LHG + Q R + F+
Sbjct: 347 YSSGGQTIIFAETKVQVSELSG----------LLDGSR--ALHGEIPQSQREVTLAGFRN 394
Query: 412 ENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKG 461
A L++T+V+ARGLD V+ IIQ + P E Y+HR GRT R G G
Sbjct: 395 GKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTG 444
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 26/222 (11%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTF 121
+L +E P +QAQA+P+I+SGR + A TG+GKT+ ++ P++ +++ ++ DG
Sbjct: 413 KLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPP-VEAGDGPI 471
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWI-VPGYIMGGENRSKEKARLRKGISILIATPGR 180
LV+ PTREL Q+Y + K I VP Y GG +++ + L++G I++ TPGR
Sbjct: 472 GLVMAPTRELVQQIYSDIRKFSKALGIICVPVY--GGSGVAQQISELKRGTEIVVCTPGR 529
Query: 181 LLDHLKKTSSFVYTNLR---WIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAV 237
++D L TSS TNLR +++ DEADR+ ++GF I I+ +N
Sbjct: 530 MIDIL-CTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV-------------QNIR 575
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSI 279
P RQ +L SAT +V LA+ L PV I + +S+
Sbjct: 576 P-----DRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV 612
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 405 SFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESL 464
S FK++ LL++T V+ARGLD ++ ++ +D P +YVHRVGRT R G KG ++
Sbjct: 656 SISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAV 715
Query: 465 LFLQPIERDYLQDLEKHGVSLTEYPL 490
F+ + Y DL K + L+E P+
Sbjct: 716 TFISEDDAKYAPDLVK-ALELSEQPV 740
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 182/412 (44%), Gaps = 92/412 (22%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ VQ + IP + G + A +G GKT ++ + ++ ++ AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------AL 118
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVP----GYIMGGENRSKEKARLRKGIS-ILIATP 178
VL TREL Q+ V RF +P GG N K L+ I++ TP
Sbjct: 119 VLCHTRELAYQICNEFV----RFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 179 GRLLDHLKKTSSFVYTNLRWIIFDEADRILE-LGFGKDIEEILDLLGSTRTGCDDQENAV 237
GR+L L + N+R I DE D++LE L +D++EI +
Sbjct: 175 GRVL-ALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM--------------- 218
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDS 297
+ +Q ++ SATL++++ + K +++P+ I +DD++
Sbjct: 219 ---TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA------------------- 256
Query: 298 EEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCD 357
K+ G L+Q ++K L E E ++K+ D
Sbjct: 257 ------KLTLHG-------LVQHYIK----------------LSEMEKNRKLNDLL---D 284
Query: 358 AVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKI--LHLHGNMEQENRRTSFQAFKTENSA 415
A+DF+ ++ S ++ ++ + C + +H M QE R T +++FK +
Sbjct: 285 ALDFNQVVIFVKSVSRAAEL----NKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKR 340
Query: 416 LLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
+L++TD+ RG+D +V +I YD P A Y+HRVGR R G KG ++ F+
Sbjct: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 182/412 (44%), Gaps = 92/412 (22%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ VQ + IP + G + A +G GKT ++ + ++ ++ AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------AL 118
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVP----GYIMGGENRSKEKARLRKGIS-ILIATP 178
VL TREL Q+ V RF +P GG N K L+ I++ TP
Sbjct: 119 VLCHTRELAYQICNEFV----RFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 179 GRLLDHLKKTSSFVYTNLRWIIFDEADRILE-LGFGKDIEEILDLLGSTRTGCDDQENAV 237
GR+L L + N+R I DE D++LE L +D++EI +
Sbjct: 175 GRVL-ALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM--------------- 218
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDS 297
+ +Q ++ SATL++++ + K +++P+ I +DD++
Sbjct: 219 ---TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA------------------- 256
Query: 298 EEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCD 357
K+ G L+Q ++K L E E ++K+ D
Sbjct: 257 ------KLTLHG-------LVQHYIK----------------LSEMEKNRKLNDLL---D 284
Query: 358 AVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKI--LHLHGNMEQENRRTSFQAFKTENSA 415
A+DF+ ++ S ++ ++ + C + +H M QE R T +++FK +
Sbjct: 285 ALDFNQVVIFVKSVSRAAEL----NKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKR 340
Query: 416 LLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
+L++TD+ RG+D +V +I YD P A Y+HRVGR R G KG ++ F+
