Miyakogusa Predicted Gene
- Lj6g3v1092210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1092210.1 CUFF.59067.1
(226 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 333 4e-92
AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma me... 295 1e-80
AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 251 3e-67
AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 236 1e-62
AT5G67550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 73 2e-13
>AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G25270.1);
Has 177 Blast hits to 172 proteins in 23 species: Archae
- 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
| chr2:5005144-5008140 REVERSE LENGTH=541
Length = 541
Score = 333 bits (855), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 152/226 (67%), Positives = 184/226 (81%)
Query: 1 MLFVAFLGFLFSIFGLQGLVYFLVIVGWILVAGTFILCGVFLFLHNVVADSCVAMDEWVL 60
MLF+AF+GFL SIFGLQ LVY LVI+GWILV TF+LCG FL LHNVV D+CVAMD+WV
Sbjct: 264 MLFLAFIGFLLSIFGLQCLVYTLVILGWILVTVTFVLCGGFLLLHNVVGDTCVAMDQWVQ 323
Query: 61 NPTAHTALDEILPCVDNATAQQTLLQSRDVTHELVNLVDKIINTVTNRNLPPAAGSLYYN 120
NPTAHTALD+ILPCVDNATA++TL +++ VT++LVNL+D I+ +TNRN PP LYYN
Sbjct: 324 NPTAHTALDDILPCVDNATARETLTRTKLVTYQLVNLLDNAISNMTNRNFPPQFRPLYYN 383
Query: 121 QSGPLMPVLCNPYNPNLTTRSCAPGEVPVDNAREVWKNYTCQVSPAGICATPGRMTPTIY 180
QSGPLMP+LCNP+N +L+ R C PG+V ++NA EVWKN+TCQ+ G C+TPGR+TP +Y
Sbjct: 384 QSGPLMPLLCNPFNADLSDRQCQPGQVHLNNATEVWKNFTCQIVTPGTCSTPGRLTPKLY 443
Query: 181 GQFEAAVNISYGLYHYVPFLVDLQDCTFVRETFTDISNQYCPGLRR 226
Q AAVN+SYGLY Y PFL DLQ C FVR TFTDI +CPGL+R
Sbjct: 444 SQMAAAVNVSYGLYKYGPFLADLQGCDFVRSTFTDIERDHCPGLKR 489
>AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G12400.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr2:10759779-10762358 FORWARD
LENGTH=545
Length = 545
Score = 295 bits (756), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 133/226 (58%), Positives = 172/226 (76%)
Query: 1 MLFVAFLGFLFSIFGLQGLVYFLVIVGWILVAGTFILCGVFLFLHNVVADSCVAMDEWVL 60
ML V FLG + SIFG+Q +VY LVI+GWILV GTFIL G FL LHN AD+CVAM EWV
Sbjct: 269 MLVVTFLGLVSSIFGMQVIVYTLVILGWILVTGTFILSGTFLVLHNATADTCVAMSEWVE 328
Query: 61 NPTAHTALDEILPCVDNATAQQTLLQSRDVTHELVNLVDKIINTVTNRNLPPAAGSLYYN 120
P+++TALDEILPC DNATAQ+TL++SR+VT +LV L++ +I V+N N P +YYN
Sbjct: 329 RPSSNTALDEILPCTDNATAQETLMRSREVTGQLVELINTVITNVSNINFSPVFVPMYYN 388
Query: 121 QSGPLMPVLCNPYNPNLTTRSCAPGEVPVDNAREVWKNYTCQVSPAGICATPGRMTPTIY 180
QSGPL+P+LCNP+N +LT RSC+PG++ ++NA E W ++ CQVS G C T GR+TP +Y
Sbjct: 389 QSGPLLPLLCNPFNHDLTDRSCSPGDLDLNNATEAWTSFVCQVSQNGTCTTTGRLTPALY 448
Query: 181 GQFEAAVNISYGLYHYVPFLVDLQDCTFVRETFTDISNQYCPGLRR 226
Q + VNIS GL PFLV LQDC++ ++TF DI+N +CPGL+R
Sbjct: 449 SQMASGVNISTGLIRDAPFLVQLQDCSYAKQTFRDITNDHCPGLQR 494
>AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits
to 169 proteins in 21 species: Archae - 0; Bacteria - 0;
Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other
Eukaryotes - 5 (source: NCBI BLink). |
chr1:26818244-26820852 FORWARD LENGTH=557
Length = 557
