Miyakogusa Predicted Gene

Lj6g3v1104890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1104890.1 Non Chatacterized Hit- tr|B3RY12|B3RY12_TRIAD
Putative uncharacterized protein OS=Trichoplax
adhaere,40.21,0.0000000002,RNA-binding domain, RBD,NULL; RRM,RNA
recognition motif domain; SUBFAMILY NOT NAMED,NULL;
TRANSCRIPT,CUFF.59104.1
         (567 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58130.1 | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs) f...   220   3e-57

>AT5G58130.1 | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs)
           family protein | chr5:23521190-23523766 REVERSE
           LENGTH=748
          Length = 748

 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 208/405 (51%), Gaps = 73/405 (18%)

Query: 3   EEEQEQSAVRIFVGGLGEAVTGDDLQRLFASLGTVQSIDTIRTKGRSLAYLDFIPSPTDP 62
           EE+     VR+ VGGLGE+V  DDL ++F+ +GTV +++ +RTKGRS AY+DF PS T+ 
Sbjct: 2   EEKSSGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTN- 60

Query: 63  KSLTKLFSKYNGCAWKGGRLRLEKAKENYLARLKKEWEEEALV--NSIQSPSDDDDVPAQ 120
            SLTKLFS YNGC WKGGRLRLEKAKE+YLARLK+EWE  +    N+I++PSD       
Sbjct: 61  -SLTKLFSTYNGCVWKGGRLRLEKAKEHYLARLKREWEAASSTSDNTIKAPSDS------ 113

Query: 121 NNELEENPNARRASNIPDTKQLRVFFPRLRKVKSIPFSGSGKHKYSFQNIKV-PPMPVHF 179
                           P    L +FFPRLRKVK +P SG+GKHKYSFQ + V   +P  F
Sbjct: 114 ----------------PPATHLNIFFPRLRKVKPMPLSGTGKHKYSFQRVPVSSSLPRSF 157

Query: 180 CDCEEHCSPFVKERGKVPSHGT-AXXXXXXXXXXXXMNAVMNKLFEKEKVSNTKDLEKGQ 238
           CDCEEH +  +  R ++  H   A            MN+VMNKLFEK  V   +D     
Sbjct: 158 CDCEEHSNSSLTPR-EIHLHDLEAVNVGRQEAEVNVMNSVMNKLFEKNNVDPEED----- 211

Query: 239 DSFKSPDALPLNECEVDSATDDDDDGLIINIETKKSKAALSGSHELERIMENPESWSNKT 298
                      NE E D       D LIIN+         S  ++++  ++   S   K+
Sbjct: 212 -----------NEIEADQ------DNLIINV--------ASSGNDMDSALDML-SRKRKS 245

Query: 299 RIAKEEPKESMLQVQKRSDDNHNKVKKRKPLPELESESNGCVSTTPGSKSNTKTLPDELG 358
            + K+ P E      ++ +  H   K R+ +   E+          G K  ++ +PD+  
Sbjct: 246 ILNKKTPSEEGYSEGRKGNLTH-PSKNRQTISLEETGRQESSQAIRGKKKPSEVVPDK-- 302

Query: 359 SGAHPAKVSWIQKS----------SWKELLGQGGSAAFSASLILP 393
           S   P++   +++S          SWK L+  G S  FS S  LP
Sbjct: 303 SSDEPSRTKDLEQSIDNISWSQKSSWKSLMANGNSNDFSVSSFLP 347