Sbjct: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/429 (24%), Positives = 191/429 (44%), Gaps = 84/429 (19%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q + I G + A +GTGKT + + ++ L + Q AL
Sbjct: 60 GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQ------AL 113
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ E +++ L + + +GG + +++ L+ G+ +++ TPGR+ D
Sbjct: 114 VLAPTRELAQQI-EKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFD 172
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
L++ S ++ + DEAD +L GF I +I LL S
Sbjct: 173 LLRR-QSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPS------------------ 213
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPV--MIGLDDKSIEPISTTASLDHAEPDEDSEEKY 301
+ Q + SAT+ + + + + PV ++ D+ ++E I + D EE
Sbjct: 214 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK------QFYVNVDKEE-- 265
Query: 302 SGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDF 361
K+ T+ D L+E + V+F +T VD+
Sbjct: 266 -WKLETLCD-----------------------------LYETLAITQSVIFVNTRRKVDW 295
Query: 362 HYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTD 421
++S + + HG+M+Q R + F++ +S +L++TD
Sbjct: 296 LTDKMRSRDHT-----------------VSATHGDMDQNTRDIIMREFRSGSSRVLITTD 338
Query: 422 VSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK- 480
+ ARG+D +V +I +D P + Y+HR+GR+ R G KG ++ F+ + + D+++
Sbjct: 339 LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRF 398
Query: 481 HGVSLTEYP 489
+ V + E P
Sbjct: 399 YNVVVEELP 407
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 127/461 (27%), Positives = 197/461 (42%), Gaps = 119/461 (25%)
Query: 83 RHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFALVLVPTRELCLQVYEILVKL 142
R VN+ TG+GKT++Y PI+ L S R R ALV++PTR+L LQV ++
Sbjct: 73 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLR-----ALVVLPTRDLALQVKDV---- 123
Query: 143 LHRFHWIVP------GYIMGGENRSKEKARLRK---------------------GISILI 175
F I P G +G + + E ++L K + IL+
Sbjct: 124 ---FDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILV 180
Query: 176 ATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
ATPGRL+DH+ T F +LR+++ DE DR+L + + +L L T+T D
Sbjct: 181 ATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQL---TQTSDDSLFP 237
Query: 236 A----VPGA----SKTQRQN---------------LLLSATLNEKVNHLAKISLENPVMI 272
+ VP A +RQ+ ++LSATL + + L ++ L +P+ +
Sbjct: 238 SFTPFVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFM 297
Query: 273 GLDDKSIEPISTTASLDHAEPDEDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRL-P 331
TT Y++P +L +++ C + + P
Sbjct: 298 -----------TTGG---------------------SRYRLPEKL--ECLRLICETGMKP 323
Query: 332 VLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKIL 391
V L L +E E K ++F S+ V+ L K F P+I K
Sbjct: 324 VYLVALLKSWEGE---KCIIFTSS---VETTRRLCKLLNFFGDPKI-----------KAK 366
Query: 392 HLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRV 451
G + Q R +AF+ + +L+++D RG+D V +I YD P A ++HR
Sbjct: 367 EYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRA 426
Query: 452 GRTARLGEKGESLLFLQPIE-RDYLQDLEKHGV-SLTEYPL 490
GRTAR G+ G L E R + + LEK G S YP+
Sbjct: 427 GRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPI 467
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 180/419 (42%), Gaps = 85/419 (20%)
Query: 63 LGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFA 122
LGF+ PT +Q QAIP++LSGR A TG+GKT A++ P++ L+ +DG A
Sbjct: 159 LGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKR-----PSTDGIRA 213
Query: 123 LVLVPTRELCLQVYEILVKLLH--RFHW-IVPGYIMGGENRSKEKARLRKGISILIATPG 179
++L P REL Q KL+ FH ++ ++ + SK +LI+TP
Sbjct: 214 VILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSK------LWCDVLISTPM 267
Query: 180 RLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPG 239
RL + K + + +++ DE+D++ E K I+ ++ C + P
Sbjct: 268 RLKRAI-KAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVV-------KACSN-----PS 314
Query: 240 ASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEE 299
++ L SATL + V LA+ + + V + + K+ + L A +E
Sbjct: 315 IIRS-----LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEE---- 365
Query: 300 KYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAV 359
GK L L+ F + V++F + +
Sbjct: 366 ---GK-----------------------------LLALRQSFAESLNPPVLIFVQSKERA 393
Query: 360 DFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLS 419
Y LK I G +H ++ R + F+ +L++
