Miyakogusa Predicted Gene

Lj6g3v1161820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1161820.1 Non Chatacterized Hit- tr|C5Y1H4|C5Y1H4_SORBI
Putative uncharacterized protein Sb04g032730
OS=Sorghu,40.35,0.000000000006,DOG1,DOG1 domain; seg,NULL,CUFF.59157.1
         (286 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22600.1 | Symbols:  | unknown protein; Has 26 Blast hits to ...   171   7e-43
AT3G14880.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    50   2e-06
AT3G14880.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    50   2e-06

>AT4G22600.1 | Symbols:  | unknown protein; Has 26 Blast hits to 26
           proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:11900211-11901032 REVERSE LENGTH=273
          Length = 273

 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 160/289 (55%), Gaps = 40/289 (13%)

Query: 4   AVFSRQKQSQSQGFKEYYSEWFTALKNNLLPLLRRSISGDSPTILST-HVEMLHQHFQSY 62
           + FSR+K S+   F ++Y +W   L  N LPLLR+S+S  +   + + +V+++ +H   Y
Sbjct: 4   SFFSRKKPSRR--FNDFYEDWSKTLTENCLPLLRQSLSSAASASVLSSNVDLVLRHLVLY 61

Query: 63  YHALDAAITSDPTQLLSQP-WRHPLEIPLLWLGDLHPSIFTNLARSFLXXXXXXXXXXXX 121
           Y  LD A   +    L  P WR+ LE P L+LGD+HP + TNL RSF+            
Sbjct: 62  YETLDLAADHNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDRE--------- 112

Query: 122 XXXXXXXXXXXXXXNHSLADQIDRVXXXXXXLNLHRPWQVALAWRNPPESLLLRMDEIEC 181
                         N    D+ +          +++P ++ +AW++P + L+ R+D+IEC
Sbjct: 113 --------------NQDSDDEDEETSLDL----VNQPLKMTMAWKDPSDELVKRIDQIEC 154

Query: 182 GLRVIVPTLSDRLARAEAGFVHRVVGDW---FQCRESK------GAAKVAVGEDVRAHMD 232
            +R++VP L DR+ + +  FV RV   W   +Q  + K        A  +V E  +  M+
Sbjct: 155 TMRLMVPGLMDRMRKTQRSFVARVSESWVSSYQVGKKKKLTATVATASTSVDEAAKIEME 214

Query: 233 EVVSVFLCANRVRRSVLVDIISAATVYQAALFLEGLAQFLIGFKDHDLL 281
           E+VS+F+ ANR+R+SV++DI+ A + +QAALFLEGL QFL GFKD  LL
Sbjct: 215 ELVSIFVDANRLRKSVIMDIVGATSEHQAALFLEGLCQFLAGFKDQILL 263


>AT3G14880.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: response to karrikin; BEST Arabidopsis
           thaliana protein match is: transcription factor-related
           (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr3:5006565-5007689 FORWARD LENGTH=237
          Length = 237

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 16  GFKEYYSEWFTALKNNLLPLL------RRSISGDSPTILSTHVEMLHQHFQSYYHALDAA 69
            FK++   W   L+N+L  L       R S +GD    L   V+ + +HF+ Y+ A  AA
Sbjct: 9   SFKKFQQSWIEQLRNHLNHLRSAQNHHRNSATGDEER-LREAVDRVMEHFREYHRAKWAA 67

Query: 70  ITSDPTQLLSQPWRHPLEIPLLWLGDLHPSIFTNL 104
              D  ++++ PW   LE  L W+G   P+   +L
Sbjct: 68  TDKDVIEVMASPWASALERSLQWVGGWRPTTLFHL 102


>AT3G14880.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: transcription factor-related (TAIR:AT4G18650.1); Has
           560 Blast hits to 560 proteins in 40 species: Archae -
           0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 558;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:5006565-5007689 FORWARD LENGTH=244
          Length = 244

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 16  GFKEYYSEWFTALKNNLLPLL------RRSISGDSPTILSTHVEMLHQHFQSYYHALDAA 69
            FK++   W   L+N+L  L       R S +GD    L   V+ + +HF+ Y+ A  AA
Sbjct: 9   SFKKFQQSWIEQLRNHLNHLRSAQNHHRNSATGDEER-LREAVDRVMEHFREYHRAKWAA 67

Query: 70  ITSDPTQLLSQPWRHPLEIPLLWLGDLHPSIFTNL 104
              D  ++++ PW   LE  L W+G   P+   +L
Sbjct: 68  TDKDVIEVMASPWASALERSLQWVGGWRPTTLFHL 102