Miyakogusa Predicted Gene

Lj6g3v1105040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1105040.1 Non Chatacterized Hit- tr|I0Z4P9|I0Z4P9_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa
subell,44.96,4e-19,FAMILY NOT NAMED,NULL; LSD1: zinc finger domain,
LSD1 subclass,Zinc finger, LSD1-type; zf-LSD1,Zinc
,NODE_56327_length_431_cov_77.517403.path2.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32540.1 | Symbols: LOL1 | lsd one like 1 | chr1:11768253-117...   148   7e-37
AT1G32540.3 | Symbols: LOL1 | lsd one like 1 | chr1:11768043-117...   146   2e-36
AT1G32540.2 | Symbols: LOL1 | lsd one like 1 | chr1:11768043-117...   146   2e-36
AT4G20380.7 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   3e-32
AT4G20380.2 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   3e-32
AT4G20380.6 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   5e-32
AT4G20380.5 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   5e-32
AT4G20380.4 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   5e-32
AT4G20380.3 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   5e-32
AT4G20380.1 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   132   5e-32
AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein | ...   125   5e-30
AT4G21610.1 | Symbols: LOL2 | lsd one like 2 | chr4:11489069-114...    78   1e-15

>AT1G32540.1 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768253-11769591 FORWARD LENGTH=187
          Length = 187

 Score =  148 bits (374), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 89/110 (80%)

Query: 2   RCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATS 61
           + QLVC+GCRN+L+YP GA +VCCA CN +T VPP G EM+QL CGGC TLLMY  GATS
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 124

Query: 62  VRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
           V+CSCC+T+    E+NQV+H++CGNC   LMY +GA SVKCA+C+++T+V
Sbjct: 125 VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSV 174


>AT1G32540.3 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768043-11769591 FORWARD LENGTH=154
          Length = 154

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 89/110 (80%)

Query: 2   RCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATS 61
           + QLVC+GCRN+L+YP GA +VCCA CN +T VPP G EM+QL CGGC TLLMY  GATS
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91

Query: 62  VRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
           V+CSCC+T+    E+NQV+H++CGNC   LMY +GA SVKCA+C+++T+V
Sbjct: 92  VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSV 141


>AT1G32540.2 | Symbols: LOL1 | lsd one like 1 |
           chr1:11768043-11769591 FORWARD LENGTH=154
          Length = 154

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 89/110 (80%)

Query: 2   RCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATS 61
           + QLVC+GCRN+L+YP GA +VCCA CN +T VPP G EM+QL CGGC TLLMY  GATS
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91

Query: 62  VRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALSVKCAICHYITNV 111
           V+CSCC+T+    E+NQV+H++CGNC   LMY +GA SVKCA+C+++T+V
Sbjct: 92  VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSV 141


>AT4G20380.7 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005012-11006438 FORWARD LENGTH=189
          Length = 189

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 11/123 (8%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGM--EMSQLYCGGCRTLLMYANG 58
           M+ QLVC+GCRN+L+YPRGA NV CA CN I  VPP     +M+ + CGGCRT+LMY  G
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 59  ATSVRCSCCNTITRVP-ESNQVSH--------IHCGNCRTALMYPHGALSVKCAICHYIT 109
           A+SVRCSCC T   VP  SNQV+H        I+CG+CRT LMYP+GA SVKCA+C ++T
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125

Query: 110 NVS 112
           NV+
Sbjct: 126 NVN 128


>AT4G20380.2 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005012-11006438 FORWARD LENGTH=189
          Length = 189

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 11/123 (8%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGM--EMSQLYCGGCRTLLMYANG 58
           M+ QLVC+GCRN+L+YPRGA NV CA CN I  VPP     +M+ + CGGCRT+LMY  G
Sbjct: 6   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

Query: 59  ATSVRCSCCNTITRVP-ESNQVSH--------IHCGNCRTALMYPHGALSVKCAICHYIT 109
           A+SVRCSCC T   VP  SNQV+H        I+CG+CRT LMYP+GA SVKCA+C ++T
Sbjct: 66  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 125

Query: 110 NVS 112
           NV+
Sbjct: 126 NVN 128


>AT4G20380.6 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 11/123 (8%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGM--EMSQLYCGGCRTLLMYANG 58
           M+ QLVC+GCRN+L+YPRGA NV CA CN I  VPP     +M+ + CGGCRT+LMY  G
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59  ATSVRCSCCNTITRVP-ESNQVSH--------IHCGNCRTALMYPHGALSVKCAICHYIT 109
           A+SVRCSCC T   VP  SNQV+H        I+CG+CRT LMYP+GA SVKCA+C ++T
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 110 NVS 112
           NV+
Sbjct: 121 NVN 123


