Miyakogusa Predicted Gene
- Lj6g3v1052260.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1052260.1 Non Chatacterized Hit- tr|B9S9Z2|B9S9Z2_RICCO
Glycine-rich RNA-binding protein, putative OS=Ricinus
,55.42,2e-19,RRM,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
rec,CUFF.58840.1
(136 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 147 3e-36
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 100 3e-22
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 100 3e-22
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 87 3e-18
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 87 3e-18
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 87 3e-18
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 87 4e-18
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 86 6e-18
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 86 6e-18
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 86 6e-18
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 86 6e-18
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 86 9e-18
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 7e-17
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 81 2e-16
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 4e-16
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 80 4e-16
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 80 5e-16
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 79 9e-16
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 78 2e-15
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 78 2e-15
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 78 2e-15
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 78 2e-15
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 78 2e-15
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 6e-15
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 75 1e-14
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 74 3e-14
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 74 3e-14
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 1e-13
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 8e-13
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 8e-13
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 68 2e-12
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 68 2e-12
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 68 2e-12
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 67 3e-12
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 3e-12
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 67 3e-12
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 5e-12
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 6e-12
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 6e-12
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 7e-12
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 7e-12
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 9e-12
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-11
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-11
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 65 1e-11
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 2e-11
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 65 2e-11
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 65 2e-11
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-11
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-11
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-11
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-11
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-11
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 4e-11
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 4e-11
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 5e-11
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 5e-11
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 7e-11
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-11
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-11
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-11
AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-11
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 62 9e-11
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-11
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-11
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-10
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-10
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 1e-10
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 2e-10
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-10
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-10
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-10
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 61 2e-10
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 61 3e-10
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-10
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-10
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 60 4e-10
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 5e-10
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 60 5e-10
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 60 6e-10
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 60 6e-10
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 60 6e-10
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 8e-10
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 8e-10
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 8e-10
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 59 9e-10
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 59 9e-10
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-09
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-09
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-09
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-09
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-09
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-09
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-09
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-09
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-09
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 58 2e-09
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-09
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-09
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-09
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-09
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-09
