Miyakogusa Predicted Gene
- Lj6g3v1077660.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1077660.1 Non Chatacterized Hit- tr|I1KDE5|I1KDE5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,86.8,0,seg,NULL; no
description,Signal recognition particle, SRP54 subunit, helical
bundle; no description,,CUFF.58953.1
(586 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30600.1 | Symbols: | signal recognition particle receptor a... 818 0.0
AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast... 95 1e-19
AT1G48900.2 | Symbols: | Signal recognition particle, SRP54 sub... 87 4e-17
AT1G48900.1 | Symbols: | Signal recognition particle, SRP54 sub... 87 5e-17
AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition p... 84 3e-16
AT2G45770.1 | Symbols: CPFTSY, FRD4 | signal recognition particl... 77 3e-14
AT5G49500.1 | Symbols: | Signal recognition particle, SRP54 sub... 74 4e-13
AT2G45770.2 | Symbols: CPFTSY | signal recognition particle rece... 70 4e-12
>AT4G30600.1 | Symbols: | signal recognition particle receptor
alpha subunit family protein | chr4:14938142-14940600
REVERSE LENGTH=634
Length = 634
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/599 (71%), Positives = 468/599 (78%), Gaps = 17/599 (2%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASFNYDAPGASYTLK 60
MLEQLLIFTRGGLILWTCKE+GNALKGSPIDTLIRSCLLEERSGA SFNYDAPGA+YTLK
Sbjct: 1 MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60
Query: 61 WTFHNELGLVFVAVYQKILHLLYVEDLLAMVKREFSQVYDPTRTAYDGFDETFRQLKMEA 120
WTFHN+LGLVFVAVYQ+ILHLLYV+DLL+MVK+ FS+VYDP R AYD FDETFRQL++EA
Sbjct: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAYDDFDETFRQLRIEA 120
Query: 121 LARAEDLKKSNPXXXXXXXXXXXXXXXX---XXXXXXXXSDGSVKNDGGADGENGKGRKL 177
ARAE+L+K+ S+G K D G G K L
Sbjct: 121 EARAEELRKTKQVGKPVTSVKKQGQVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAKVSTL 180
Query: 178 ENGHSNGNFVASKDTNMNSVNVNGRENTSSDDVGAFDVNKLQKLRSKGGK------KTDT 231
NGHSNGN D+ + NG+ENTSS+ A D++KLQKLRSKG + KTD+
Sbjct: 181 TNGHSNGNHQMEDDSQETNDLANGKENTSSN--VAVDLSKLQKLRSKGVRGRGGVRKTDS 238
Query: 232 VA-KASK-AEPNKKVTKKNRVWNDAAVPEKKLDFTDHSGEDGDRN-IDFVAPIQGESMMX 288
+ K+SK AEP KK TKKNRVW+DAA + KLDFTD E+G+ + +D VA QGESMM
Sbjct: 239 IGNKSSKVAEPAKKATKKNRVWDDAAPKQSKLDFTDSIDENGNNDHVDIVAADQGESMMD 298
Query: 289 XXXXXXXXXXXXXXXXXXAGKNSKPG-TKSKGWFSSMFQSIAGKANLEKSDLEPALKALK 347
G + KP K KGWFSS+FQSI GKANLE++DL PALKALK
Sbjct: 299 KEEVFSSDSESEDDDE--PGSDEKPAQAKKKGWFSSVFQSITGKANLERTDLGPALKALK 356
Query: 348 DRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDIL 407
+RLMTKNVAEEIAEKLCESV ASLEGKKL+SFTRISSTVQAAMEDALVRILTPRRSIDIL
Sbjct: 357 ERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDIL 416
Query: 408 RDVHAAREQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLR 467
RDVHAA+EQRKPY KSTNLAKVAYWL QH VSVMMAACDTFRSGAVEQLR
Sbjct: 417 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLR 476
Query: 468 THARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLI 527
THARRLQIPIFEKGYEKDPA+VAKEAIQEA+RNGSDVVLVDTAGRMQDNEPLMRALSKLI
Sbjct: 477 THARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLI 536
Query: 528 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVG 586
LN PDLVLFVGEALVGNDAVDQLSKFNQKL+DL+TS NPRLIDGILLTKFDTIDDKVG
Sbjct: 537 NLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVG 595
>AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast
signal recognition particle 54 kDa subunit |
chr5:1060265-1063257 REVERSE LENGTH=564
Length = 564
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 126/261 (48%), Gaps = 17/261 (6%)
Query: 319 GWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 378
G + + + G+ L K ++ ++ ++ L+ +V+ + + +SV+ G +
Sbjct: 83 GGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIR 142
Query: 379 FTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAREQRKPYXXXXXXXXXXXKSTNLAK 438
+ + + D LV+++ S ++ A+ P K+T AK
Sbjct: 143 GVKPDQQLVKIVHDELVKLMGGEVS-----ELQFAKS--GPTVILLAGLQGVGKTTVCAK 195
Query: 439 VAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEAS 498
+A +L + S M+ A D +R A++QL ++ +P++ G + PA +AK+ ++EA
Sbjct: 196 LACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAK 255
Query: 499 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 558
+N DVV++DTAGR+Q ++ +M L + NP VL V +A+ G +A ++ FN ++
Sbjct: 256 KNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEI 315
Query: 559 ADLATSPNPRLIDGILLTKFD 579
I G +LTK D
Sbjct: 316 G----------ITGAILTKLD 326
>AT1G48900.2 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr1:18085031-18087743 REVERSE
LENGTH=431
Length = 431
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 432 KSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAK 491
K+T K AY+ + + DTFR+GA +QL+ +A + +IP + E DP +A
Sbjct: 114 KTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAV 173
Query: 492 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 551
