Miyakogusa Predicted Gene

Lj6g3v1126350.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1126350.2 Non Chatacterized Hit- tr|B4FEF9|B4FEF9_MAIZE
Uncharacterized protein OS=Zea mays PE=4 SV=1,76.92,9e-19,Helical
region found in SNAREs,Target SNARE coiled-coil domain; NOVEL PLANT
SNARE,NULL; VESICLE TRAN,CUFF.59126.2
         (270 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |...   423   e-119
AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |...   418   e-117
AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |...   348   3e-96
AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant sn...   293   7e-80

>AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
           chr3:5969909-5972290 REVERSE LENGTH=269
          Length = 269

 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/263 (79%), Positives = 237/263 (90%), Gaps = 1/263 (0%)

Query: 3   TANLQMSPQVEQIHGEIRDHFRALANGFPRLDKIKDSNRQSKQLEELAEKMRECQRLIKD 62
            +NL MSPQ+EQIHGEIRDHFRALANGF RLDKIKDS RQSKQLEEL +KMREC+RL+K+
Sbjct: 2   ASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKE 61

Query: 63  FDREIKDEEGRNPPEVSKQLNDEKQSMIREHNSYVALRKTYMNNLGNKKLELFDMGAGAS 122
           FDRE+KDEE RN PEV+KQLNDEKQSMI+E NSYVALRKTYM+ LGNKK+ELFDMGAG S
Sbjct: 62  FDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVS 121

Query: 123 -EPIAEDNVQLASELSNQELINAGMKTMDETDQAIERSNQVVHQTIEMGTQTATTLNGQT 181
            EP AE+NVQ+AS +SNQEL++AGMK MDETDQAIERS QVV QT+E+GTQTA  L GQT
Sbjct: 122 GEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQT 181

Query: 182 EQMGRIINELDSLQFSIKKASQLVKEIGRKVATDTCIMLFLFLIVCGVAAIIVVKFVNPN 241
           +QMGR++N LD++QFSIKKASQLVKEIGR+VATD CIM FLFLIVCGV AII+VK VNPN
Sbjct: 182 DQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPN 241

Query: 242 NKDINDIPGLAPPAPTRRLLYVR 264
           NKDI DIPGLAPPA +R+LLY+R
Sbjct: 242 NKDIRDIPGLAPPAQSRKLLYLR 264


>AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |
           chr1:17809223-17811656 REVERSE LENGTH=265
          Length = 265

 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/263 (77%), Positives = 237/263 (90%), Gaps = 1/263 (0%)

Query: 3   TANLQMSPQVEQIHGEIRDHFRALANGFPRLDKIKDSNRQSKQLEELAEKMRECQRLIKD 62
            + L MSP +EQIHGEIRDHFRALANGF RLDKIKDS+RQSKQLEELAEKMR+C+RL+K+
Sbjct: 2   ASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKE 61

Query: 63  FDREIKDEEGRNPPEVSKQLNDEKQSMIREHNSYVALRKTYMNNLGNKKLELFDMGAGAS 122
           FDRE+KD E RN P+V+KQLNDEKQSMI+E NSYVALRKTY+N LGNKK+ELFD GAG S
Sbjct: 62  FDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGVS 121

Query: 123 -EPIAEDNVQLASELSNQELINAGMKTMDETDQAIERSNQVVHQTIEMGTQTATTLNGQT 181
            EP AE+NVQ+AS +SNQEL++AGMK MDETDQAIERS QVVHQT+E+GTQTA+ L GQT
Sbjct: 122 GEPTAEENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQT 181

Query: 182 EQMGRIINELDSLQFSIKKASQLVKEIGRKVATDTCIMLFLFLIVCGVAAIIVVKFVNPN 241
           +QMGR++N+LD++QFS+KKASQLVKEIGR+VATD CIM FLFLIVCGV AII+VK VNPN
Sbjct: 182 DQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPN 241

Query: 242 NKDINDIPGLAPPAPTRRLLYVR 264
           NKDI DIPGLAPPA +R+LLY R
Sbjct: 242 NKDIRDIPGLAPPAQSRKLLYFR 264


>AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
           chr3:5970153-5972290 REVERSE LENGTH=216
          Length = 216

 Score =  348 bits (892), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 167/211 (79%), Positives = 191/211 (90%), Gaps = 1/211 (0%)

Query: 4   ANLQMSPQVEQIHGEIRDHFRALANGFPRLDKIKDSNRQSKQLEELAEKMRECQRLIKDF 63
           +NL MSPQ+EQIHGEIRDHFRALANGF RLDKIKDS RQSKQLEEL +KMREC+RL+K+F
Sbjct: 3   SNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEF 62

Query: 64  DREIKDEEGRNPPEVSKQLNDEKQSMIREHNSYVALRKTYMNNLGNKKLELFDMGAGAS- 122
           DRE+KDEE RN PEV+KQLNDEKQSMI+E NSYVALRKTYM+ LGNKK+ELFDMGAG S 
Sbjct: 63  DRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVSG 122

Query: 123 EPIAEDNVQLASELSNQELINAGMKTMDETDQAIERSNQVVHQTIEMGTQTATTLNGQTE 182
           EP AE+NVQ+AS +SNQEL++AGMK MDETDQAIERS QVV QT+E+GTQTA  L GQT+
Sbjct: 123 EPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTD 182

Query: 183 QMGRIINELDSLQFSIKKASQLVKEIGRKVA 213
           QMGR++N LD++QFSIKKASQLVKEIGR+V 
Sbjct: 183 QMGRVVNHLDTIQFSIKKASQLVKEIGRQVC 213


>AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare
           11 | chr2:14831087-14832979 FORWARD LENGTH=265
          Length = 265

 Score =  293 bits (751), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 159/259 (61%), Positives = 200/259 (77%), Gaps = 7/259 (2%)

Query: 8   MSPQVEQIHGEIRDHFRALANGFPRLDKIKDSNRQSKQLEELAEKMRECQRLIKDFDREI 67
           +S ++ +I G+I D FRAL+NGF +L+KIKD+NRQS+QLEEL +KMR+C+ LIKDFDREI
Sbjct: 7   VSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREI 66

Query: 68  KDEEGRNPPEVSKQLNDEKQSMIREHNSYVALRKTYMNNLG--NKKLELFDMGAGASEPI 125
           K  E  N    ++ LND +QSM++E NSYVAL+K Y +NL   NK+++LFD   G  E  
Sbjct: 67  KSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEH 123

Query: 126 AEDNVQLASELSNQELINAGMKTMDETDQAIERSNQVVHQTIEMGTQTATTLNGQTEQMG 185
            E+NV LAS +SNQEL++ G   MD+TDQAIER  ++V +TI +GT T+  L  QTEQM 
Sbjct: 124 MEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMS 183

Query: 186 RIINELDSLQFSIKKASQLVKEIGRKVATDTCIMLFLFLIVCGVAAIIVVKFVNPNNKDI 245
           R++NELDS+ FS+KKAS+LVKEIGR+VATD CIM FLFLIV GV AII+VK VNPNNKDI
Sbjct: 184 RVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDI 243

Query: 246 NDIP--GLAPPAPTRRLLY 262
            DIP  GLAPPA  RRLL+
Sbjct: 244 RDIPGVGLAPPAMNRRLLW 262