Miyakogusa Predicted Gene

Lj6g3v1126340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1126340.1 Non Chatacterized Hit- tr|F6HE29|F6HE29_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,40.16,1e-16,
,CUFF.59125.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48170.1 | Symbols:  | unknown protein; Has 78 Blast hits to ...   179   4e-46

>AT1G48170.1 | Symbols:  | unknown protein; Has 78 Blast hits to 78
           proteins in 34 species: Archae - 0; Bacteria - 0;
           Metazoa - 30; Fungi - 0; Plants - 48; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:17788810-17789635 FORWARD LENGTH=153
          Length = 153

 Score =  179 bits (455), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 103/124 (83%)

Query: 22  DTSAHSHDQLKITSFSEIVNDVSLHFQIIRFPKQIYVWIGYNSTKLGHMYAAAPTRPNNV 81
           D      + +K++ F+E+ +DV++ FQIIR  KQIYVW+G NS K G +YAAA TRP+N 
Sbjct: 25  DDVERDGNGVKVSCFTEVFDDVTIQFQIIRLAKQIYVWVGCNSAKFGSLYAAASTRPSNT 84

Query: 82  VSVTSLLGGTSDNTGSGIARRLVLKTGLNIVMACSIPKNSPMIEIEAEKILIQKLISLGY 141
           VSVTS+LGGTSDNTGSGIARRLVLKTGLNI++AC+IPKN+P++E +AEK+LI+KLI LGY
Sbjct: 85  VSVTSVLGGTSDNTGSGIARRLVLKTGLNIILACNIPKNNPLLEAKAEKVLIRKLIDLGY 144

Query: 142 TKSR 145
           T S+
Sbjct: 145 TMSK 148