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 57 3e-09
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 57 4e-09
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 57 4e-09
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-09
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-09
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-09
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-09
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-09
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-09
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 56 6e-09
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-09
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-09
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-09
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-09
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-09
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-09
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-09
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 56 9e-09
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-08
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 55 1e-08
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 55 1e-08
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 55 1e-08
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 55 1e-08
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 55 2e-08
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-08
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 55 2e-08
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 55 2e-08
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 55 2e-08
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 54 2e-08
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 54 3e-08
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 54 3e-08
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 54 3e-08
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa... 54 4e-08
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 53 5e-08
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 53 6e-08
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:567... 53 6e-08
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 53 7e-08
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 7e-08
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 53 8e-08
AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 52 9e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 52 1e-07
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT5G55670.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 52 1e-07
AT5G55670.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-07
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 52 2e-07
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 52 2e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 52 2e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 52 2e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 52 2e-07
AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387... 51 2e-07
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 | chr3:2007387... 51 2e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 51 2e-07
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 51 3e-07
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 3e-07
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 3e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 51 3e-07
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 4e-07
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 50 5e-07
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 6e-07
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 6e-07
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 7e-07
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact... 49 8e-07
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 49 9e-07
AT1G13190.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 1e-06
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 48 2e-06
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 48 2e-06
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 48 2e-06
AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing fact... 48 2e-06
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 48 2e-06
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 47 3e-06
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 47 3e-06
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 47 3e-06
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 47 4e-06
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 47 4e-06
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 4e-06
AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicin... 47 4e-06
AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs) fa... 46 6e-06
AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 8e-06
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 147 bits (370), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 90/116 (77%), Gaps = 4/116 (3%)
Query: 12 TISAKFNVPPRFYCXXXXXXXXXXXNKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYD 71
+IS+ F+ P+F C +KLF+GGLSWSVDE+SL+DAFSSFG+V EVRI YD
Sbjct: 20 SISSSFHFLPQF-CTSSSASPS---SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYD 75
Query: 72 KDSGRSRGFGFVIFSAEDDAKSAKDSMNGKALLGRPLRISFALEKARGVPIVVPRF 127
K SGRSRGFGFV F+ E DA SAKD+M+GK LLGRPLRISFALE+ RG P+VVPR
Sbjct: 76 KGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRL 131
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+KLFVGGLSW D+ SL+ AF+SFG+VTE ++ D+++GRSRGFGFV FS ED A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 97 SMNGKALLGRPLRISFALEKA 117
M+GK L GR +R++ A E++
Sbjct: 95 EMDGKELNGRQIRVNLATERS 115
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+KLFVGGLSW D+ SL+ AF+SFG+VTE ++ D+++GRSRGFGFV FS ED A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 97 SMNGKALLGRPLRISFALEKA 117
M+GK L GR +R++ A E++
Sbjct: 95 EMDGKELNGRQIRVNLATERS 115
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 8 FLATTISAKFNVPPRFYCXXXXXXXXXXXNKLFVGGLSWSVDEKSLQDAFSSFGQVTEVR 67
L IS+ NVP KLF+GGLSW D+ SL+DAF+ FG V + +
Sbjct: 10 LLRQNISSNGNVP----VTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK 65
Query: 68 IVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNGKALLGRPLRISFALEK 116
++ D+++GRSRGFGFV F+ E A +A M+GK L GR +R++ A ++
Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 8 FLATTISAKFNVPPRFYCXXXXXXXXXXXNKLFVGGLSWSVDEKSLQDAFSSFGQVTEVR 67
L IS+ NVP KLF+GGLSW D+ SL+DAF+ FG V + +