E + + D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ
Sbjct: 174 EGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQA 233
Query: 552 SKFNQKLADLATSPNPRLIDGILLTKFD 579
F Q +A + +++TK D
Sbjct: 234 QAFKQSVA----------VGAVIITKMD 251
>AT1G48900.1 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr1:18084972-18087743 REVERSE
LENGTH=495
Length = 495
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 432 KSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAK 491
K+T K AY+ + + DTFR+GA +QL+ +A + +IP + E DP +A
Sbjct: 114 KTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAV 173
Query: 492 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 551
E + + D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ
Sbjct: 174 EGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQA 233
Query: 552 SKFNQKLADLATSPNPRLIDGILLTKFD 579
F Q +A + +++TK D
Sbjct: 234 QAFKQSVA----------VGAVIITKMD 251
>AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition
particle 54 kDa subunit | chr1:5269173-5271947 REVERSE
LENGTH=479
Length = 479
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 17/230 (7%)
Query: 350 LMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILRD 409
L+ +V+ + EK+ ++ + LA+ ++ A+ L R+L P +
Sbjct: 39 LLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKP------ 92
Query: 410 VHAAREQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNVSVMMAACDTFRSGAVEQLRTH 469
A ++ KP K+T K AY+ + + DTFR+GA +QL+ +
Sbjct: 93 -AFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQN 151
Query: 470 ARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL 529
A + +IP + E DP +A E + + D+++VDT+GR + L + ++
Sbjct: 152 ATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEA 211
Query: 530 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFD 579
PDLV+FV ++ +G A +Q F + ++ + +++TK D
Sbjct: 212 TEPDLVIFVMDSSIGQAAFEQAEAFKETVS----------VGAVIITKMD 251
>AT2G45770.1 | Symbols: CPFTSY, FRD4 | signal recognition particle
receptor protein, chloroplast (FTSY) |
chr2:18851248-18853402 FORWARD LENGTH=366
Length = 366
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 120/255 (47%), Gaps = 30/255 (11%)
Query: 333 NLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMED 392
NL ++D L L++ L+ + +I ++ E + + KL S S ++ A+++
Sbjct: 89 NLAETD--RVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKE 142
Query: 393 ALVRILTPRRSIDILRDVHAAREQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHNVSVMM 452
+++ +L + S L+ RKP K+T+L K+A+ L V+M
Sbjct: 143 SVLEMLAKKNSKTELQLGF-----RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 197
Query: 453 AACDTFRSGAVEQLRTHARRLQIPI-FEKGYEKDPAIVAKEAIQEASRNGSDVVLVDTAG 511
AA DTFR+ A +QL A R I +G + A V +A++ G DVVL DT+G
Sbjct: 198 AAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSG 257
Query: 512 RMQDNEPLM-------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATS 564
R+ N LM +A+ K++ P+ +L V + G + + Q +FN+ +
Sbjct: 258 RLHTNYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAREFNEVVG----- 311
Query: 565 PNPRLIDGILLTKFD 579
I G++LTK D
Sbjct: 312 -----ITGLILTKLD 321
>AT5G49500.1 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr5:20077556-20080206 REVERSE
LENGTH=497
Length = 497
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 452 MAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSDVVLVDTAG 511
+ DTFR+GA +QL+ +A + +IP + DP +A E + + D+++VDT+G
Sbjct: 136 LVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSG 195
Query: 512 RMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLID 571
R + L + ++ PDLV+FV ++ +G A +Q F Q +A +
Sbjct: 196 RHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVA----------VG 245
Query: 572 GILLTKFD 579
+++TK D
Sbjct: 246 AVIITKMD 253
>AT2G45770.2 | Symbols: CPFTSY | signal recognition particle
receptor protein, chloroplast (FTSY) |
chr2:18851248-18853402 FORWARD LENGTH=373
Length = 373
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 37/262 (14%)
Query: 333 NLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMED 392
NL ++D L L++ L+ + +I ++ E + + KL S S ++ A+++
Sbjct: 89 NLAETD--RVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKE 142
Query: 393 ALVRILTPRRSIDILRDVHAAREQRKPYXXXXXXXXXXXKSTNL-------AKVAYWLLQ 445
+++ +L + S L+ RKP K+T+L K+A+ L
Sbjct: 143 SVLEMLAKKNSKTELQLGF-----RKPAVIMIVGVNGGGKTTSLDSGFCFSGKLAHRLKN 197
Query: 446 HNVSVMMAACDTFRSGAVEQLRTHARRLQIPIF-EKGYEKDPAIVAKEAIQEASRNGSDV 504
V+MAA DTFR+ A +QL A R I +G + A V +A++ G DV
Sbjct: 198 EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDV 257
Query: 505 VLVDTAGRMQDNEPLM-------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 557
VL DT+GR+ N LM +A+ K++ P+ +L V + G + + Q +FN+
Sbjct: 258 VLCDTSGRLHTNYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAREFNEV 316
Query: 558 LADLATSPNPRLIDGILLTKFD 579
+ I G++LTK D
Sbjct: 317 VG----------ITGLILTKLD 328