Miyakogusa Predicted Gene

Lj6g3v1093580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1093580.1 Non Chatacterized Hit- tr|C6T4W7|C6T4W7_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,38.68,1e-17,seg,NULL,CUFF.59095.1
         (343 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29530.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    61   1e-09
AT2G34310.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   2e-08
AT2G34310.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   2e-08
AT2G34310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   2e-08

>AT1G29530.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G34310.3); Has 84 Blast hits to 78 proteins in
           24 species: Archae - 2; Bacteria - 4; Metazoa - 9; Fungi
           - 8; Plants - 55; Viruses - 0; Other Eukaryotes - 6
           (source: NCBI BLink). | chr1:10325553-10326651 REVERSE
           LENGTH=236
          Length = 236

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 35/52 (67%)

Query: 292 PESTNGAEHAKDSETPECSENQPLVASAPHMVQKTSWLSCCGLFEVLSGSSR 343
           PE++   E  + SE P   E +PL+   P +V++TSWLSCCGLF+ ++GS R
Sbjct: 185 PETSKKVESVRKSEVPVSPEEKPLLLPGPPVVRRTSWLSCCGLFDAMTGSDR 236


>AT2G34310.3 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G29530.1); Has 236 Blast hits to 216 proteins
           in 70 species: Archae - 0; Bacteria - 10; Metazoa - 74;
           Fungi - 47; Plants - 60; Viruses - 0; Other Eukaryotes -
           45 (source: NCBI BLink). | chr2:14478564-14479812
           REVERSE LENGTH=242
          Length = 242

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 290 RNPESTNG-AEHAKDSETPECSENQPLVASAPHMVQKTSWLSCCGLFEVLSGSSR 343
           R+ E TN   ++ K+ E PECS+ + L+ S P +  +TSWLSCCGLF+V++GS R
Sbjct: 189 RSAEETNKEIKNVKEYEVPECSKEKSLLPSGPPVF-RTSWLSCCGLFDVMAGSER 242


>AT2G34310.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G29530.1); Has 236 Blast hits to 216 proteins
           in 70 species: Archae - 0; Bacteria - 10; Metazoa - 74;
           Fungi - 47; Plants - 60; Viruses - 0; Other Eukaryotes -
           45 (source: NCBI BLink). | chr2:14478564-14479812
           REVERSE LENGTH=242
          Length = 242

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 290 RNPESTNG-AEHAKDSETPECSENQPLVASAPHMVQKTSWLSCCGLFEVLSGSSR 343
           R+ E TN   ++ K+ E PECS+ + L+ S P +  +TSWLSCCGLF+V++GS R
Sbjct: 189 RSAEETNKEIKNVKEYEVPECSKEKSLLPSGPPVF-RTSWLSCCGLFDVMAGSER 242


>AT2G34310.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G29530.1); Has 1236 Blast hits to 680 proteins
           in 89 species: Archae - 0; Bacteria - 0; Metazoa - 473;
           Fungi - 0; Plants - 332; Viruses - 0; Other Eukaryotes -
           431 (source: NCBI BLink). | chr2:14478564-14479812
           REVERSE LENGTH=242
          Length = 242

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 290 RNPESTNG-AEHAKDSETPECSENQPLVASAPHMVQKTSWLSCCGLFEVLSGSSR 343
           R+ E TN   ++ K+ E PECS+ + L+ S P +  +TSWLSCCGLF+V++GS R
Sbjct: 189 RSAEETNKEIKNVKEYEVPECSKEKSLLPSGPPVF-RTSWLSCCGLFDVMAGSER 242