Sbjct: 10 LLRQNISSNGNVP----VTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK 65
Query: 68 IVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNGKALLGRPLRISFALEK 116
++ D+++GRSRGFGFV F+ E A +A M+GK L GR +R++ A ++
Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 8 FLATTISAKFNVPPRFYCXXXXXXXXXXXNKLFVGGLSWSVDEKSLQDAFSSFGQVTEVR 67
L IS+ NVP KLF+GGLSW D+ SL+DAF+ FG V + +
Sbjct: 10 LLRQNISSNGNVP----VTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK 65
Query: 68 IVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNGKALLGRPLRISFALEK 116
++ D+++GRSRGFGFV F+ E A +A M+GK L GR +R++ A ++
Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 8 FLATTISAKFNVPPRFYCXXXXXXXXXXXNKLFVGGLSWSVDEKSLQDAFSSFGQVTEVR 67
L IS+ NVP KLF+GGLSW D+ SL+DAF+ FG V + +
Sbjct: 10 LLRQNISSNGNVP----VTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK 65
Query: 68 IVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNGKALLGRPLRISFALEK 116
++ D+++GRSRGFGFV F+ E A +A M+GK L GR +R++ A ++
Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N+L+VG LSW VD+ +L++ F+ G+V E R++YD+DSGRS+GFGFV S+ + + A +
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 97 SMNGKALLGRPLRISFA 113
S+NG L GR +R+S A
Sbjct: 338 SLNGADLDGRQIRVSEA 354
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG LS++VD L F S G V V ++YDK +GRSRGFGFV S + ++A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 98 MNG 100
NG
Sbjct: 160 FNG 162
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N+L+VG LSW VD+ +L++ F+ G+V E R++YD+DSGRS+GFGFV S+ + + A +
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 97 SMNGKALLGRPLRISFA 113
S+NG L GR +R+S A
Sbjct: 317 SLNGADLDGRQIRVSEA 333
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG LS++VD L F S G V V ++YDK +GRSRGFGFV S + ++A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 98 MNGKALLGRPLRIS 111
NG GRPLR++
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N+L+VG LSW VD+ +L++ F+ G+V E R++YD+DSGRS+GFGFV S+ + + A +
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 97 SMNGKALLGRPLRISFA 113
S+NG L GR +R+S A
Sbjct: 317 SLNGADLDGRQIRVSEA 333
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG LS++VD L F S G V V ++YDK +GRSRGFGFV S + ++A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 98 MNGKALLGRPLRIS 111
NG GRPLR++
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 57/77 (74%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N+L+VG LSW VD+ +L++ F+ G+V E R++YD+DSGRS+GFGFV S+ + + A +
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 97 SMNGKALLGRPLRISFA 113
S+NG L GR +R+S A
Sbjct: 317 SLNGADLDGRQIRVSEA 333
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG LS++VD L F S G V V ++YDK +GRSRGFGFV S + ++A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 98 MNGKALLGRPLRIS 111
NG GRPLR++
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 65/80 (81%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+KLF+GG+++S+DE SL++AF+ +G+V + R++ D+++GRSRGFGFV F++ + A SA
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 97 SMNGKALLGRPLRISFALEK 116
+++G+ L GR +++++A ++
Sbjct: 100 ALDGRDLHGRVVKVNYANDR 119
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 56/77 (72%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N+++VG LSW VD+ +L+ FS G+V E R++YD+DSGRS+GFGFV + + + ++A
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 97 SMNGKALLGRPLRISFA 113
S++G L GR +R+S A
Sbjct: 264 SLDGADLDGRQIRVSEA 280
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG L ++VD L F S G V V ++YDK +GRSRGFGFV S+ + ++A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 98 MNGKALLGRPLRIS 111
NG L GRPLR++
Sbjct: 152 FNGYELDGRPLRVN 165
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 55/76 (72%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL++GGLS DE SL+DAFSSF VTE R++ +K +GRSRG+GFV F +ED A SA +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 98 MNGKALLGRPLRISFA 113
MNG+ L G + ++ A
Sbjct: 92 MNGQELNGFNISVNVA 107
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+KLFVG LSW+V +SL AF G V R+V+D D+GRSRG+GFV +S++ + ++A +
Sbjct: 177 HKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALE 236
Query: 97 SMNGKALLGRPLRISFA 113
S++G L GR +R++ A
Sbjct: 237 SLDGFELEGRAIRVNLA 253
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL+ G L ++VD +L F V ++Y++D+G+SRGF FV S +D D+
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 98 MNGKALLGRPLRISFA 113
++G LGR L+++FA
Sbjct: 146 LDGTEYLGRALKVNFA 161
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVGG+S+S DE L++AFS +G+V + +I+ D+++GRSRGF FV F++ ++A +A
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 98 MNGKALLGRPLRISFALE 115
++G+ L GR +R+++A E
Sbjct: 94 LDGQDLHGRRIRVNYATE 111
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+++VG L W VD L+ FS G+V E R+VYD+++GRSRGFGFV S D+ A +
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 98 MNGKALLGRPLRISFALEK 116
++G+ L GR +R++ A E+
Sbjct: 305 LDGQNLEGRAIRVNVAEER 323
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG L++ V+ ++L F G V ++Y++++ +SRGFGFV S+ D+A++A +
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 98 MNGKALLGRPLRISFA 113
N L GR L ++ A
Sbjct: 211 FNRYDLNGRLLTVNKA 226
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ +++ LQ FS FG V + +I+ D++SGRSRGFGFV F E + A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 98 MNGKALLGRPLRISFALEKARG 119
MNGK L GR + ++ A + G
Sbjct: 67 MNGKELDGRVITVNEAQSRGSG 88
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ +++ LQ FS FG V + +I+ D++SGRSRGFGFV F E + A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 98 MNGKALLGRPLRISFA 113
MNGK L GR + ++ A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ +++ LQ FS FG V + +I+ D++SGRSRGFGFV F E + A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 98 MNGKALLGRPLRISFA 113
MNGK L GR + ++ A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 54/76 (71%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ D+++L+ AF+ +G V + +I+ D+++GRSRGFGFV F E K A +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 98 MNGKALLGRPLRISFA 113
MNG+ L GR + ++ A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 54/76 (71%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ D+++L+ AF+ +G V + +I+ D+++GRSRGFGFV F E K A +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 98 MNGKALLGRPLRISFA 113
MNG+ L GR + ++ A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 54/80 (67%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+KLF+GGLS+ E+ L +AFS GQV E +IV D+ S RS+GFGFV F++ D+A+ A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 97 SMNGKALLGRPLRISFALEK 116
