Miyakogusa Predicted Gene

Lj6g3v1094850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1094850.1 Non Chatacterized Hit- tr|I1MHT6|I1MHT6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56638
PE,87.76,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; NONSENSE-MEDIATED MRNA
DECAY PROTEIN 2 (UP-FRAMESHIFT SUPPRESSOR,CUFF.59123.1
         (1208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39260.1 | Symbols:  | binding;RNA binding | chr2:16392288-16...   964   0.0  

>AT2G39260.1 | Symbols:  | binding;RNA binding |
            chr2:16392288-16399588 REVERSE LENGTH=1181
          Length = 1181

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/703 (66%), Positives = 544/703 (77%), Gaps = 44/703 (6%)

Query: 486  SLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELLPYY 545
            SL+  N + LLQRLPGCVSRDLIDQLTVE+CYLNSK+NRKKLV+ALF+VPRTSLELL YY
Sbjct: 461  SLDVANFERLLQRLPGCVSRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYY 520

Query: 546  SRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIKNIRFIGELCKFKIAPAG 605
            SRMVATL++CMKD+ S+L+QMLE+EFN L++KKDQMNIETKI+NIRFIGELCKFKI PAG
Sbjct: 521  SRMVATLASCMKDIPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAG 580

Query: 606  LVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDP 665
            LVFSCLKACLD+FTHHNIDVACNLLETCGRFLYRSPET++RM NML+ILMRLKNVKNLDP
Sbjct: 581  LVFSCLKACLDEFTHHNIDVACNLLETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDP 640

Query: 666  RHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSE 725
            R STLVENAYYLCKPPERSAR++KVRPPLHQY+RKLLFSDLDK +I +VL+QLRKLPWSE
Sbjct: 641  RQSTLVENAYYLCKPPERSARISKVRPPLHQYVRKLLFSDLDKDSIANVLKQLRKLPWSE 700

Query: 726  CEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDYGM 785
            CE Y+LKCFMKV+KGKYGQIHLIASL +GLSR+HDEF VA+VDEVLEEIR+GLELN+YG 
Sbjct: 701  CEQYILKCFMKVHKGKYGQIHLIASLTSGLSRHHDEFVVAVVDEVLEEIRVGLELNEYGA 760

Query: 786  QQRRVAYMRFLGELYNYKHADSSVIFETLYLILVYGHGTPEQDVLDPPEDFFRIRLIITL 845
            QQ+R+A+MRFLGELYNY+H DSSVIFETLYL L+YGH T EQ+VLDPPEDFFR+R++I L
Sbjct: 761  QQKRLAHMRFLGELYNYEHVDSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRVRMVIIL 820

Query: 846  LETCGHYFDHGSSKRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFVDLRPNMVRYSSIX 905
            LETCGHYFD GSSK++LD+FLIHFQRYILSKG LPLD+EFDLQDLF +LRPNM RYS+I 
Sbjct: 821  LETCGHYFDRGSSKKRLDQFLIHFQRYILSKGHLPLDIEFDLQDLFANLRPNMTRYSTID 880

Query: 906  XXXXXXXXXXXHDRIVSADKASGEKQSE-KPPRRTTSSMVVGNGQSIDNGAEDNG----- 959
                        +   S DK S E+ S+ KP  +++S ++  NG+S      +NG     
Sbjct: 881  EVNAAILQLEEREHASSGDKVSIERHSDTKPSNKSSSDVISSNGKSTAKDIRENGEAHGE 940

Query: 960  -----------VQD----DVNDGEADSGSDVIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1004
                       V+D    +++DG  + GS+                              
Sbjct: 941  ESDSDSGSGSVVRDGQNEELDDGNHERGSE----------------------SGDGDDYD 978

Query: 1005 XXXXXXXXXXXVHVRQKVTEVDPLEEASFDQELKAVLQESMEQRRLELRGRPTLNMMIPM 1064
                         VRQKV  VD  E+A FDQELKA+LQESMEQR+LELRGRP LNM IPM
Sbjct: 979  DGDGPGSDDDKFRVRQKVVTVDLEEQADFDQELKALLQESMEQRKLELRGRPALNMTIPM 1038

