Miyakogusa Predicted Gene
- Lj6g3v1065690.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1065690.1 tr|A9XI05|A9XI05_NICAL Class S F-box protein
OS=Nicotiana alata GN=DD6 PE=2 SV=1,29.9,6e-18,F_box_assoc_1: F-box
protein interaction domain,F-box associated interaction domain;
seg,NULL,gene.g65563.t1.1
(408 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 61 1e-09
AT3G07870.1 | Symbols: | F-box and associated interaction domai... 56 4e-08
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 55 1e-07
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 55 1e-07
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 36/199 (18%)
Query: 80 NPITGEFIRLPQATRVDNTDGVRHKEVYCGFGFQPKTNEYKVVRILKRHLVRFQENKECM 139
NP TG+ RLP+ R + + R GFGF T++YK+V+++ +++ +
Sbjct: 186 NPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLV-------ATSEDIL 238
Query: 140 AVEMHTLGTSTWK---NVDVDPRDFKWLEFPAVFKGLGFPTCVSGALHWI----SFYYRT 192
+++L +W+ N++ + D + G+ F +GA+HW+ R
Sbjct: 239 DASVYSLKADSWRRICNLNYEHNDGSYT------SGVHF----NGAIHWVFTESRHNQRV 288
Query: 193 ILCFDFEGERFQSFPSPPHLFENRKDTRHITMGELRGSLYICDXXXXXXXXVGTPFTMGT 252
++ FD + E F+ P P + + +G L G L + + +
Sbjct: 289 VVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDI-------- 340
Query: 253 PFTMWIMMKYGFGESWTKV 271
W+M +YG +SW+++
Sbjct: 341 ----WVMSEYGEAKSWSRI 355
>AT3G07870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:2510871-2512124
FORWARD LENGTH=417
Length = 417
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 119/302 (39%), Gaps = 73/302 (24%)
Query: 74 DYFVVCNPITGEFIRLPQATRVDNTDGVRHKEVYCGFGFQPKTNEYKVVRIL-------- 125
D + NP T + LP+ + + +E+ GFGF T EYKV++I+
Sbjct: 136 DSLYLYNPFTTNSLELPECS-----NKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSN 190
Query: 126 ------KRHLVRFQENKECMAVEMHTLGTST------WKNVDVDPRDFKWLEFPAVFKGL 173
R +++++++ V++ TL + T W+++ P F A+
Sbjct: 191 NNGIYRGRGRIQYKQSE----VQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEAL---- 242
Query: 174 GFPTCVSGALHWISFYYRTI-----LCFDFEGERFQSFPSPPHLFENRKDTRHITMGELR 228
V+G LH+++ R + + FD E E F+ P P NR + R + L+
Sbjct: 243 -----VNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVN---LK 294
Query: 229 GSLYICDXXXXXXXXVGTPFTMGTPFTMWIMMKYGFGESWTKVFSID---PVG------R 279
G L + +W+M YG ESW K +SI P G R
Sbjct: 295 GCL------------CAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDR 342
Query: 280 YRW-----PCGGLCWPVQQFKNGAAMLMYHSDNCFIYHEPEKHRFKLFKVRGTQSSFEVI 334
W G + + +NG +L Y S + ++P+ +FK G + F +
Sbjct: 343 PMWIWKNAENGKVVRVLCLLENGEILLEYKS-RVLVAYDPKLGKFKDLLFHGLPNWFHTV 401
Query: 335 PH 336
H
Sbjct: 402 VH 403
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 116/275 (42%), Gaps = 39/275 (14%)
Query: 76 FVVCNPITGEFIRLPQATRVDNTDGVRHKE-VYCGFGFQPKTNEYKVVRILKRHLVRFQE 134
V NP T + RLP ++ +D DG + V+ G G+ +++YKVVR +V+F+
Sbjct: 108 LAVFNPSTRQIHRLPPSS-IDLPDGSSTRGYVFYGLGYDSVSDDYKVVR-----MVQFKI 161
Query: 135 NKE----C---MAVEMHTLGTSTWKNVDVDPRDFKWLEF--PAVFKGLGFPTCVSGALHW 185
+ E C V++ +L ++WK ++ + L + + G+ +LHW
Sbjct: 162 DSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHW 221
Query: 186 IS------FYYRTILCFDFEGERFQSFPSPPHLFENRKDTRHITMGELRGSL-YICDXXX 238
+ + I+ FD E F+ P + D + + +G L G L +C+
Sbjct: 222 VLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQ-MDIGVLDGCLCLMCNYDQ 280
Query: 239 XXXXXVGTPFTMGTPFTMWIMMKYGFGESWTKVFSIDPVGRYRWPCGGLCWPVQQFKNGA 298
+ +W+M +Y +SWTKVF++ + P+ K+
Sbjct: 281 -------------SYVDVWMMKEYNVRDSWTKVFTVQKPKSVK--SFSYMRPLVYSKDKK 325
Query: 299 AMLMYHSDNCFIYHEPEKHRFKLFKVRGTQSSFEV 333
+L+ ++ ++ + E + +++ SS+
Sbjct: 326 KVLLELNNTKLVWFDLESKKMSTLRIKDCPSSYSA 360
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 116/275 (42%), Gaps = 39/275 (14%)
Query: 76 FVVCNPITGEFIRLPQATRVDNTDGVRHKE-VYCGFGFQPKTNEYKVVRILKRHLVRFQE 134
V NP T + RLP ++ +D DG + V+ G G+ +++YKVVR +V+F+
Sbjct: 108 LAVFNPSTRQIHRLPPSS-IDLPDGSSTRGYVFYGLGYDSVSDDYKVVR-----MVQFKI 161
Query: 135 NKE----C---MAVEMHTLGTSTWKNVDVDPRDFKWLEF--PAVFKGLGFPTCVSGALHW 185
+ E C V++ +L ++WK ++ + L + + G+ +LHW
Sbjct: 162 DSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHW 221
Query: 186 IS------FYYRTILCFDFEGERFQSFPSPPHLFENRKDTRHITMGELRGSL-YICDXXX 238
+ + I+ FD E F+ P + D + + +G L G L +C+
Sbjct: 222 VLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQ-MDIGVLDGCLCLMCNYDQ 280
Query: 239 XXXXXVGTPFTMGTPFTMWIMMKYGFGESWTKVFSIDPVGRYRWPCGGLCWPVQQFKNGA 298
+ +W+M +Y +SWTKVF++ + P+ K+
Sbjct: 281 -------------SYVDVWMMKEYNVRDSWTKVFTVQKPKSVK--SFSYMRPLVYSKDKK 325
Query: 299 AMLMYHSDNCFIYHEPEKHRFKLFKVRGTQSSFEV 333
+L+ ++ ++ + E + +++ SS+
Sbjct: 326 KVLLELNNTKLVWFDLESKKMSTLRIKDCPSSYSA 360