>AT4G20380.5 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 11/123 (8%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGM--EMSQLYCGGCRTLLMYANG 58
           M+ QLVC+GCRN+L+YPRGA NV CA CN I  VPP     +M+ + CGGCRT+LMY  G
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59  ATSVRCSCCNTITRVP-ESNQVSH--------IHCGNCRTALMYPHGALSVKCAICHYIT 109
           A+SVRCSCC T   VP  SNQV+H        I+CG+CRT LMYP+GA SVKCA+C ++T
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 110 NVS 112
           NV+
Sbjct: 121 NVN 123


>AT4G20380.4 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 11/123 (8%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGM--EMSQLYCGGCRTLLMYANG 58
           M+ QLVC+GCRN+L+YPRGA NV CA CN I  VPP     +M+ + CGGCRT+LMY  G
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59  ATSVRCSCCNTITRVP-ESNQVSH--------IHCGNCRTALMYPHGALSVKCAICHYIT 109
           A+SVRCSCC T   VP  SNQV+H        I+CG+CRT LMYP+GA SVKCA+C ++T
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 110 NVS 112
           NV+
Sbjct: 121 NVN 123


>AT4G20380.3 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 11/123 (8%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGM--EMSQLYCGGCRTLLMYANG 58
           M+ QLVC+GCRN+L+YPRGA NV CA CN I  VPP     +M+ + CGGCRT+LMY  G
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59  ATSVRCSCCNTITRVP-ESNQVSH--------IHCGNCRTALMYPHGALSVKCAICHYIT 109
           A+SVRCSCC T   VP  SNQV+H        I+CG+CRT LMYP+GA SVKCA+C ++T
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 110 NVS 112
           NV+
Sbjct: 121 NVN 123


>AT4G20380.1 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=184
          Length = 184

 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 11/123 (8%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGM--EMSQLYCGGCRTLLMYANG 58
           M+ QLVC+GCRN+L+YPRGA NV CA CN I  VPP     +M+ + CGGCRT+LMY  G
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59  ATSVRCSCCNTITRVP-ESNQVSH--------IHCGNCRTALMYPHGALSVKCAICHYIT 109
           A+SVRCSCC T   VP  SNQV+H        I+CG+CRT LMYP+GA SVKCA+C ++T
Sbjct: 61  ASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVT 120

Query: 110 NVS 112
           NV+
Sbjct: 121 NVN 123


>AT4G20380.8 | Symbols: LSD1 | LSD1 zinc finger family protein |
           chr4:11005027-11006438 FORWARD LENGTH=210
          Length = 210

 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 91/149 (61%), Gaps = 37/149 (24%)

Query: 1   MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGM--EMSQLYCGGCRTLLMYANG 58
           M+ QLVC+GCRN+L+YPRGA NV CA CN I  VPP     +M+ + CGGCRT+LMY  G
Sbjct: 1   MQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

Query: 59  ATSVRCSCCNTITRVPE---------------------------SNQVSH--------IH 83
           A+SVRCSCC T   VPE                           SNQV+H        I+
Sbjct: 61  ASSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAHSNQVAHAPSSQVAQIN 120

Query: 84  CGNCRTALMYPHGALSVKCAICHYITNVS 112
           CG+CRT LMYP+GA SVKCA+C ++TNV+
Sbjct: 121 CGHCRTTLMYPYGASSVKCAVCQFVTNVN 149



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 34/108 (31%)

Query: 4   QLVCNGCRNILVYPRGAGNVCCAWCNVITPVP----------------------PAGM-- 39
            ++C GCR +L+Y RGA +V C+ C     VP                      P G+  
Sbjct: 45  HIICGGCRTMLMYTRGASSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLAH 104

Query: 40  ----------EMSQLYCGGCRTLLMYANGATSVRCSCCNTITRVPESN 77
                     +++Q+ CG CRT LMY  GA+SV+C+ C  +T V  SN
Sbjct: 105 SNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSN 152


>AT4G21610.1 | Symbols: LOL2 | lsd one like 2 |
           chr4:11489069-11490300 FORWARD LENGTH=155
          Length = 155

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 51/73 (69%)

Query: 40  EMSQLYCGGCRTLLMYANGATSVRCSCCNTITRVPESNQVSHIHCGNCRTALMYPHGALS 99
           E +Q+ CG CR LL Y  G+  V+CS C T+  V E+NQV  ++C NC+  LMYP+GA +
Sbjct: 57  EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPA 116

Query: 100 VKCAICHYITNVS 112
           V+C+ C+ +T++S
Sbjct: 117 VRCSSCNSVTDIS 129



 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 2   RCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATS 61
           + Q+VC  CR +L Y RG+ +V C+ C  +  V  A  ++ Q+ C  C+ LLMY  GA +
Sbjct: 58  KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEAN-QVGQVNCNNCKLLLMYPYGAPA 116

Query: 62  VRCSCCNTITRVPESNQ 78
           VRCS CN++T + E+N+
Sbjct: 117 VRCSSCNSVTDISENNK 133