Sbjct: 394 KELYDELKC------ENIRAG-----------VIHSDLPPGERENAVDQFRAGEKWVLIA 436
Query: 420 TDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDL 478
TDV ARG+DF + C+I YD P A+ Y+HR+GR+ R G GE++ F + +L+++
Sbjct: 437 TDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNI 495
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 179/406 (44%), Gaps = 83/406 (20%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q + I G + A +GTGKT + + ++ L + Q AL
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ------AL 111
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ +++ + L + + +GG + +++ L+ G+ +++ TPGR+ D
Sbjct: 112 VLAPTRELAQQIEKVM-RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
LK+ S N++ + DEAD +L GF I +I LL
Sbjct: 171 MLKR-QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL------------------PP 211
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPV--MIGLDDKSIEPISTTASLDHAEPDEDSEEKY 301
+ Q + SAT+ + + + + PV ++ D+ ++E I + EK
Sbjct: 212 KIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYV---------NVEKE 262
Query: 302 SGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDF 361
K+ T+ D L+E + V+F +T VD+
Sbjct: 263 EWKLETLCD-----------------------------LYETLAITQSVIFVNTRRKVDW 293
Query: 362 HYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTD 421
++S + + HG+M+Q R + F++ +S +L++TD
Sbjct: 294 LTDKMRSRDHT-----------------VSATHGDMDQNTRDIIMREFRSGSSRVLITTD 336
Query: 422 VSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
+ ARG+D +V +I +D P + Y+HR+GR+ R G KG ++ F+
Sbjct: 337 LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/427 (23%), Positives = 182/427 (42%), Gaps = 80/427 (18%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
G++ P+ +Q +A+ IL GR + A +GTGKT + + ++Q L
Sbjct: 41 GYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ------VL 94
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL P+REL Q E ++ + I +GG++ ++ +L +G+ + TPGR+ D
Sbjct: 95 VLSPSRELASQT-EKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYD 153
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKT 243
+K+ S ++ ++ DE+D +L G I ++ L C
Sbjct: 154 MIKR-GSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVC------------- 199
Query: 244 QRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSG 303
L+SATL +++ + + + +PV I +PDE + E
Sbjct: 200 -----LISATLPQEILEMTEKFMTDPVRI-----------------LVKPDELTLE---- 233
Query: 304 KIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHY 363
+ Y V V + C L+ R + ++F +T VD+
Sbjct: 234 ---GIKQYYVDVDKEEWKFDTLC------------DLYGRLTINQAIIFCNTRQKVDWLT 278
Query: 364 SLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVS 423
++S F + +HG+ Q+ R F++ S +L+++DV
Sbjct: 279 EKMRSSNFI-----------------VSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVW 321
Query: 424 ARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKH-G 482
ARG+D V +I YD P Y+HR+GR R G +G ++ F++ + L+D+E+H G
Sbjct: 322 ARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYG 381
Query: 483 VSLTEYP 489
+ E P
Sbjct: 382 TKIREMP 388
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 189/416 (45%), Gaps = 73/416 (17%)
Query: 65 FEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYD--NRIQRSDGT-F 121
F+ P +QA A ++ G+ ++ +G+GKT+AYL P+I L+ + + S G
Sbjct: 394 FDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPR 453
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
+VLVPT EL QV + + GG + + L +G+ +LIATPGR
Sbjct: 454 VIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRF 513
Query: 182 LDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEE--ILDLLGSTRTGCDDQENAVPG 239
+L +NLR I DE D IL FG D E + +L+ S
Sbjct: 514 T-YLMNEGILGLSNLRCAILDEVD-IL---FGDDEFEAALQNLINS-------------- 554
Query: 240 ASKTQRQNLLLSATLN-EKVNHLAKISLENPVMIGLDDKSIEPISTTAS--LDHAEPDED 296
S Q L ++ATL E N L ++ + V++G + +S L D++
Sbjct: 555 -SPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMG---PRVHRVSNALEEFLVDCSGDDN 610
Query: 297 SEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTC 356
+E K P Q ++ LL I+ E P K ++F C
Sbjct: 611 AE-------------KTPETAFQ--------NKKTALLQIM----EENPVSKTIIF---C 642
Query: 357 DAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKT----E 412
+ ++ + FK +++ ++Q+ +L H + QE+R T+ Q F + E
Sbjct: 643 NKIETCRKVENIFK-----RVDRKERQLH----VLPFHAALSQESRLTNMQEFTSSQPEE 693
Query: 413 NSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGE-KGESLLFL 467
