Miyakogusa Predicted Gene

Lj6g3v1093300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1093300.1 Non Chatacterized Hit- tr|F2UL24|F2UL24_SALS5
Putative uncharacterized protein OS=Salpingoeca sp.
(s,30.83,0.0000002,PRKCSH,Glucosidase II beta subunit-like;
OS-9-RELATED,NULL; Mannose 6-phosphate receptor
domain,Mann,CUFF.59074.1
         (298 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35080.1 | Symbols:  | INVOLVED IN: biological_process unknow...   343   8e-95

>AT5G35080.1 | Symbols:  | INVOLVED IN: biological_process unknown;
           LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding
           (InterPro:IPR009011), Glucosidase II beta subunit-like
           (InterPro:IPR012913); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:13354552-13356725 REVERSE LENGTH=282
          Length = 282

 Score =  343 bits (880), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 167/286 (58%), Positives = 213/286 (74%), Gaps = 22/286 (7%)

Query: 5   TRALILLLIF-----THAFAEQIFPVHIASIFXXXXXXXXTSSSREPKYKIEFHPEDSPF 59
           T+ L+ L+I      +H +++QIFP H+   F        + ++REPKYKIEF PEDSPF
Sbjct: 4   TQILLCLVIVALSSSSHVWSDQIFPAHLVGTF--------SRNNREPKYKIEFLPEDSPF 55

Query: 60  HPEDDQESIIMPDKNGQKFVCYLPKVEREKSGKPVIQHNVSSMIVETEKRVKQKTPDELL 119
           HP D+ ES++M DK+G +F+CYLPK E+  SG    Q N+S++++ET++ VK KTPDELL
Sbjct: 56  HPGDNLESMVMLDKHGNRFLCYLPKEEKATSGWTSSQQNISTVMMETQQLVKLKTPDELL 115

Query: 120 EVLKGPCFLRQEGWWSYEFCYQKRLRQLHLED-DKVVQEFVLGVYDPEATAAFNQNLSDI 178
           + L   C  RQEGWWSYEFC+QK +RQLH+ED +K+VQEF LG +DPEATAAFNQ +SD 
Sbjct: 116 QPLSEKCLFRQEGWWSYEFCHQKYVRQLHVEDENKIVQEFFLGTFDPEATAAFNQTVSDA 175

Query: 179 STLKDPRSKDASQRYHAHQYTNGTICDLTNKPRETEVRFVCSEPRAMISSITEISTCKYA 238
           ST       DASQRYH+H YTNGT CDLT  PRE EVRFVC+E RAM++SITE+STCKYA
Sbjct: 176 ST-------DASQRYHSHVYTNGTTCDLTGSPREVEVRFVCAETRAMVTSITELSTCKYA 228

Query: 239 LTIQCPTLCKHPLFQEERPVWHTIDCNVLPKDYKDAKGRQENRDVE 284
           LT+QCPTLCKHPLFQ E+PV HTI CN +P + +DA   +E + V+
Sbjct: 229 LTVQCPTLCKHPLFQLEKPVSHTIHCNAIPVE-EDATRNKEEQAVD 273