NG+ L GR + + +A K
Sbjct: 94 EFNGQQLNGRTIFVDYAKAK 113
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFV GLS + LQDAF+SFGQ+ + R++ D+DSGRS+GFGFV ++ +DA+ AK
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 98 MNGKALLG 105
MN K L G
Sbjct: 95 MNAKFLDG 102
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+++VG L W VD L+ FS G+V + R+V D+++GRSRGFGFV S E++ A +
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 98 MNGKALLGRPLRISFALEKAR 118
++G+ L GR ++++ A E+ R
Sbjct: 268 LDGQNLEGRAIKVNVAEERTR 288
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG L + VD ++L F G V ++Y++D+ +SRGFGFV S ++A+ A +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 98 MNGKALLGRPLRISFA 113
N + GR L ++ A
Sbjct: 174 FNSFEVNGRRLTVNRA 189
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 73.9 bits (180), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 55/79 (69%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG LS V + +L D+FS+F ++ R+++D+ +GRSRGFGFV F + DA++A + M
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 99 NGKALLGRPLRISFALEKA 117
NGK + R +R ++A + A
Sbjct: 210 NGKWVSSRQIRCNWATKGA 228
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K++ G L W++ + L+DAF V +++Y++++GRSRGFGF+ F + ++ +SA
Sbjct: 219 HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVP 125
+MNG + GR LR++ A E+ + P V P
Sbjct: 279 TMNGVEVEGRALRLNLASEREK--PTVSP 305
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+L+VG L +++ L F G V +V+IVYDK + RSRGFGFV + ++AK A
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 98 MNGKALLGRPLRISF 112
N + GR ++++F
Sbjct: 177 FNSSQIGGRTVKVNF 191
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 72.0 bits (175), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG LS V + +L +FS F ++ R+++D+ +GRSRGFGFV F + DA++A + M
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 99 NGKALLGRPLRISFALEKA 117
NGK L R +R ++A + A
Sbjct: 206 NGKWLSSRQIRCNWATKGA 224
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGLSW V E+ L+ F +G++TE +I+ +D+GR RGFGF+ F+ A A
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 97 SMNGKALLGRPLRISFALEKARGVPI 122
M+G+ L + + ++ A K G +
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDV 97
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGLSW V E+ L+ F +G++TE +I+ +D+GR RGFGF+ F+ A A
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 97 SMNGKALLGRPLRISFALEKARGVPI 122
M+G+ L + + ++ A K G +
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDV 97
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 68.2 bits (165), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVT----EVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
+FVG LS V + +L D+FS+F + + R+++D+ +GRSRGFGFV F + DA++A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 95 KDSMNGKALLGRPLRISFALEKA 117
+ MNGK + R +R ++A + A
Sbjct: 210 INEMNGKWVSSRQIRCNWATKGA 232
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N L+VGGL+ V+E L AF FG + +V+ D+ + + R FGFV F +DA +A D
Sbjct: 13 NTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMD 72
Query: 97 SMNGKALLGRPLRISFAL-EKARG 119
+M+G L GR L +++AL EK +G
Sbjct: 73 NMDGAELYGRVLTVNYALPEKIKG 96
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ F+GGL+W+ ++ L+DAF +G + E ++V DK SGRSRGFGF+ F + A +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 98 MNGKALLGRPLRISFA 113
MNG L GR + + A
Sbjct: 68 MNGMDLDGRTITVDKA 83
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+ FVGGL+W+ +++ LQ FS FG V + +I+ D++SGRSRGFGFV F E + A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 98 MN 99
MN
Sbjct: 67 MN 68
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFV LS ++SL+ FS FGQ+ E R++ D ++ R +GFGF+ F +EDDA+ A S
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 98 MNGKALLGRPLRISFA 113
++GK + GR + + A
Sbjct: 68 LDGKIVDGRLIFVEVA 83
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K+FVGGLS S D + L++AF SFG++ + +V D++SG SRGFGFV + + + A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 97 SMNGKALLGR 106
+M K L GR
Sbjct: 96 AMQNKELDGR 105
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+ GLS+ EK+L+ AF FG++ EV+I+ DK S RS+G+ F+ ++ E+ A +A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 98 MNGKALLGRPLRISFALEK 116
MNGK + G + + A K
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+GG+SW DE+ L+D FS++G V E I+ D+ +GR+RGFGF++F+ D S +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA--DPCVSERVI 64
Query: 98 MNGKALLGRPLRISFALEK 116
M+ + GR + A+ +
Sbjct: 65 MDKHIIDGRTVEAKKAVPR 83
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL S+ E+ ++ F FG + +V ++YD ++ R RGFGF+ F ++D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDD 162
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+GG+SW DE+ L+D FS++G V E I+ D+ +GR+RGFGF++F+ D S +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA--DPCVSERVI 64
Query: 98 MNGKALLGRPLRISFALEK 116
M+ + GR + A+ +
Sbjct: 65 MDKHIIDGRTVEAKKAVPR 83
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL S+ E+ ++ F FG + +V ++YD ++ R RGFGF+ F ++D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDD 162
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+GG+SW DE+ L+D FS++G V E I+ D+ +GR+RGFGF++F+ D S +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA--DPCVSERVI 64
Query: 98 MNGKALLGRPLRISFALEK 116
M+ + GR + A+ +
Sbjct: 65 MDKHIIDGRTVEAKKAVPR 83
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL S+ E+ ++ F FG + +V ++YD ++ R RGFGF+ F ++D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDD 162
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLF+GG+SW DE+ L+D FS++G V E I+ D+ +GR+RGFGF++F+ D S +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA--DPCVSERVI 64
Query: 98 MNGKALLGRPLRISFALEK 116
M+ + GR + A+ +
Sbjct: 65 MDKHIIDGRTVEAKKAVPR 83
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL S+ E+ ++ F FG + +V ++YD ++ R RGFGF+ F ++D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDD 162
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 40 FVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMN 99
FV G S SV E L+ FS FGQVT V+I+ ++ + +S G+G+V F++++DA+SA ++MN
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 100 GKALLGRPLRISFA 113
GK GR + + F
Sbjct: 140 GKFFDGRFILVKFG 153
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW +E+ L++ FSSFG+V E I+ D+ +GR+RGFGFV+F+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA 55
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL SV E + F FG T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW +E+ L++ FSSFG+V E I+ D+ +GR+RGFGFV+F+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA 55
