Miyakogusa Predicted Gene

Lj6g3v1078200.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1078200.1 Non Chatacterized Hit- tr|B9FM15|B9FM15_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,33.94,0.0000008,RRM,RNA recognition motif domain; seg,NULL; RNA
recognition motif,RNA recognition motif domain; FAMI,CUFF.58970.1
         (329 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19030.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    51   1e-06

>AT5G19030.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:6357503-6359081 REVERSE LENGTH=172
          Length = 172

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%)

Query: 130 YVDGLSDRITLIKLKTIFGKAGRVKDVXXXXXXXXXXXXXYGFVRFQNDEEAWRAIRTLN 189
           +V G SD ++  +LK +F + G+V +V             YG+V F + E+A  A+  +N
Sbjct: 80  FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139

Query: 190 GLRIDGNYLVVKRANP 205
           G   DG +++VK   P
Sbjct: 140 GKFFDGRFILVKFGQP 155