Miyakogusa Predicted Gene

Lj6g3v1077540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1077540.1 tr|B9IMC3|B9IMC3_POPTR Stress-induced hydrophobic
peptide (Fragment) OS=Populus trichocarpa
GN=POPTR,85.19,3e-19,SUBFAMILY NOT NAMED,NULL; HYDROPHOBIC PROTEIN
RCI2 (LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6,CUFF.58928.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28088.1 | Symbols:  | Low temperature and salt responsive pr...   129   3e-31
AT4G30660.2 | Symbols:  | Low temperature and salt responsive pr...   119   3e-28
AT4G30660.1 | Symbols:  | Low temperature and salt responsive pr...   119   3e-28
AT2G24040.1 | Symbols:  | Low temperature and salt responsive pr...   117   1e-27
AT4G30650.1 | Symbols:  | Low temperature and salt responsive pr...    91   2e-19
AT2G38905.1 | Symbols:  | Low temperature and salt responsive pr...    68   1e-12
AT3G05880.1 | Symbols: RCI2A | Low temperature and salt responsi...    63   5e-11
AT3G05890.1 | Symbols: RCI2B | Low temperature and salt responsi...    60   4e-10
AT1G57550.1 | Symbols:  | Low temperature and salt responsive pr...    51   2e-07

>AT4G28088.1 | Symbols:  | Low temperature and salt responsive
           protein family | chr4:13961244-13961560 REVERSE
           LENGTH=77
          Length = 77

 Score =  129 bits (324), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 69/74 (93%)

Query: 41  MPNRCEICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIVYVDQ 100
           M N CEICCEIMIA+L+PP+GVC RHGCC+ EF+ICL+LT+LGY+PGIIYALYAIVYVD+
Sbjct: 1   MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 101 DQYFDEYRRPLYAA 114
           DQ+FDEYRRPL+ A
Sbjct: 61  DQFFDEYRRPLFYA 74


>AT4G30660.2 | Symbols:  | Low temperature and salt responsive
           protein family | chr4:14955470-14955944 FORWARD
           LENGTH=74
          Length = 74

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 68/74 (91%)

Query: 41  MPNRCEICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIVYVDQ 100
           MP+ CEI CEI+IA+LLPP+GVCFR GCC+VEF+ICL+LTILGY+PGIIYA+Y IV+  +
Sbjct: 1   MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 101 DQYFDEYRRPLYAA 114
           ++YFDEYRRP+Y+A
Sbjct: 61  EEYFDEYRRPIYSA 74


>AT4G30660.1 | Symbols:  | Low temperature and salt responsive
           protein family | chr4:14955470-14955944 FORWARD
           LENGTH=74
          Length = 74

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 68/74 (91%)

Query: 41  MPNRCEICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIVYVDQ 100
           MP+ CEI CEI+IA+LLPP+GVCFR GCC+VEF+ICL+LTILGY+PGIIYA+Y IV+  +
Sbjct: 1   MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 101 DQYFDEYRRPLYAA 114
           ++YFDEYRRP+Y+A
Sbjct: 61  EEYFDEYRRPIYSA 74


>AT2G24040.1 | Symbols:  | Low temperature and salt responsive
           protein family | chr2:10224028-10224531 FORWARD
           LENGTH=75
          Length = 75

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 64/72 (88%)

Query: 41  MPNRCEICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIVYVDQ 100
           M + CE+CCEI IA+LLPPVGVC RHGCC+VEF ICL+LT LGY+PGIIYA+YAI ++ +
Sbjct: 1   MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 101 DQYFDEYRRPLY 112
           D+YFDEYRRP+Y
Sbjct: 61  DEYFDEYRRPIY 72


>AT4G30650.1 | Symbols:  | Low temperature and salt responsive
           protein family | chr4:14954403-14954698 FORWARD
           LENGTH=73
          Length = 73

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 41  MPNRCEICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIVYVDQ 100
           M +  E+ CEI+IA+LLPP+GVC + GCC+VEF+ICL+LTILGYIPGIIYALY IV+ ++
Sbjct: 1   MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 101 DQYFDEYRRPLYAA 114
           +    E   PL +A
Sbjct: 61  EGS-TELGAPLNSA 73


>AT2G38905.1 | Symbols:  | Low temperature and salt responsive
          protein family | chr2:16244218-16244472 REVERSE
          LENGTH=54
          Length = 54

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 1/51 (1%)

Query: 46 EICCEIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIV 96
          E   EI++A+LLPPVGV  R+GC  VEF ICLLLTILGYIPGIIYA+Y +V
Sbjct: 4  ETFLEIILAILLPPVGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 53


>AT3G05880.1 | Symbols: RCI2A | Low temperature and salt
          responsive protein family | chr3:1756195-1756494
          REVERSE LENGTH=54
          Length = 54

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)

Query: 50 EIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAI 95
          +I+IA+LLPP+GV  R GC  VEF ICL+LT+LGYIPGIIYA+Y +
Sbjct: 8  DIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52


>AT3G05890.1 | Symbols: RCI2B | Low temperature and salt
          responsive protein family | chr3:1758179-1758452
          REVERSE LENGTH=54
          Length = 54

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 38/46 (82%), Gaps = 1/46 (2%)

Query: 50 EIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAI 95
          EI++A++LPP+GV  + GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct: 8  EIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52


>AT1G57550.1 | Symbols:  | Low temperature and salt responsive
          protein family | chr1:21312541-21312809 REVERSE
          LENGTH=52
          Length = 52

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 50 EIMIAVLLPPVGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAI 95
          E++ A+ +PPVGV  R+G   +EF +CLLLT+  +IPG+IYA+Y +
Sbjct: 6  EVLCAIFIPPVGVFLRYGL-GLEFWVCLLLTLFAFIPGLIYAIYVL 50