NS L+ TD ++RG+DF V ++ +D P + +EYV RVGRTAR KG++ +F+
Sbjct: 694 NSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFV 749
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 183/413 (44%), Gaps = 53/413 (12%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ VQ + IP + G + A +G GKT ++ + ++ ++ AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------AL 118
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVP----GYIMGGENRSKEKARLRKGIS-ILIATP 178
VL TREL Q+ V RF +P GG N K L+ I++ TP
Sbjct: 119 VLCHTRELAYQICNEFV----RFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 179 GRLLDHLKKTSSFVYTNLRWIIFDEADRILE-LGFGKDIEEILDLLGSTRTGCDDQENAV 237
GR+L L + N+R I DE D++LE L +D++EI +
Sbjct: 175 GRVL-ALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM--------------- 218
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDS 297
+ +Q ++ SATL++++ + K +++ + L S+ +
Sbjct: 219 ---TPHDKQVMMFSATLSKEIRPVCKKFMQDGLRT-LSGDSVALWWVGFGSGYCVFPRFH 274
Query: 298 EEKYSGKIPTVGDYKVPVQL-IQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTC 356
+ +P+ D P+++ + K+ L +++H + +K
Sbjct: 275 RARMGLNVPSNID---PMEIYVDDEAKL-------TLHGLVQHYIKLSEMEKNRKLNDLL 324
Query: 357 DAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKI--LHLHGNMEQENRRTSFQAFKTENS 414
DA+DF+ ++ S ++ ++ + C + +H M QE R T +++FK +
Sbjct: 325 DALDFNQVVIFVKSVSRAAEL----NKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHK 380
Query: 415 ALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
+L++TD+ RG+D +V +I YD P A Y+HRVGR R G KG ++ F+
Sbjct: 381 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 433
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 170/391 (43%), Gaps = 92/391 (23%)
Query: 85 ALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFALVLVPTRELCLQVYEILVKLLH 144
+ A +G GKT ++ + ++ ++ ALVL TREL Q+ V
Sbjct: 3 VICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------ALVLCHTRELAYQICNEFV---- 52
Query: 145 RFHWIVP----GYIMGGENRSKEKARLRKGI-SILIATPGRLLDHLKKTSSFVYTNLRWI 199
RF +P GG N K L+ I++ TPGR+L L + N+R
Sbjct: 53 RFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVL-ALAREKDLSLKNVRHF 111
Query: 200 IFDEADRILE-LGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQRQNLLLSATLNEKV 258
I DE D++LE L +D++EI + + +Q ++ SATL++++
Sbjct: 112 ILDECDKMLESLDMRRDVQEIFKM------------------TPHDKQVMMFSATLSKEI 153
Query: 259 NHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGKIPTVGDYKVPVQLI 318
+ K +++P+ I +DD++ K+ G L+
Sbjct: 154 RPVCKKFMQDPMEIYVDDEA-------------------------KLTLHG-------LV 181
Query: 319 QRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLKSFKFSSYPQIE 378
Q ++K L E E ++K+ DA+DF+ ++ S ++
Sbjct: 182 QHYIK----------------LSEMEKNRKLNDLL---DALDFNQVVIFVKSVSRAAEL- 221
Query: 379 EGDKQMFLGCKI--LHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCII 436
++ + C + +H M QE R T +++FK + +L++TD+ RG+D +V +I
Sbjct: 222 ---NKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVI 278
Query: 437 QYDCPGEATEYVHRVGRTARLGEKGESLLFL 467
YD P A Y+HRVGR R G KG ++ F+
Sbjct: 279 NYDMPDSADTYLHRVGRAGRFGTKGLAITFV 309
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 31/216 (14%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSY--DNRIQRSDGTF 121
G++ PT +Q QAIP L+G+ L +A TG+GKT ++L PII +Y ++ +
Sbjct: 129 GYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPL 188
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
A+VL PTRELC+QV E K+L + ++GG+ S + R+++G+ ++I TPGR+
Sbjct: 189 AMVLAPTRELCVQV-EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRV 247
Query: 182 LDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGAS 241
+D L K + N+ + DE D +L+ GF + +I L
Sbjct: 248 VDLLSK-HTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL------------------ 288
Query: 242 KTQRQNLLLSATLNEKV----NHLAK----ISLENP 269
+Q Q LL SAT++ +V LAK +S+ NP
Sbjct: 289 -SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNP 323
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 387 GCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATE 446
G K L +HG + RR +F +L+ST V RG+D VR +I +D P E
Sbjct: 382 GVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKE 441
Query: 447 YVHRVGRTARLGEKGESLLFLQPIERDYLQDL 478
Y+H +GR +R+GEKG +++F+ +R+ DL
Sbjct: 442 YIHVIGRASRMGEKGTAIVFVNEDDRNLFPDL 473