Score = 251 bits (641), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 119/226 (52%), Positives = 154/226 (68%), Gaps = 1/226 (0%)
Query: 1 MLFVAFLGFLFSIFGLQGLVYFLVIVGWILVAGTFILCGVFLFLHNVVADSCVAMDEWVL 60
ML ++F+G L S+ Q +V+ V+ GWILVA TF+LCGVFL L+N ++D+CVAM EWV
Sbjct: 265 MLILSFVGLLLSVLRHQHVVHIFVVSGWILVAVTFVLCGVFLILNNAISDTCVAMKEWVD 324
Query: 61 NPTAHTALDEILPCVDNATAQQTLLQSRDVTHELVNLVDKIINTVTNRNLPPAAGSLYYN 120
NP A TAL ILPCVD T QTL QS+ V + +V +V+ + V N N P YYN
Sbjct: 325 NPHAETALSSILPCVDQQTTNQTLSQSKVVINSIVTVVNTFVYAVANTN-PAPGQDRYYN 383
Query: 121 QSGPLMPVLCNPYNPNLTTRSCAPGEVPVDNAREVWKNYTCQVSPAGICATPGRMTPTIY 180
QSGP MP LC P++ N+ R C+P E+ ++NA VW+NY C+V+P+GIC T GR+TP +
Sbjct: 384 QSGPPMPPLCIPFDANMEDRQCSPWELSIENASSVWENYKCEVTPSGICTTVGRVTPDTF 443
Query: 181 GQFEAAVNISYGLYHYVPFLVDLQDCTFVRETFTDISNQYCPGLRR 226
GQ AAVN SY L HY P L+ +DC FVRETF I++ YCP L R
Sbjct: 444 GQLVAAVNESYALEHYTPPLLSFRDCNFVRETFMSITSDYCPPLVR 489
>AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G12400.1); Has 175 Blast hits to 171 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2;
Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:30281638-30284258 REVERSE
LENGTH=538
Length = 538
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 151/224 (67%)
Query: 1 MLFVAFLGFLFSIFGLQGLVYFLVIVGWILVAGTFILCGVFLFLHNVVADSCVAMDEWVL 60
ML VAFLG LFS GL+ LVY LVI+GWILV T +L VFL HNVVAD+C+AMD+WV
Sbjct: 267 MLAVAFLGLLFSFCGLRVLVYLLVILGWILVTATILLSAVFLVFHNVVADTCMAMDQWVH 326
Query: 61 NPTAHTALDEILPCVDNATAQQTLLQSRDVTHELVNLVDKIINTVTNRNLPPAAGSLYYN 120
+P A +AL ++LPC+D T +TL ++ +T V++ + V+N + P Y+N
Sbjct: 327 DPAADSALSQLLPCLDPKTIGETLDITKTMTATAVDMTNAYTVNVSNHDQFPPNAPFYHN 386
Query: 121 QSGPLMPVLCNPYNPNLTTRSCAPGEVPVDNAREVWKNYTCQVSPAGICATPGRMTPTIY 180
QSGPL+P+LCNP + N R CAP EV + NA +V+K Y CQV+ GIC T GR+T Y
Sbjct: 387 QSGPLVPLLCNPLDQNHKPRPCAPDEVLLANASQVYKGYICQVNAEGICTTQGRLTQGSY 446
Query: 181 GQFEAAVNISYGLYHYVPFLVDLQDCTFVRETFTDISNQYCPGL 224
Q A+N+++ L HY PFL + DCTFVR+TF DI+ + CPGL
Sbjct: 447 DQMMGAINVAFTLDHYGPFLASIADCTFVRDTFRDITTKNCPGL 490
>AT5G67550.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: flower; EXPRESSED DURING: 4
anthesis; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits
to 154 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr5:26946908-26949112 REVERSE LENGTH=509
Length = 509
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 96/210 (45%), Gaps = 11/210 (5%)
Query: 23 LVIVGWILVAGTFILCGVFLFLHNVVADSCVAMDEWVLNPTAHTALDEILPCVDNATAQQ 82
++ + WI+ ++L G F+H D C A + +V NP T L + PC+D + +
Sbjct: 250 VIFLCWIITTLCWVLTGFDFFIHTFAEDLCSAFNGFVQNPRNST-LTNLFPCMDPLHSDK 308
Query: 83 TLLQSRDVTHELV-NLVDKIINTVTNRNLPPAAGSLYYNQSGPLMPVLCNPYNP----NL 137
TL++ + H + L K+ ++ + L + ++ + P ++C+P+ +
Sbjct: 309 TLIEISLMIHNFITQLNSKVAESMRSNALTDRSNTVSW---APESGIICDPFVGQQINSY 365
Query: 138 TTRSCAPGEVPVDNAREVWKNYTCQ-VSPAGICATPGRMTP-TIYGQFEAAVNISYGLYH 195
T +SC+ G +P+ + +TC P C G+ P Y + A N + G+
Sbjct: 366 TPQSCSNGAIPIGEFPNILSRFTCHDKDPPETCRITGKFIPEAAYLKVYAYSNSAQGMLD 425
Query: 196 YVPFLVDLQDCTFVRETFTDISNQYCPGLR 225
+P +L +C V++T + I + C R
Sbjct: 426 ILPSFQNLTECLAVKDTLSSIVSNQCDPFR 455