Miyakogusa Predicted Gene

Lj6g3v1077630.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1077630.1 tr|B0CCD4|B0CCD4_ACAM1 Nucleoid-associated
protein AM1_1798 OS=Acaryochloris marina (strain MBIC
110,47,0.000000000000006,YbaB-like,YbaB-like DNA-binding protein; no
description,YbaB-like DNA-binding protein; YbaB_DNA_bd,Y,CUFF.58937.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24020.1 | Symbols:  | Uncharacterised BCR, YbaB family COG07...   224   2e-59
AT2G24020.2 | Symbols:  | Uncharacterised BCR, YbaB family COG07...   224   3e-59
AT4G30620.1 | Symbols:  | Uncharacterised BCR, YbaB family COG07...   223   7e-59

>AT2G24020.1 | Symbols:  | Uncharacterised BCR, YbaB family COG0718
           | chr2:10217869-10219269 REVERSE LENGTH=182
          Length = 182

 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 124/144 (86%), Gaps = 3/144 (2%)

Query: 48  KAGHGQRHLRLYGLFGG---KKDGDDSPNKGGILGNMQNLYETVKKAQMVVQVEAVRVQK 104
           K+ +G R LR+ GLFGG     + +D  +K GI GNMQN+YETVKKAQMVVQVEAVRVQK
Sbjct: 39  KSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQK 98

Query: 105 ELAAAEFDGYCEGELVKVTLSGNQQPLRTEITEAAMEFGSEKLSLLITEAYKDAHQKSVQ 164
           ELAAAEFDGYC GELVKVTLSGNQQP+RT+ITEAAME GSEKLS L+TEAYKDAH KSV 
Sbjct: 99  ELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSVV 158

Query: 165 AMKERMSDLAQSLGVPEGINEGMK 188
           AMKERMSDLAQSLG+P G++EGMK
Sbjct: 159 AMKERMSDLAQSLGMPPGLSEGMK 182


>AT2G24020.2 | Symbols:  | Uncharacterised BCR, YbaB family COG0718
           | chr2:10217869-10219269 REVERSE LENGTH=180
          Length = 180

 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 124/144 (86%), Gaps = 3/144 (2%)

Query: 48  KAGHGQRHLRLYGLFGG---KKDGDDSPNKGGILGNMQNLYETVKKAQMVVQVEAVRVQK 104
           K+ +G R LR+ GLFGG     + +D  +K GI GNMQN+YETVKKAQMVVQVEAVRVQK
Sbjct: 37  KSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQK 96

Query: 105 ELAAAEFDGYCEGELVKVTLSGNQQPLRTEITEAAMEFGSEKLSLLITEAYKDAHQKSVQ 164
           ELAAAEFDGYC GELVKVTLSGNQQP+RT+ITEAAME GSEKLS L+TEAYKDAH KSV 
Sbjct: 97  ELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSVV 156

Query: 165 AMKERMSDLAQSLGVPEGINEGMK 188
           AMKERMSDLAQSLG+P G++EGMK
Sbjct: 157 AMKERMSDLAQSLGMPPGLSEGMK 180


>AT4G30620.1 | Symbols:  | Uncharacterised BCR, YbaB family COG0718
           | chr4:14948724-14950035 REVERSE LENGTH=180
          Length = 180

 Score =  223 bits (568), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 128/144 (88%), Gaps = 3/144 (2%)

Query: 47  RKAGHGQRHLRLYGLFGG-KKDG-DDSPNKGGILGNMQNLYETVKKAQMVVQVEAVRVQK 104
           +++G+  R LR+ GLFGG KKD  +D  +K GILGNMQNLYETVKKAQMVVQVEAVRVQK
Sbjct: 38  KQSGNNNRSLRVNGLFGGGKKDNKEDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQK 97

Query: 105 ELAAAEFDGYCEGELVKVTLSGNQQPLRTEITEAAMEFGSEKLSLLITEAYKDAHQKSVQ 164
           ELA AEFDGYC+GELVKVTLSGNQQP+RT+IT+AAME GSEKLSLL+TEAYKDAH KSV 
Sbjct: 98  ELAVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVL 157

Query: 165 AMKERMSDLAQSLGVPEGINEGMK 188
           AMKERMSDLAQSLG+P G+ +G+K
Sbjct: 158 AMKERMSDLAQSLGMPPGL-DGLK 180