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL SV E + F FG T+V ++YD ++ R RGFGF+ + +E+
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE 160
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQV-TEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
LF+G L VDEK L D FS+FG + + +I+ D D+G SRGFGF+ + + + + +A +S
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 98 MNGKALLGRPLRISFALEK 116
M G+ L R + +S+A +K
Sbjct: 174 MTGQYLSNRQITVSYAYKK 192
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++VGGL + E+ L + F G V V + D+ + + +GF+ + +E+DA A +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNIGNLN 134
N L G+P+R++ A + + + + F IGNL+
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLF--IGNLD 120
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA--- 94
KLF+GG+SW E L+D F SFG+V E I+ D+ +GR+RGFGFV+F+ + A+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 95 KDSMNGKALL 104
K ++GK L+
Sbjct: 67 KHIIDGKILV 76
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ SV E + F+ FG +T+V ++YD + R RGFGF+ + +E+
Sbjct: 129 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 180
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG LS V + L FS + ++ R+++D+ +GRSRGFGFV F + DA++A D +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 99 NGKALLGRPLRISFALEKA 117
GK L R +R ++A + A
Sbjct: 201 TGKWLGSRQIRCNWATKGA 219
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG LS V + L FS + ++ R+++D+ +GRSRGFGFV F + DA++A D +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 99 NGKALLGRPLRISFALEKA 117
GK L R +R ++A + A
Sbjct: 201 TGKWLGSRQIRCNWATKGA 219
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 63.9 bits (154), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++F+GGL V E+ L+D G++ EVR++ D+DSG S+G+ FV F +D A+ A +
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 97 SMNGKALLGRPLRISFALEKAR 118
++ K G+ +R S + K R
Sbjct: 156 ELHSKEFKGKTIRCSLSETKNR 177
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 63.9 bits (154), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++F+GGL V E+ L+D G++ EVR++ D+DSG S+G+ FV F +D A+ A +
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 97 SMNGKALLGRPLRISFALEKAR 118
++ K G+ +R S + K R
Sbjct: 176 ELHSKEFKGKTIRCSLSETKNR 197
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 63.9 bits (154), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++F+GGL V E+ L+D G++ EVR++ D+DSG S+G+ FV F +D A+ A +
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 97 SMNGKALLGRPLRISFALEKAR 118
++ K G+ +R S + K R
Sbjct: 176 ELHSKEFKGKTIRCSLSETKNR 197
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAK 92
KLF+GG+SW E L+D F SFG+V E I+ D+ +GR+RGFGFV+F+ + A+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ SV E + F+ FG +T+V ++YD + R RGFGF+ + +E+
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAK 92
KLF+GG+SW E L+D F SFG+V E I+ D+ +GR+RGFGFV+F+ + A+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ SV E + F+ FG +T+V ++YD + R RGFGF+ + +E+
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLFVGG+SW DE L++ F+++G+V++ ++ DK +GR RGFGFVIFS
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFS 55
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVGGL ++ ++ + F +G VT+V I+YD+ + R RGFGFV F +ED A DS
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSED----AVDS 166
Query: 98 MNGKA---LLGRPLRISFALEK 116
+ K L G+ + + AL K
Sbjct: 167 VLHKTFHDLSGKQVEVKRALPK 188
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVGGL+W +++ F FG++ E ++ DK++GRS+G+GFV F + A A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 98 MN 99
MN
Sbjct: 83 MN 84
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W +++++ F FG++ E ++ DK SGRS+G+GFV F + A+SA
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W +++++ F FG++ E ++ DK SGRS+G+GFV F + A+SA
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W +++++ F FG++ E ++ DK SGRS+G+GFV F + A+SA
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW DE L++ FS+FG+V +V ++ +K +GR RGFGFV FS
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFS 55
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW DE+ LQ+ F +G + E I+ D+ +GR+RGFGF++F+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 64
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL S+ E ++ F FG + +V ++YD ++ R RGFGF+ F +E+
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLF+GG+SW DE+ LQ+ F +G + E I+ D+ +GR+RGFGF++F+
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 61
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL S+ E ++ F FG + +V ++YD ++ R RGFGF+ F +E+
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 171
>AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357570-6359024 REVERSE LENGTH=126
Length = 126
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 46/62 (74%)
Query: 40 FVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMN 99
FV G S SV E L+ FS FGQVT V+I+ ++ + +S G+G+V F++++DA+SA ++MN
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
Query: 100 GK 101
GK
Sbjct: 121 GK 122
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L S+D K+L + FSSFG + ++ D +GRS+G+GFV F E+ A++A D +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 99 NGKALLGRPLRISFAL---EKARGVPIVVPRFSNI 130
NG + + + + + E+AR PRF+N+
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L SVD++ L++ FS +G VT +++ + G SRGFGFV +S ++A A M
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEM 392
Query: 99 NGKALLGRPLRISFALEK 116
NGK + +PL I+ A K
Sbjct: 393 NGKMIGRKPLYIALAQRK 410
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FV GL W ++L+ AF +G++TE +V DKD+GR++GFGFV+F A++A +
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 99 NGK-------ALLGRPLRISFALEKARGVPIVVPRFSNIGN 132
+ L RP E+ + V V S+ GN
Sbjct: 225 EKRMYNRTVSCLPARPFNSGKPREQQQPVESVKIDLSHTGN 265
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W + SL++ F FG + E ++ DK SGRS+G+GFV F + A+ A
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W + SL++ F FG + E ++ DK SGRS+G+GFV F + A+ A
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFV GL +S E+ L + FS FG ++EV +V DKD+ RG FV++ + AK A D
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 98 MNGKALLGRPLRI 110
++ GR L I
Sbjct: 288 LDKLPFQGRTLHI 300
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSS--FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
+KL+V L+W L++ F++ F V+ R+V+ GRS G+GFV F+ ++A++A
Sbjct: 194 HKLYVSNLAWKARSTHLRELFTAADFNPVS-ARVVFADPEGRSSGYGFVSFATREEAENA 252
Query: 95 KDSMNGKALLGRPLRISFALEKA 117
+NGK ++GRP+ + F+L A
Sbjct: 253 ITKLNGKEIMGRPITLKFSLRSA 275