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 31/216 (14%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSY--DNRIQRSDGTF 121
G++ PT +Q QAIP L+G+ L +A TG+GKT ++L PII +Y ++ +
Sbjct: 129 GYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPL 188
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
A+VL PTRELC+QV E K+L + ++GG+ S + R+++G+ ++I TPGR+
Sbjct: 189 AMVLAPTRELCVQV-EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRV 247
Query: 182 LDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGAS 241
+D L K + N+ + DE D +L+ GF + +I L
Sbjct: 248 VDLLSK-HTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL------------------ 288
Query: 242 KTQRQNLLLSATLNEKV----NHLAK----ISLENP 269
+Q Q LL SAT++ +V LAK +S+ NP
Sbjct: 289 -SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNP 323
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 387 GCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATE 446
G K L +HG + RR +F +L+ST V RG+D VR +I +D P E
Sbjct: 382 GVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKE 441
Query: 447 YVHRVGRTARLGEKGESLLFLQPIERDYLQDL 478
Y+H +GR +R+GEKG +++F+ +R+ DL
Sbjct: 442 YIHVIGRASRMGEKGTAIVFVNEDDRNLFPDL 473
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 176/407 (43%), Gaps = 75/407 (18%)
Query: 61 DRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT 120
+ +GF PT +Q +A+P + +GR +++A TG+GKT+ YL I + + +Q
Sbjct: 92 EEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQ----- 146
Query: 121 FALVLVPTRELCLQVYEILVKLLHRFHWIVPG----YIMGGENRSKEKARLR-KGISILI 175
A+++VPTREL +QV ++ L + V G ++ G + K+ L+ + +IL+
Sbjct: 147 -AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILV 205
Query: 176 ATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQEN 235
AT L L+K F ++R ++ DE D + K + + LL S + CD ++
Sbjct: 206 ATVASLCHMLEK-HIFRIDSVRVLVVDEVDFLFY--SSKQVGSVRKLLTSF-SSCDKRQT 261
Query: 236 AVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDE 295
AS Q ++ + I+ T + H
Sbjct: 262 VFASASIPQHKHFV--------------------------HDCIQQKWTKRDVVHVH--- 292
Query: 296 DSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFF-- 353
S +P +P+ L+ R V ++ VLL++L E + + ++F
Sbjct: 293 -----VSAIMP------MPLCLLHRFVMCEKTNKHQVLLALL----ESDAPESAIIFVGE 337
Query: 354 ----STCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAF 409
S D +LL F +SY +IL L G+M +R S
Sbjct: 338 QSEKSKKAGNDPSTTLLMEFLKTSYKG----------SLEILLLEGDMNFNSRAASLTEI 387
Query: 410 KTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTAR 456
+ LL+STD++ARG+D P+ I +D P T+Y+HR GR R
Sbjct: 388 RQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGR 434
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 120/495 (24%), Positives = 198/495 (40%), Gaps = 116/495 (23%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
G E PTL+Q AIP IL G+ + A TG+GKT+AYL P++ L S D+ ++ A
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGI-SILIATPGRLL 182
+LVP+RELC QVY + L+ + + + + G+ IL++TP +
Sbjct: 125 ILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIP 184
Query: 183 DHLKK---TSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPG 239
+ V +L ++ DEAD +L G+ ++ + ++ R C
Sbjct: 185 KCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSII-PRRCQC--------- 234
Query: 240 ASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEE 299
LL+SAT + V L K+ L NP+++ L + D D EE
Sbjct: 235 --------LLMSATTSSDVEKLKKLILHNPIVLTLTE-----------------DNDKEE 269
Query: 300 KYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAV 359
+ + + C ++ +L + E +K+++F +T D +
Sbjct: 270 AVPSNV--------------QQFWISCSAQDKLLHILALLKLEV-VQKKILIFINTID-M 313
Query: 360 DFHYSL-LKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLL 418
F L L+ F G K L+G + Q +R + F L+
Sbjct: 314 GFRLKLFLEKF-----------------GIKSAILNGELPQNSRLHILEQFNAGLFDYLI 356
Query: 419 STDVS---------ARG------------------LDFPKVRCI--------IQYDCPGE 443
+TD + A+G +F VR I I +D P
Sbjct: 357 ATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQS 416
Query: 444 ATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEKHGVS--------LTEYPLLKVLD 495
T Y+HR+GRT R G S+ + P E + +D++ S +T +PLL
Sbjct: 417 VTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLASDKNKDIDIITPFPLLTENA 476
Query: 496 YFPLHGQSKHLKKSV 510
L +++ + KSV
Sbjct: 477 VESLRYRAEDVAKSV 491
>AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090369-22092885 REVERSE LENGTH=581
Length = 581
