Miyakogusa Predicted Gene

Lj6g3v1094760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1094760.1 Non Chatacterized Hit- tr|I1MY66|I1MY66_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,88.89,0.0000000002,PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA
SUBUNIT,NULL; DEHYDROGENASE RELATED,NULL; no
description,N,CUFF.59096.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50850.1 | Symbols: MAB1 | Transketolase family protein | chr...    60   2e-10
AT5G42220.1 | Symbols:  | Ubiquitin-like superfamily protein | c...    59   6e-10

>AT5G50850.1 | Symbols: MAB1 | Transketolase family protein |
           chr5:20689671-20692976 FORWARD LENGTH=363
          Length = 363

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 32/32 (100%)

Query: 69  QMTVREALNSALDEEMSANPKVFLMGEEVGEY 100
           +MTVR+ALNSA+DEEMSA+PKVF+MGEEVG+Y
Sbjct: 35  EMTVRDALNSAIDEEMSADPKVFVMGEEVGQY 66


>AT5G42220.1 | Symbols:  | Ubiquitin-like superfamily protein |
           chr5:16872962-16877455 FORWARD LENGTH=879
          Length = 879

 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 34  RTMLTLRMGQSYAVSVVNVGPAIYISPSGPNPIMVQ 69
           RT+LTLRM  S  +S VN GPA+YISPSGPNPIMVQ
Sbjct: 367 RTILTLRMAPSPELSYVNAGPAVYISPSGPNPIMVQ 402