Miyakogusa Predicted Gene
- Lj6g3v1077560.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1077560.2 tr|Q9FJM4|Q9FJM4_ARATH Emb|CAB79781.1
OS=Arabidopsis thaliana PE=4
SV=1,34.23,0.000000000000006,coiled-coil,NULL,CUFF.58929.2
(255 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57910.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 108 3e-24
AT4G30630.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 58 6e-09
>AT5G57910.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G30630.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:23451259-23452463 REVERSE LENGTH=207
Length = 207
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 127/263 (48%), Gaps = 64/263 (24%)
Query: 1 MKKMKGVVVSVDSPVYEDQRTRLRHQSLLQDYEDLLEDTNSMRMKLQAAKQKRLTLSAEV 60
M G ++S +ED + R RH SL+QDY +L +T +MR +LQA ++++ TL AEV
Sbjct: 1 MNPTHGDFTPLNSNHFEDPKVRFRHHSLMQDYGELHMETEAMRKRLQAVRERKATLMAEV 60
Query: 61 SFLRKRYKYLLKNPSPKLQPKQDISQPRKLKIQANLIPKGQKYNRKESMQPPVAPHWNSN 120
FLR+RY++L +QD QP+++K K ++ N + ++ V+P
Sbjct: 61 RFLRRRYRHL----------RQD--QPQEIK-------KVRRSNGGKKIRVEVSP----- 96
Query: 121 GRISNGAEINTLQKKAPMFDLNQNARSLSRKDPSFLSSAPPLDLNHKDMSHSMKEPAKKS 180
SN +E T P DLNH + +H + + K
Sbjct: 97 ---SNKSEAETKHVSLP-------------------------DLNHSEKAHDETKTSPKR 128
Query: 181 ITPFFDLNQIAREEEELLVT-----EPVRIEEPKRITQRDAS--EEQLNDIMLSVCRNDG 233
P FDLNQI+ EEE+ E R+EE + S E Q D+ S CRN G
Sbjct: 129 RVPLFDLNQISGEEEQETEAVDNNQENTRVEESNSCKRLMISSIEMQQKDVKPSSCRNGG 188
Query: 234 SGSSRTSVKRKISWQDQV-ALRV 255
+GS+ KRKISWQD V ALRV
Sbjct: 189 NGSN----KRKISWQDPVAALRV 207
>AT4G30630.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G57910.1); Has 33 Blast hits to 33 proteins in
10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr4:14951048-14952159 FORWARD
LENGTH=237
Length = 237
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 16/216 (7%)
Query: 43 RMKLQAAKQKRLTLSAEVSFLRKRYKYLLKNPSPKLQPKQ-DISQPRKLKIQANLIPKGQ 101
R +L+ KQKRLTL +EV FLR+RY++L ++ + + P+ +S+ L++ P G+
Sbjct: 35 RKRLEMIKQKRLTLKSEVRFLRRRYEHLKQDQTLETSPEMLRLSESGGLEVPRK--PSGE 92
Query: 102 KYNRKESMQPPVAPHWNSNGRISNGAEINTLQKKAPMFDLNQN-ARSLSRKDPSFLSSAP 160
+ +K+S P ++ + + E L DL++ RS +F S P
Sbjct: 93 R--KKQSGVRASVPCFDLKLKNTICNEKEALANNVASCDLDKKRKRSRGSDVLTFPVSLP 150
Query: 161 PLDLNHKDMSHSMKEPAKKSITPFFDLNQIAREEEELLVTEPVRIEEPKRITQRDASEEQ 220
DLN + + + P FDLNQI+REEEE V + E + D
Sbjct: 151 --DLNGEGNTSGTDK------VPGFDLNQISREEEEPEVNGEHMVAEAMKNAMLDNRISD 202
Query: 221 LN-DIMLSVCRNDGSGSSRTSVKRKISWQDQVALRV 255
L+ + L +C D +VKRK++WQD VAL V
Sbjct: 203 LHVERKLPIC-GDVEKELNRAVKRKVTWQDPVALSV 237