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 196/467 (41%), Gaps = 66/467 (14%)
Query: 59 LRDRLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQ--SYDNRI-Q 115
LRD GF+ P+L QA IP ILSG+ +V A TG+GKT YLAPII L + D+ +
Sbjct: 95 LRDS-GFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTN 153
Query: 116 RSDGTF-----ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKG 170
R + F +L+L P LC QV ++ L+ ++ E + +
Sbjct: 154 REERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDG----NPLLRVEAVCGSQGWPDRL 209
Query: 171 ISILIATPGRLLDHLKKTSSFVYTNLR---WIIFDEADRILELGFGKDIEEILDLLGSTR 227
I+++TP LL++++ + LR +++FDEAD +L F I ++++L
Sbjct: 210 PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINML---- 265
Query: 228 TGCDDQENAVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEP------ 281
D+++ S+ + NL ++ V +I LEN D+ SI
Sbjct: 266 -RFDEKQ-----VSRLAKSNLGRPMEIDASV---PQIDLENEDDAEFDEGSISEEEDEEE 316
Query: 282 ----ISTTASLDHAEPDEDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSIL 337
+ A + E + S+ K G Y Q I +P + IL
Sbjct: 317 EEEYLDDIAQMPSVEAEAGSDTK-KGWRRVRKIYTRSKQYIFIAATLPVNGK-KTAGGIL 374
Query: 338 KHLFE------------REPSQKVVVFFSTCDA-VDFHYSLLK---------SFKFSSYP 375
KH+F+ P K T D+ VD +K + F++
Sbjct: 375 KHMFQDAVWVSGNFLHRNSPRLKQKWVEVTVDSQVDALIEAVKNNNNTNTERTMVFANTV 434
Query: 376 QIEEGDKQMFLGCKI--LHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVR 433
+ E + I H N + + R F+ E + + TD +ARG+D P V
Sbjct: 435 EAVEAVADILEKASIQCYRYHKNHKLDERANILADFR-ETGGVFVCTDAAARGVDVPNVS 493
Query: 434 CIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDYLQDLEK 480
+IQ D A +++HR+GRTAR G+ G RD ++ + +
Sbjct: 494 HVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAIRE 540
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 110/437 (25%), Positives = 185/437 (42%), Gaps = 97/437 (22%)
Query: 63 LGFEAPTLVQAQAIPVILSG--RHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGT 120
+ FE P+ +QA ++P+I++ +H + A G+GKT + ++ L D ++
Sbjct: 110 MKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCF---VLGMLSRVDPTLREPQ-- 164
Query: 121 FALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGIS--ILIATP 178
AL + PTREL Q E+L K + +F I + R A +S ++I TP
Sbjct: 165 -ALCICPTRELANQNMEVLQK-MGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 179 GRLLDHLKKTSSFV---YTNLRWIIFDEADRILEL-GFGKDIEEILDLLGSTRTGCDDQE 234
G LKK +F +L+ ++FDEAD +L GF D +I+ +G
Sbjct: 223 GT----LKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNF---- 274
Query: 235 NAVPGASKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPD 294
Q LL SAT NE V ++++P + + + + +LD
Sbjct: 275 -----------QVLLFSATFNETVKDFVARTVKDPNQLFVKREDL-------ALD----- 311
Query: 295 EDSEEKYSGKIPTVGDYKVPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFS 354
+V YKV Q ++V I + E + ++F
Sbjct: 312 ------------SVKQYKVVCPKEQNKIEV-----------IKDQIMELGDIGQTIIFVK 348
Query: 355 T-CDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTEN 413
T A H +L + +G + +HGN+ + +R + FK
Sbjct: 349 TKASAQKVHKALAE------------------MGYDVTSVHGNLTESDRDKIVKEFKECL 390
Query: 414 SALLLSTDVSARGLDFPKVRCIIQYDCPG--EATE-----YVHRVGRTARLGEKGE--SL 464
+ +L++TDV ARG D +V ++ Y+ P E E Y+HRVGR R G KG +L
Sbjct: 391 TQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNL 450
Query: 465 LFLQPIERDYLQDLEKH 481
L +++ ++ +EK+
Sbjct: 451 LLDDGWDKEVMEKIEKY 467
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 33/207 (15%)
Query: 74 QAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNR---IQRSDGTFALVLVPTRE 130
QAIP L+G+ L +A TG+GKT ++L PII +Y + QR + A+VL PTRE
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN-PLAMVLAPTRE 60
Query: 131 LCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKKTSS 190
LC+QV E K+L + ++GG+ S + R+++G+ ++I TPGR++D L K +
Sbjct: 61 LCVQV-EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSK-HT 118
Query: 191 FVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGASKTQRQNLLL 250
N+ + DE D +L+ GF + +I L +Q Q LL
Sbjct: 119 IELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-------------------SQPQVLLF 159
Query: 251 SATLNEKV----NHLAK----ISLENP 269
SAT++ +V LAK +S+ NP
Sbjct: 160 SATISREVEKVGGSLAKEIILVSIGNP 186
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 387 GCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATE 446
G K L +HG + RR +F +L+ST V RG+D VR +I +D P E
Sbjct: 245 GVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKE 304
