Miyakogusa Predicted Gene

Lj6g3v1078320.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1078320.3 tr|A9T0I3|A9T0I3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_234584,25.75,3e-18,Reticulon,Reticulon; seg,NULL;
UNKNOWN PROTEIN,NULL; RETICULON,Reticulon,CUFF.58986.3
         (409 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58000.1 | Symbols:  | Reticulon family protein | chr5:234774...   295   4e-80
AT2G20590.1 | Symbols:  | Reticulon family protein | chr2:886724...   145   4e-35
AT4G28430.1 | Symbols:  | Reticulon family protein | chr4:140578...   138   9e-33
AT2G20590.2 | Symbols:  | Reticulon family protein | chr2:886778...   102   4e-22

>AT5G58000.1 | Symbols:  | Reticulon family protein |
           chr5:23477416-23479496 FORWARD LENGTH=487
          Length = 487

 Score =  295 bits (755), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 144/275 (52%), Positives = 189/275 (68%), Gaps = 7/275 (2%)

Query: 93  RFHHRNERKPVSVPVALKPSPTVRRNSTIYQNFSEPKSIPKAEEYYGDSVPPCFPQTQSK 152
           +F +R    P SV   + P P ++R +++Y   S P +   + + + +     F  +QSK
Sbjct: 173 QFQNRTSPSPSSVR-KISP-PVIKRATSVY---SAPPNSTSSTDRFAEQ-EDNFTHSQSK 226

Query: 153 LQSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVYLAVIFLYRA 212
           LQSLVDL+MWRD SR                YA D+N S ISV++Y+GL+YL ++F+ ++
Sbjct: 227 LQSLVDLVMWRDVSRSTLVFGFGTFLIISSSYANDLNFSFISVVAYMGLIYLGLMFVLKS 286

Query: 213 LICRGVIEVEDSNYV-LREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFV 271
           LI RG++E E    V +RE+D   MLRLI+PYLNE L +L+ALFSGDP TT+K+ V+LFV
Sbjct: 287 LIHRGMVEEERHKVVGVREEDVKRMLRLIMPYLNESLHQLRALFSGDPSTTLKMGVVLFV 346

Query: 272 LARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVA 331
           LARCGS IT+W +AKFGF G FT+PKI  SYS   +AY NFW+RRFRDAW+SC HKKAVA
Sbjct: 347 LARCGSSITLWNLAKFGFLGAFTIPKIFISYSTHFSAYGNFWMRRFRDAWESCNHKKAVA 406

Query: 332 LGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYL 366
           L +F LVWNLSSV AR+WA F+L VAFRYYQ   +
Sbjct: 407 LALFTLVWNLSSVTARVWAAFMLLVAFRYYQHKMI 441


>AT2G20590.1 | Symbols:  | Reticulon family protein |
           chr2:8867243-8869166 REVERSE LENGTH=431
          Length = 431

 Score =  145 bits (367), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 1/207 (0%)

Query: 158 DLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVYLAVIFLYRALICRG 217
           DL+MWRD ++                +AK +N S+ S +S +GLV L   FL   L C+ 
Sbjct: 170 DLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSNTL-CQR 228

Query: 218 VIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFVLARCGS 277
             E     + + EDD +   R +LP  N F+S+   LFSG+P  T+K+   L + A  G 
Sbjct: 229 KNEDTKRAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLGAEYGH 288

Query: 278 FITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGL 337
            IT+W+++ FGFF  FT+PK+ S Y+ Q++        R  +AW  C+HKK +A      
Sbjct: 289 LITLWRLSAFGFFLSFTIPKLYSCYTHQISQKVERVKTRIGEAWGVCSHKKILAGSAVTA 348

Query: 338 VWNLSSVVARIWAVFVLFVAFRYYQQH 364
            WNL+S+  RI+AVF++ V FRY +Q+
Sbjct: 349 FWNLTSIRTRIFAVFIILVIFRYRRQN 375


>AT4G28430.1 | Symbols:  | Reticulon family protein |
           chr4:14057846-14059772 FORWARD LENGTH=457
          Length = 457

 Score =  138 bits (347), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 83/212 (39%), Positives = 117/212 (55%), Gaps = 2/212 (0%)

Query: 154 QSLVDLIMWRDFSRXXXXXXXXXXXXXXXXYA-KDINLSLISVISYIGLVYLAVIFLYRA 212
           +++ DLIMWRD ++                +A K  N S+ S ISY+GL++L V FL   
Sbjct: 193 ENISDLIMWRDVAKSTLWFGFGCICFLSTCFAAKGFNFSVFSAISYLGLLFLGVSFLSNT 252

Query: 213 LICRGVIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFVL 272
           L  R V E       L EDD + + R +LP  N  +S+   LFSG+P  T+K+A  + + 
Sbjct: 253 LRQR-VTEEARRELKLSEDDVLRIARRMLPITNLAISKTSELFSGEPAMTLKVAPFVLMG 311

Query: 273 ARCGSFITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVAL 332
           A  G  IT+W++  FGFF  FT+PK+ S Y++QL        RRF +AW  CTHKK VA 
Sbjct: 312 AEYGYLITLWRLCAFGFFLSFTIPKLYSCYASQLNQKVECAQRRFVEAWGVCTHKKFVAG 371

Query: 333 GIFGLVWNLSSVVARIWAVFVLFVAFRYYQQH 364
                 WNL+S+  R  AVF++ V  RY +Q+
Sbjct: 372 SAVTAFWNLTSLKTRFIAVFIIVVVIRYRRQN 403


>AT2G20590.2 | Symbols:  | Reticulon family protein |
           chr2:8867781-8869166 REVERSE LENGTH=323
          Length = 323

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 1/150 (0%)

Query: 158 DLIMWRDFSRXXXXXXXXXXXXXXXXYAKDINLSLISVISYIGLVYLAVIFLYRALICRG 217
           DL+MWRD ++                +AK +N S+ S +S +GLV L   FL   L C+ 
Sbjct: 170 DLVMWRDVAKSTLWFGFGCLSFLSSCFAKGVNFSVFSAVSNLGLVLLCGSFLSNTL-CQR 228

Query: 218 VIEVEDSNYVLREDDAIWMLRLILPYLNEFLSRLKALFSGDPGTTIKLAVLLFVLARCGS 277
             E     + + EDD +   R +LP  N F+S+   LFSG+P  T+K+   L + A  G 
Sbjct: 229 KNEDTKRAFHVSEDDVLRSARRVLPATNFFISKTSELFSGEPSMTLKVTPFLLLGAEYGH 288

Query: 278 FITIWKMAKFGFFGVFTVPKICSSYSAQLT 307
            IT+W+++ FGFF  FT+PK+ S Y+ Q++
Sbjct: 289 LITLWRLSAFGFFLSFTIPKLYSCYTHQIS 318