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFV L WS+ + + F G V V I+ KD G++RGF FV ++ ++A++A D
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 98 MNGKALLGRPLRISFA 113
+ + GR + +SFA
Sbjct: 155 FDTFQVSGRIISVSFA 170
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++L+ F +G++ E ++ DK++GRS+G+GFV F + A+ A
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL V G+ W +D L+D S FG + + ++ D+ +GRSRGFG+V F++ +DAK+A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA--- 60
Query: 98 MNGKALLG-RPLRISFALEK 116
+ G+ LG R L + A K
Sbjct: 61 LKGEHFLGNRILEVKVATPK 80
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL V G+ W +D L+D S FG + + ++ D+ +GRSRGFG+V F++ +DAK+A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA--- 60
Query: 98 MNGKALLG-RPLRISFALEK 116
+ G+ LG R L + A K
Sbjct: 61 LKGEHFLGNRILEVKVATPK 80
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 40 FVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
FV GL DEK L D FS FG V + +I+YD+D+G+SR FGFV F E KS D++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEE---KSMTDAI 65
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 61.2 bits (147), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
+FV G W +++L+ AF S+G++ E +V DKD+GR +G+GFV+F A+ A
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+V L +S+ + FS+FG+V V ++ D+ + +SRG FV++ + +DA A SM
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPR 126
+ K L GR L +S A + R + R
Sbjct: 119 DAKILNGRKLTVSIAADNGRASEFIKKR 146
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV G+S+S E++L AFS +GQV +V ++ DK R +GF +V FS++++A+ A +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 99 NGKALLGR 106
N + + GR
Sbjct: 83 NAQLVDGR 90
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++VG LS + + L++AFS +G V + ++ D+ + RSRGFGFV +S+ +A++A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 97 SMNGKALLGRPLRISFAL 114
M+GK L GR R+S L
Sbjct: 63 GMDGKELNGR--RVSVKL 78
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAK 95
+ +FVG L+ V + L D F + +G V ++V D+ +GRS+G+GFV F+ E++ A
Sbjct: 154 HTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAM 213
Query: 96 DSMNGKALLGRPLRISFALEKARGVPIVVPRFSNIGNLN 134
MNG+ RP+RI A K +P+ + N N
Sbjct: 214 TEMNGQYCSTRPMRIGPAANK-NALPMQPAMYQNTQGAN 251
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
KL+V GLS+ E +L+D F FG + + +V DK + R +GF F+ + E++A A
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 97 SMNGKALLGR 106
M+GK L GR
Sbjct: 137 GMHGKFLDGR 146
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 59.7 bits (143), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV L SVD K+L +AFS G + ++ D G+SRG+GFV F ED AK+A + +
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 99 NGKAL 103
NGK L
Sbjct: 195 NGKVL 199
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+V L +V ++ L++ F+ FG +T +++ D SG S+G GFV FSA +A + M
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNI 130
NGK + G+PL ++ A K + +FS +
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQM 420
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L ++V + L D F+ QV VR+ D + S G+G+V +S DDA+ A +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 99 NGKALLGRPLRISF 112
N L G+ +RI++
Sbjct: 108 NYSYLNGKMIRITY 121
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+V LS S++E L++ F +GQ+ +++ ++GRS+GFGFV FS +++K AK +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 99 NGKALLGRPLRISFALEK 116
NG + G+P+ + A K
Sbjct: 365 NGFLVDGKPIVVRVAERK 382
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++V L +V + L FS +G V+ V ++ D GRSRGFGFV F ++AK A +S+
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSN 129
G L + L + AL+K ++ +FS+
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSD 293
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+V L S+ L+ F FG + ++V +++G+S+GFGFV F E A SA+ ++
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 99 NGKALLGRPL 108
+G + G+ L
Sbjct: 172 HGSMVYGKKL 181
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L S+D K+L + FSSFG + ++ D GRS+G+GFV F E+ A++A D +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 99 NGKALLGRPLRISFAL---EKARGVPIVVPRFSNI 130
NG L + + + + ++AR VP F+N+
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNV 241
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L SV+++ L++ FS +G VT +++ + G SRGFGFV +S ++A A M
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 402
Query: 99 NGKALLGRPLRISFALEK 116
NGK + +PL ++ A K
Sbjct: 403 NGKMIGRKPLYVALAQRK 420
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L SV+E L D F+ V +R+ D + RS G+ +V F+ +DA A +S+
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 99 NGKALLGRPLRISFA 113
N + RP+RI +
Sbjct: 120 NYAPIRDRPIRIMLS 134
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L S+D K+L + FSSFG + ++ D GRS+G+GFV F E+ A++A D +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 99 NGKALLGRPLRISFAL---EKARGVPIVVPRFSNI 130
NG L + + + + ++AR VP F+N+
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNV 241
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++ L SV+++ L++ FS +G VT +++ + G SRGFGFV +S ++A A M
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 402
Query: 99 NGKALLGRPLRISFALEK 116
NGK + +PL ++ A K
Sbjct: 403 NGKMIGRKPLYVALAQRK 420
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L SV+E L D F+ V +R+ D + RS G+ +V F+ +DA A +S+
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 119
Query: 99 NGKALLGRPLRISFA 113
N + RP+RI +
Sbjct: 120 NYAPIRDRPIRIMLS 134
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++ F FG++ E I+ DK++G+S+G+GFV F D A A
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRA 74
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 59.3 bits (142), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++++GG+ E L+ S G+VTEVRI+ +KDSG +G+ FV F ++D A A D
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPR 126
++N G+ ++ S K R VPR
Sbjct: 152 TLNNTDFRGKRIKCSTTQAKHRLFLGNVPR 181
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 59.3 bits (142), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++++GG+ E L+ S G+VTEVRI+ +KDSG +G+ FV F ++D A A D
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPR 126
++N G+ ++ S K R VPR
Sbjct: 152 TLNNTDFRGKRIKCSTTQAKHRLFLGNVPR 181
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 58.9 bits (141), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+ L+V L SV + L++ F+ FG +T +++ D SG SRG GFV FS ++A A
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAIT 385
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPRFSNIGNLN 134
MNGK ++ +PL ++ A K + +FS + +N
Sbjct: 386 EMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVN 423
