Miyakogusa Predicted Gene

Lj6g3v1105060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1105060.1 Non Chatacterized Hit- tr|D7U731|D7U731_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,59.4,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; MMR_HSR1,GTP
binding domain; no descripti,CUFF.59135.1
         (238 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10650.1 | Symbols:  | P-loop containing nucleoside triphosph...   243   6e-65
AT2G41670.1 | Symbols:  | P-loop containing nucleoside triphosph...   177   5e-45
AT4G02790.1 | Symbols:  | GTP-binding family protein | chr4:1247...    78   4e-15
AT1G52980.1 | Symbols:  | GTP-binding family protein | chr1:1973...    54   1e-07

>AT4G10650.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:6574472-6576231
           REVERSE LENGTH=377
          Length = 377

 Score =  243 bits (621), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 125/233 (53%), Positives = 163/233 (69%), Gaps = 2/233 (0%)

Query: 7   LGRRIGTALKEMIGSKKRAPWHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLL 66
           + R IG A+ +   +  R  W+   MAAA  AI ERIPLVD ++ +RDARIP SSE  LL
Sbjct: 9   IAREIGDAVIKASRNPNRR-WYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELL 67

Query: 67  -KNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENNCISCGVNAHNKESIRKFLTLIQGQ 125
            K  P  SK+II LNK +LA    L+   +YF E N +S  VN+HNK+ +++ L  +Q Q
Sbjct: 68  RKFSPLPSKRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQLLNFLQSQ 127

Query: 126 VRKLGRTDHANYTATVMLIGIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETK 185
           VR+L +  H+ +T T+ML+GIPNVGKSAL N+LH +GRISAAEKGKLKH TVS +PG+TK
Sbjct: 128 VRELHKAGHSGHTTTMMLLGIPNVGKSALSNSLHHIGRISAAEKGKLKHTTVSSQPGDTK 187

Query: 186 DIRSFKIGSHPNIYVLDTPAVLSPEVPDVDVISKLILTGAIGDCFVGIKEIAQ 238
           DI S KIGSHPN+YVLDTP +  P + D ++ +KL LTGAI D  VG  ++A+
Sbjct: 188 DIMSLKIGSHPNVYVLDTPGIFPPNLYDAEICAKLALTGAIPDDIVGELKLAR 240


>AT2G41670.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr2:17374118-17376177
           FORWARD LENGTH=386
          Length = 386

 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 137/214 (64%), Gaps = 7/214 (3%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    MAAA+ AI  R+ L D+++ VRDARIP SS    L++  S+ ++IIALNK DLA 
Sbjct: 28  WFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQMSAKRRIIALNKKDLAN 87

Query: 87  SSGLQAWTEYF--AENNCISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLI 144
            + L  WT +F  ++ +CI+  +NAH++ S+ K L L++    KL        T  VM++
Sbjct: 88  PNVLNKWTRHFESSKQDCIA--INAHSRSSVMKLLDLVE---LKLKEVIAREPTLLVMVV 142

Query: 145 GIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNIYVLDTP 204
           G+PNVGKSAL+N++HQ+       + +LK ATV P PG T+DI  FKI   P+IYVLD+P
Sbjct: 143 GVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGVTQDIAGFKIAHRPSIYVLDSP 202

Query: 205 AVLSPEVPDVDVISKLILTGAIGDCFVGIKEIAQ 238
            VL P +PD++   KL L+G++ D  VG + IAQ
Sbjct: 203 GVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQ 236


>AT4G02790.1 | Symbols:  | GTP-binding family protein |
           chr4:1247416-1249351 FORWARD LENGTH=372
          Length = 372

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 23/218 (10%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W+   +      + E++ L+D+++ VRDARIP S+    +     + K+I+ LN+ D+  
Sbjct: 98  WYPGHIMKTEKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMIS 157

Query: 87  SSGLQAWTEYFAENNCISCGVNAHNKESIRKFLTL-------IQGQVRKLGRTDHANYTA 139
           +     W  YFA+        N        K   L       + G+ R+ G       + 
Sbjct: 158 NDDRNDWARYFAKQGIKVIFTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPR---SV 214

Query: 140 TVMLIGIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNIY 199
              +IG PNVGKS+L+N L            K K    +P PG T++++  K+G   ++ 
Sbjct: 215 RAGIIGYPNVGKSSLINRLL-----------KRKICAAAPRPGVTREMKWVKLGK--DLD 261

Query: 200 VLDTPAVLSPEVPDVDVISKLILTGAIGDCFVGIKEIA 237
           +LD+P +L   + D     KL +   IG+      ++A
Sbjct: 262 LLDSPGMLPMRIDDQAAAIKLAICDDIGEKAYDFTDVA 299


>AT1G52980.1 | Symbols:  | GTP-binding family protein |
           chr1:19737493-19740201 FORWARD LENGTH=576
          Length = 576

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 25/185 (13%)

Query: 47  DIIVHVRDARIPSSSECH----LLKNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENNC 102
           D+IV V DAR P  + CH     LK        I+ LNK DL  +   + W    ++   
Sbjct: 217 DVIVQVIDARDPQGTRCHHLEKTLKEHHKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 276

Query: 103 ISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLIGIPNVGKSALVNALHQVG 162
                 + NK   +  L  +   +R+  R        +V  +G PNVGKS+++N L    
Sbjct: 277 TLAFHASVNKSFGKGSLLSV---LRQFARLKSDKQAISVGFVGYPNVGKSSVINTL---- 329

Query: 163 RISAAEKGKLKHA-TVSPEPGETKDIRSFKIGSHPNIYVLDTPAVLSPEVPDVDVISKLI 221
                   + K+   V+P PGETK  +   +     I+++D P V+       D  + ++
Sbjct: 330 --------RTKNVCKVAPIPGETKVWQYITLTKR--IFLIDCPGVV---YQSRDTETDIV 376

Query: 222 LTGAI 226
           L G +
Sbjct: 377 LKGVV 381