Query: 447 YVHRVGRTARLGEKGESLLFLQPIERDYLQDL 478
Y+H +GR +R+GEKG +++F+ +R+ DL
Sbjct: 305 YIHVIGRASRMGEKGTAIVFVNEDDRNLFPDL 336
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 26/217 (11%)
Query: 62 RLGFEAPTLVQAQAIPVI-LSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQR---- 116
RL F+ PT +Q V G+ + A TG+GKT+A+ PI+ L ++ +
Sbjct: 207 RLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYAL 266
Query: 117 ---------SDGTF-ALVLVPTRELCLQVYEILVKLLHRFHW-IVPGYIMGGENRSKEKA 165
+DG AL++ PTREL LQV E L +VP I+GG K++
Sbjct: 267 KGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVP--IVGGMFSEKQER 324
Query: 166 RLRKGISILIATPGRLLDHLKKTSSFVYT--NLRWIIFDEADRILELGFGKDIEEILDLL 223
RL++ I++ATPGRL + + + +L + + DEADR++E G ++++ ILDLL
Sbjct: 325 RLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
Query: 224 GST------RTGCDDQENAVPGASKTQRQNLLLSATL 254
T +T + V K +RQ + SAT+
Sbjct: 385 PVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATI 421
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%)
Query: 385 FLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEA 444
LG + L M+Q R S F+ + +L++TD+ ARG+D VR II Y P A
Sbjct: 524 ILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSA 583
Query: 445 TEYVHRVGRTARLGEKGESLLFLQPIE 471
YVHR GRTAR G S+ ++P E
Sbjct: 584 EVYVHRCGRTARAFADGCSIALIEPNE 610
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q + I G + A +GTGKT + + ++ L + Q AL
Sbjct: 53 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ------AL 106
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ +++ + L + + +GG + +++ L+ G+ +++ TPGR+ D
Sbjct: 107 VLAPTRELAQQIEKVM-RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 165
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLL 223
LK+ S N++ + DEAD +L GF I +I LL
Sbjct: 166 MLKR-QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL 204
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 394 HGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGR 453
HG+M+Q R + F++ +S +L++TD+ ARG+D +V +I +D P + Y+HR+GR
Sbjct: 304 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 363
Query: 454 TARLGEKGESLLFLQPIERDYLQDLEK-HGVSLTEYP 489
+ R G KG ++ F+ + L D++K + V + E P
Sbjct: 364 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELP 400
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q + I G + A +GTGKT + + ++ L + Q AL
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ------AL 111
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ +++ + L + + +GG + +++ L+ G+ +++ TPGR+ D
Sbjct: 112 VLAPTRELAQQIEKVM-RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLL 223
LK+ S N++ + DEAD +L GF I +I LL
Sbjct: 171 MLKR-QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL 209
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 394 HGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGR 453
HG+M+Q R + F++ +S +L++TD+ ARG+D +V +I +D P + Y+HR+GR
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 368
Query: 454 TARLGEKGESLLFLQPIERDYLQDLEK-HGVSLTEYP 489
+ R G KG ++ F+ + L D++K + V + E P
Sbjct: 369 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELP 405
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q + I G + A +GTGKT + + ++ L + Q AL
Sbjct: 48 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ------AL 101
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ +++ + L + + +GG + +++ L+ G+ +++ TPGR+ D
Sbjct: 102 VLAPTRELAQQIEKVM-RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 160
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLL 223
LK+ S N++ + DEAD +L GF I +I LL
Sbjct: 161 MLKR-QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL 199
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 394 HGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGR 453
HG+M+Q R + F++ +S +L++TD+ ARG+D +V +I +D P + Y+HR+GR
Sbjct: 299 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 358
Query: 454 TARLGEKGESLLFLQPIERDYLQDLEK-HGVSLTEYP 489
+ R G KG ++ F+ + L D++K + V + E P
Sbjct: 359 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELP 395
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q + I G + A +GTGKT + + ++ L + Q AL
Sbjct: 53 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQ------AL 106
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ +++ + L + + +GG + +++ L+ G+ +++ TPGR+ D
Sbjct: 107 VLAPTRELAQQIEKVM-RALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 165