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L +V + L +AF+ GQV VR+ D + RS G+G+V ++ DA A + +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 99 NGKALLGRPLRISFAL 114
N AL GR +R+ +++
Sbjct: 107 NFMALNGRAIRVMYSV 122
Score = 52.8 bits (125), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L S+D K+L + FS+FG + ++ D SG+S+G+GFV + ++ A+ A D +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 99 NGKAL 103
NG L
Sbjct: 194 NGMLL 198
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++V LS S+ ++ L F FG T I+ D + G+S+GFGFV F DDA A D++
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 99 NGKAL 103
NGK
Sbjct: 285 NGKTF 289
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 58.9 bits (141), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+ L+V L SV + L++ F+ FG +T +++ D SG SRG GFV FS ++A A
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAIT 385
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPRFSNIGNLN 134
MNGK ++ +PL ++ A K + +FS + +N
Sbjct: 386 EMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVN 423
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L +V + L +AF+ GQV VR+ D + RS G+G+V ++ DA A + +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 99 NGKALLGRPLRISFAL 114
N AL GR +R+ +++
Sbjct: 107 NFMALNGRAIRVMYSV 122
Score = 52.8 bits (125), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L S+D K+L + FS+FG + ++ D SG+S+G+GFV + ++ A+ A D +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 99 NGKAL 103
NG L
Sbjct: 194 NGMLL 198
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++V LS S+ ++ L F FG T I+ D + G+S+GFGFV F DDA A D++
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 99 NGKAL 103
NGK
Sbjct: 285 NGKTF 289
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++L+ F +G + E ++ DK++GRS+G+GFV F + A+ A
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++L+ F +G + E ++ DK++GRS+G+GFV F + A+ A
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W SL DAF +G++ + + V DK SG+S+G+GF++F + A++A
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W SL DAF +G++ + + V DK SG+S+G+GF++F + A++A
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++ F FG++ E I+ DK++G+S+G+GFV F D A A
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRA 74
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGG+ +V E L+D F+ +G V E +++ D ++ RSRGFGFVIF +E+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL ++E L++ F +G + E +I+YD +GRSRGFGFV F ED
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTED 209
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFS 86
KLFVGG+SW ++ + F FG+V + I+ D+ +G RGFGFV F+
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFA 115
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGG+ +V E L+D F+ +G V E +++ D ++ RSRGFGFVIF +E+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIF-SAEDDAKSAKD 96
K++VGGL W+ ++ L + F FG++ V +V D+++ RS+G+GFV F AE ++ KD
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 97 SMNGKALLGRPLRISFALEKAR---------GVPIVVPRF 127
+ GR A A+ +P ++PR+
Sbjct: 74 P--NPTIEGRITNCKLAFVGAKVKPNQSQPSNLPQLLPRY 111
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+F+ L S+D K+L D FSSFG + ++ D SG+S+G+GFV ++ E+ A+ A + +
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 99 NGKAL 103
NG L
Sbjct: 185 NGMLL 189
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L ++V + L DAF G V VR+ D + RS G+G+V F+ DA A +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 99 NGKALLGRPLRISFA 113
N L G+P+R+ ++
Sbjct: 98 NYIPLYGKPIRVMYS 112
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+V L S+ ++ L++ FS FG VT +++ D + G S+G GFV F+ ++A A +
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQL 378
Query: 99 NGKALLGRPLRISFALEK 116
+GK + +PL ++ A K
Sbjct: 379 SGKMIESKPLYVAIAQRK 396
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++V L+ S + L++AF +G++T ++ D + G+S+GFGFV F DDA A +S+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 99 NG 100
NG
Sbjct: 276 NG 277
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGG+ SVD+ ++ F FG++ E +I+ D +GRSRGFGFV + +ED
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++FVGGLS V ++ L+ AFS FG + + +I+ ++D+GRSRGFGF+ F+ +
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 97 SMNGKALLGRPLRISFALEK 116
M+G+ R + ++ A K
Sbjct: 67 EMHGRDFGDRVISVNRAEPK 86
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 40/57 (70%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L +AF +G++ + + V+DK SG+S+G+GF+++ + A++A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 40/57 (70%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L +AF +G++ + + V+DK SG+S+G+GF+++ + A++A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 40/57 (70%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L +AF +G++ + + V+DK SG+S+G+GF+++ + A++A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 40/57 (70%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L +AF +G++ + + V+DK SG+S+G+GF+++ + A++A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 40/57 (70%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L +AF +G++ + + V+DK SG+S+G+GF+++ + A++A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNA 197
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LFV L ++ E+ L + FS+FG+++EV +V DK++ RSRG ++++ + A A +
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 98 MNGKALLGRPLRI 110
++ + GR L I
Sbjct: 355 LDNSSFQGRLLHI 367
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+V L SVD L++ FS FG +T +++ + G S+G GFV FS ++A A M
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAMLKM 283
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSN 129
NGK + +P+ +S A K + + +F+N
Sbjct: 284 NGKMVGNKPIYVSLAQCKEQHKLHLQTQFNN 314
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA-K 95
K++VGGL W + L+ F FG + V +V D+++GRS G+GFV F DA+SA +
Sbjct: 52 TKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFR---DAESATR 108
Query: 96 DSMNGKALL-GRPLRISFALEKAR 118
N K ++ GR + + A R
Sbjct: 109 ACQNPKPVIDGREAKCNLAYIGGR 132
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFS-SFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAK 95
+ +FVG L+ V + LQ+ F + V ++V D +GRS+G+GFV F+ E + A
Sbjct: 116 HSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAM 175
Query: 96 DSMNGKALLGRPLRISFALEK 116
MNG RP+RIS A K
Sbjct: 176 AEMNGLYCSTRPMRISAATPK 196
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L + VDE L FS G++ V+++ +K +G+ G+GF+ F + A+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 99 NGKALLGRPL--RISFA 113
NG + G L R+++A
Sbjct: 86 NGTQMPGTELTFRLNWA 102
