Miyakogusa Predicted Gene

Lj6g3v1126390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1126390.1 NODE_37882_length_1192_cov_179.825500.path2.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06483.1 | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kina...   461   e-130

>AT3G06483.1 | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kinase
           | chr3:1990727-1992581 REVERSE LENGTH=366
          Length = 366

 Score =  461 bits (1186), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/265 (84%), Positives = 242/265 (91%), Gaps = 5/265 (1%)

Query: 3   DEKDFTEMIKAIKVRHNNVVPTMALGVQQLKKGMDPKIVYEDLIEIHQFLDRFYMSRIGI 62
           DEKDFT+MIKA+KVRHNNVVP MALGV QLKKGM+      +L EIHQFLDRFY+SRIGI
Sbjct: 106 DEKDFTQMIKAVKVRHNNVVPMMALGVNQLKKGMNSG----NLDEIHQFLDRFYLSRIGI 161

Query: 63  RMLIGQHVELHNPNPAPHCIGYIHTKMSPVEVARNASEDARSICCREYGSAPDVQIYGDP 122
           RMLIGQHVELHNPNP  H +GYIHTKMSP+EVARNASEDARSIC REYGSAP++ IYGDP
Sbjct: 162 RMLIGQHVELHNPNPPLHTVGYIHTKMSPMEVARNASEDARSICFREYGSAPEINIYGDP 221

Query: 123 DFTFPYVPAHLHLMVFELVKNSLRAVQERFIDSDNVAPPVRIIVADGLEDVTIKVSDEGG 182
            FTFPYVP HLHLM++ELVKNSLRAVQERF+DSD VAPP+RIIVADG+EDVTIKVSDEGG
Sbjct: 222 SFTFPYVPTHLHLMMYELVKNSLRAVQERFVDSDRVAPPIRIIVADGIEDVTIKVSDEGG 281

Query: 183 GIPRSGLPKIFTYLYSTARNPLDEHEDLGLGD-NVTMAGYGYGIPISRLYARYFGGDLQI 241
           GI RSGLP+IFTYLYSTARNPL+E  DLG+ D  VTMAGYGYG+PISRLYARYFGGDLQI
Sbjct: 282 GIARSGLPRIFTYLYSTARNPLEEDVDLGIADVPVTMAGYGYGLPISRLYARYFGGDLQI 341

Query: 242 ISMEGYGTDAYLHLSRLGDSQEPLP 266
           ISMEGYGTDAYLHLSRLGDSQEPLP
Sbjct: 342 ISMEGYGTDAYLHLSRLGDSQEPLP 366