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLL 223
L++ S ++ + DEAD +L GF I +I LL
Sbjct: 166 MLRR-QSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLL 204
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 394 HGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGR 453
HG+M+Q R + F++ +S +L++TD+ ARG+D +V +I +D P + Y+HR+GR
Sbjct: 304 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 363
Query: 454 TARLGEKGESLLFLQPIERDYLQDLEK-HGVSLTEYP 489
+ R G KG ++ F+ ++ L D++K + V + E P
Sbjct: 364 SGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELP 400
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ +Q + I G + A +GTGKT + + ++ L + Q AL
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQ------AL 111
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLD 183
VL PTREL Q+ E +++ L + + +GG + +++ L+ G+ +++ TPGR+ D
Sbjct: 112 VLAPTRELAQQI-EKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 184 HLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLL 223
L++ S ++ + DEAD +L GF I +I LL
Sbjct: 171 MLRR-QSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLL 209
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 394 HGNMEQENRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGR 453
HG+M+Q R + F++ +S +L++TD+ ARG+D +V +I +D P + Y+HR+GR
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 368
Query: 454 TARLGEKGESLLFLQPIERDYLQDLEK-HGVSLTEYP 489
+ R G KG ++ F+ ++ L D++K + V + E P
Sbjct: 369 SGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELP 405
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 357 DAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKI--LHLHGNMEQENRRTSFQAFKTENS 414
DA+DF+ ++ S ++ ++ + C + +H M QE R T +++FK +
Sbjct: 343 DALDFNQVVIFVKSVSRAAEL----NKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHK 398
Query: 415 ALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIERDY 474
+L++TD+ RG+D +V +I YD P A Y+HRVGR R G KG ++ F+
Sbjct: 399 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSE 458
Query: 475 L--QDLEKHGVSLTEYP 489
+ Q E+ V + E P
Sbjct: 459 VLNQVQERFEVDIKELP 475
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 35/206 (16%)
Query: 64 GFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFAL 123
GFE P+ VQ + IP + G + A +G GKT ++ + ++ ++ AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS------AL 118
Query: 124 VLVPTRELCLQVYEILVKLLHRFHWIVP----GYIMGGENRSKEKARLRKGI-SILIATP 178
VL TREL Q+ V RF +P GG N K L+ I++ TP
Sbjct: 119 VLCHTRELAYQICNEFV----RFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 179 GRLLDHLKKTSSFVYTNLRWIIFDEADRILE-LGFGKDIEEILDLLGSTRTGCDDQENAV 237
GR+L L + N+R I DE D++LE L +D++EI +
Sbjct: 175 GRVL-ALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM--------------- 218
Query: 238 PGASKTQRQNLLLSATLNEKVNHLAK 263
+ +Q ++ SATL++++ + K
Sbjct: 219 ---TPHDKQVMMFSATLSKEIRPVCK 241
>AT5G08110.1 | Symbols: | nucleic acid binding;ATP-dependent
helicases;ATP binding;helicases;ATP-dependent helicases
| chr5:2594854-2600114 REVERSE LENGTH=1141
Length = 1141
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 62 RLGFEAPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTF 121
R+G QA+AI L+G++ V T +GK++ Y P+ L N +
Sbjct: 388 RIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVFEELCKDTN-------SC 440
Query: 122 ALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRL 181
AL L PT+ L L L+ F + + G+ K++ RLR +LI P L
Sbjct: 441 ALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSNARLLITNPDML 500
Query: 182 ----LDHLKKTSSFVYTNLRWIIFDEA 204
L K+ S + +NLR+I+ DEA
Sbjct: 501 HISILRRHKEQFSRILSNLRYIVIDEA 527
>AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6462100-6463687
FORWARD LENGTH=315
Length = 315
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 20/150 (13%)
Query: 313 VPVQLIQRHVKVPCGSRLPVLLSILKHLFEREPSQKVVVFF------STCDAVDFHYSLL 366
+P+ L+ R V ++ VLL++L E + + ++F S D +LL
Sbjct: 142 MPLCLLHRFVMCEKTNKHQVLLALL----ESDAPESAIIFVGEQSEKSKKAGNDPSTTLL 197
Query: 367 KSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQENRRTSFQAFKTENSALLLSTDVSARG 426
F +SY +IL L G+M +R S + LL+STD++ARG
Sbjct: 198 MEFLKTSYKG----------SLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARG 247
Query: 427 LDFPKVRCIIQYDCPGEATEYVHRVGRTAR 456
+D P+ I +D P T+Y+HR GR R
Sbjct: 248 IDLPETTHIFNFDLPQTVTDYLHRAGRAGR 277