Miyakogusa Predicted Gene

Lj6g3v1078170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1078170.1 Non Chatacterized Hit- tr|B8LZ38|B8LZ38_TALSN 26S
proteasome non-ATPase regulatory subunit Nas2, put,31.28,4e-19,PDZ
domain-like,PDZ domain; no description,NULL; SUBFAMILY NOT NAMED,NULL;
26S PROTEASOME NON-ATPASE,NODE_38753_length_776_cov_45.021908.path2.1
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57950.1 | Symbols:  | 26S proteasome regulatory subunit, put...   256   6e-69

>AT5G57950.1 | Symbols:  | 26S proteasome regulatory subunit,
           putative | chr5:23460765-23462128 FORWARD LENGTH=227
          Length = 227

 Score =  256 bits (655), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 164/230 (71%), Gaps = 5/230 (2%)

Query: 1   MVATNVKAETMSLMDKRTSLEAEMNAIITHLTQPGAPGLSGNLIDSEGFPRSDIDIPAVX 60
           MV  N+KAETM+LMDKRT++E EMN+I+  L  PG PGLSGNLIDSEGFPR DIDIP V 
Sbjct: 1   MVGANLKAETMALMDKRTAMETEMNSIVERLCNPGGPGLSGNLIDSEGFPREDIDIPMVR 60

Query: 61  XXXXXXXXXXNDHKEVTEKINQNIQILHSAR--LGKSPFKNSGNDEGSDTQTSTAVDTLA 118
                     ++H E+TEKIN NIQILHS R     S  K+SG +E S   +  AV++L+
Sbjct: 61  TERRRLAELRSEHGEITEKINVNIQILHSVRPTSRASSTKDSGPEETS--LSGAAVNSLS 118

Query: 119 STPGQNVLLRQNPNSMDVDVLVSRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDD 178
           ++  Q          MDVDV+ S PFAMVDEI ++SPA E GLQLGDQ+LKFGNVE GD+
Sbjct: 119 ASM-QTSGFSVTSGPMDVDVVTSIPFAMVDEINESSPAAEGGLQLGDQVLKFGNVEGGDN 177

Query: 179 LLQRLSSESQSNLDRPIPVVITRQGTVVNLTITPRTWQGRGLLGCHFRIL 228
           LLQRL++E+QSN  + + V + RQG  V L++TPR WQGRGLLGCHFR++
Sbjct: 178 LLQRLAAEAQSNQGQAVSVQVMRQGAKVVLSVTPRIWQGRGLLGCHFRLV 227