Query: 1065 NVFEGSAKDHHGRG-TGGESGDEALDEDTDGNKEVQVKVLVKRGNKQQTKQMYIPRNSSL 1123
            +VFEGS KDHH  G   GE+G+E LDE+    +EVQVKVLVKRGNKQQT+QM IP + +L
Sbjct: 1039 SVFEGSGKDHHHFGRVVGENGEEVLDEENGEQREVQVKVLVKRGNKQQTRQMLIPSDCAL 1098

Query: 1124 VQSTXXXXXXXXXXXXDIKRLVLEYNDREEEELNGLGTQPTNW 1166
            VQST            DIKRLVLEYN+R+EEE NGLGTQ  NW
Sbjct: 1099 VQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGLGTQILNW 1141



 Score =  550 bits (1418), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 289/423 (68%), Positives = 341/423 (80%), Gaps = 9/423 (2%)

Query: 1   MDQHEDECRTGGESNSKQDDEEAVAHLEEIKKSIEAKIALRQSNLNPDRPDSGFLRTLDS 60
           MD  EDE  +      KQDDEEA+A LEEIKKSIEAK+ LRQ+NLNP+RPDS +LRTLDS
Sbjct: 1   MDHPEDESHS-----EKQDDEEALARLEEIKKSIEAKLTLRQNNLNPERPDSAYLRTLDS 55

Query: 61  SIKRNTAVIKKLKQINEELREALMDELRTVNMSKFVSEAVAAICDAKLRSSDIQAAVQIC 120
           SIKRNTAVIKKLKQINEE RE LMD+LR VN+SKFVSEAV AIC+AKL+SSDIQAAVQIC
Sbjct: 56  SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICEAKLKSSDIQAAVQIC 115

Query: 121 SLLHQRYKDFAPSLIQGLLKIFSPGKPGDESDTDKNXXXXXXXXXXXXXXXXFFVGVIED 180
           SLLHQRYK+F+ SL QGLLK+F PGK  ++ + DKN                ++VGVIED
Sbjct: 116 SLLHQRYKEFSASLTQGLLKVFFPGKSAEDLEADKNSKAMKKRSTLKLLLELYYVGVIED 175

Query: 181 GAIFITIIKDLTSVEQLKDRDATQTSLTLLSSFARQGRIFLGLSVNGPEIHEEFFKGLAI 240
             IFI IIKDLTSVEQLKDRD TQT+LTLL+SFARQGRIFLGL ++G +  E+FFKGL +
Sbjct: 176 SNIFINIIKDLTSVEQLKDRDTTQTNLTLLTSFARQGRIFLGLPISGQD--EDFFKGLDV 233

Query: 241 TADQKKVLRKACYAFYDAAAELLQSEHSSLRVMEHENSKILNAKGELSEENVASYEKLRK 300
           TADQKK  +KA   +YDA A+LLQSEH  L  ME EN+K++NAKGELSE++ +SYEKLRK
Sbjct: 234 TADQKKSFKKAFNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSYEKLRK 293

Query: 301 SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAISSASGKDSSVVEPIWDDEDTR 360
           SYDHLYRN+SSLAEALDMQPPVMPEDG TTR+T+G+EA  S + KD+SV EPIWDDEDT+
Sbjct: 294 SYDHLYRNISSLAEALDMQPPVMPEDG-TTRLTAGDEASPSGTVKDTSVPEPIWDDEDTK 352

Query: 361 AFYECLPDLRAFVPAVLLGETEPKSNEQSVKSQDQSTEILPE-SDKGQTTRESGEVSTDP 419
            FYECLPDLRAFVPAVLLGE EPKSNEQS K++++ +E   E  +  QTT ++ EVS D 
Sbjct: 353 TFYECLPDLRAFVPAVLLGEAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADS 412

Query: 420 SAL 422
           +++
Sbjct: 413 ASM 415