Miyakogusa Predicted Gene

Lj6g3v1126350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1126350.1 tr|D7L787|D7L787_ARALL NPSN13 OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_479220 PE=4 SV=1,72.73,3e-19,
,CUFF.59126.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |...   100   3e-22
AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |...    99   5e-22
AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |...    98   1e-21
AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant sn...    55   8e-09

>AT3G17440.2 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
           chr3:5970153-5972290 REVERSE LENGTH=216
          Length = 216

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)

Query: 6   QWYMNNLGNKKLELFDMGAGAS-EPIAEDNVQLASELSNQELINAGMKTMDETDQAIERS 64
           + YM+ LGNKK+ELFDMGAG S EP AE+NVQ+AS +SNQEL++AGMK MDETDQAIERS
Sbjct: 100 KTYMSTLGNKKVELFDMGAGVSGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERS 159

Query: 65  NQVTLQ 70
            QV  Q
Sbjct: 160 KQVVEQ 165


>AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 |
           chr3:5969909-5972290 REVERSE LENGTH=269
          Length = 269

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 56/66 (84%), Gaps = 1/66 (1%)

Query: 6   QWYMNNLGNKKLELFDMGAGAS-EPIAEDNVQLASELSNQELINAGMKTMDETDQAIERS 64
           + YM+ LGNKK+ELFDMGAG S EP AE+NVQ+AS +SNQEL++AGMK MDETDQAIERS
Sbjct: 100 KTYMSTLGNKKVELFDMGAGVSGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERS 159

Query: 65  NQVTLQ 70
            QV  Q
Sbjct: 160 KQVVEQ 165


>AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 |
           chr1:17809223-17811656 REVERSE LENGTH=265
          Length = 265

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 6   QWYMNNLGNKKLELFDMGAGAS-EPIAEDNVQLASELSNQELINAGMKTMDETDQAIERS 64
           + Y+N LGNKK+ELFD GAG S EP AE+NVQ+AS +SNQEL++AGMK MDETDQAIERS
Sbjct: 100 KTYLNTLGNKKVELFDTGAGVSGEPTAEENVQMASTMSNQELVDAGMKRMDETDQAIERS 159

Query: 65  NQVTLQ 70
            QV  Q
Sbjct: 160 KQVVHQ 165


>AT2G35190.1 | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare
           11 | chr2:14831087-14832979 FORWARD LENGTH=265
          Length = 265

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 5/63 (7%)

Query: 8   YMNNLG--NKKLELFDMGAGASEPIAEDNVQLASELSNQELINAGMKTMDETDQAIERSN 65
           Y +NL   NK+++LFD   G  E   E+NV LAS +SNQEL++ G   MD+TDQAIER  
Sbjct: 102 YSSNLASNNKRVDLFD---GPGEEHMEENVLLASNMSNQELMDKGNSMMDDTDQAIERGK 158

Query: 66  QVT 68
           ++ 
Sbjct: 159 KIV 161