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFS-SFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAK 95
+ +FVG L+ V + LQ+ F + V ++V D +GRS+G+GFV F+ E + A
Sbjct: 116 HSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAM 175
Query: 96 DSMNGKALLGRPLRISFALEK 116
MNG RP+RIS A K
Sbjct: 176 AEMNGLYCSTRPMRISAATPK 196
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L + VDE L FS G++ V+++ +K +G+ G+GF+ F + A+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 99 NGKALLGRPL--RISFA 113
NG + G L R+++A
Sbjct: 86 NGTQMPGTELTFRLNWA 102
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K+ V L +S E L+ FS+FG++ EV+++ D+ RS+G+ F+ F+++DDA A +
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 97 SMNGKALLGRPLRISFA 113
+M+ + GR + I A
Sbjct: 100 TMDRRMYNGRMIYIDIA 116
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FVGGL+W ++ F FG++ E I+ DK +G+S+G+GFV F D A A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRA 74
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N L+V GLS V E+ L+D F+ G+VT+V +V D + SRGFGF+ + DA
Sbjct: 45 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIR 104
Query: 97 SMNGKALLGRPLRI 110
S++ L GR + +
Sbjct: 105 SLDHSVLQGRVITV 118
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LF LS++++ +++ F G+V +VR ++D G RGFG V F++ ++A+ A +
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE-F 357
Query: 99 NGKALLGRPLRISFALEKA-RGV-PIVVPRFSN 129
+G+ LLGR +R+ A E+ RG P P+ N
Sbjct: 358 HGRPLLGREIRLDIAQERGERGERPAFTPQSGN 390
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV GLS + L+ AF+ FG+V + ++V D+ SG S+GFGFV ++ +D+ M
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 99 NGKALLG 105
+GK L G
Sbjct: 118 DGKFLDG 124
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K++VG L W L++ FS FG + R+++D+ +GR+R F F+ F++ ++ + A
Sbjct: 213 HKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAAL 271
Query: 97 SMNGKALLGRPLRISFALEKA 117
S NG GR + + +EK+
Sbjct: 272 SFNGTQYEGRRIIVREGIEKS 292
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIV-YDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+L+V + S D L D F FG V V +V + +G SRG G+V + + AK A
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 97 SMNGKALLGRPLRISFALEKARGV 120
S++G + GR +R+ ++++ G
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGT 192
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N ++VGGL + + E++++ FS +G V V+IV D+ S R + +GFV FS A A +
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDR-SVRGKCYGFVTFSNRRSADDAIE 65
Query: 97 SMNGKALLGRPLRIS 111
M+GK++ GR +R++
Sbjct: 66 DMDGKSIGGRAVRVN 80
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
++++G + +V + L G V +V+++YDK SGRSR FGF + +DA + +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 98 MNGKALLGRPLRISF 112
+NG + GR ++++
Sbjct: 137 LNGNTVEGREIKVNI 151
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K++VG L+ +V ++ L++ FS G+V ++ + +S GFGFV FS+E+D ++A +
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 98 MNGKALLGRPLRISFA 113
+N L G+ +R++ A
Sbjct: 238 LNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
++++G + +V + L G V +V+++YDK SGRSR FGF + +DA + +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 98 MNGKALLGRPLRISF 112
+NG + GR ++++
Sbjct: 137 LNGNTVEGREIKVNI 151
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K++VG L+ +V ++ L++ FS G+V ++ + +S GFGFV FS+E+D ++A +
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 98 MNGKALLGRPLRISFA 113
+N L G+ +R++ A
Sbjct: 238 LNNSLLEGQKIRVNKA 253
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+K++VG L W L++ FS FG + R+++D+ +GR+R F F+ F++ ++ + A
Sbjct: 212 HKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAAL 270
Query: 97 SMNGKALLGRPLRISFALEKA 117
S NG GR + + +EK+
Sbjct: 271 SFNGTQYEGRRIIVREGIEKS 291
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+L+V + S D L D F FG V V + + +G SRG G+V + + AK A S
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 98 MNGKALLGRPLRISFALEKARGV 120
++G + GR +R+ ++++ G
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGT 191
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 55.8 bits (133), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
+++F+GGL V E+ L+D G++ EVR++ D+DSG S+G+ FV F +D A+ A +
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 97 SMNGK 101
++ K
Sbjct: 176 ELHSK 180
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++V ++ +V E+ L+ FS G +T +++ D + G+S+GFGFV FS ++A A +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 99 NGKALLGRPLRISFALEK 116
+G+ G+PL ++ A +K
Sbjct: 365 HGQMFHGKPLYVAIAQKK 382
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L SV E L DAF+ F +T VR+ D SGRS +G+ F + DA A +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 99 NGKALLGRPLRISFAL 114
N L G+ +R+ +++
Sbjct: 86 NNSLLNGKMIRVMWSV 101
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FV L SV LQD F FG + ++ +D G+SRG+GFV F ED A +A ++
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 99 NGKALLGRPLRI 110
N + + + +
Sbjct: 173 NSTIVADKEIYV 184
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N L+V GLS V E+ L+D F+ G+VT+V +V D + SRGFGF+ + DA
Sbjct: 75 NSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIR 134
Query: 97 SMNGKALLGR 106
S++ L GR
Sbjct: 135 SLDHSVLQGR 144
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDD-AKSAKD 96
KLFVGG++ E++L+ FS +G V E + +K +G+ RGFGFV F+ + D K+ +D
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 97 SMNGKALLGRPLRISFALEK 116
+ +LG+P+ + A+ K
Sbjct: 67 T---HFILGKPVDVRKAIRK 83
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVGGLS + E+ + F FG+ T+V +++D + R RGFGFV + +ED + S
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LF+ + ++ L AF SFG V ++ DK +G S+ FGFV + ++ A++A D M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 99 NGKALLGRPLRISFALEKARGVP 121
NG+ L G+ L++ + G P
Sbjct: 411 NGRHLGGKKLKVQLKRDSNNGQP 433
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KL+VG L +++ E L+ F +FG V V++ D ++G+ +GFGF+ F + +K+A+ +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 98 MNGK-ALLGRPLRIS 111
+NGK + GR +++S
Sbjct: 326 LNGKLEIAGRTIKVS 340
>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632567 FORWARD
LENGTH=220
Length = 220
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V L ++ L+ +F FG V ++ + D +G RGFGFV F DA AK M
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 99 NGKALLGRPLRISFALE 115
+G LLGR L + FA E
Sbjct: 98 DGYLLLGRELTVVFAEE 114
>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632695 FORWARD
LENGTH=287
Length = 287
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V L ++ L+ +F FG V ++ + D +G RGFGFV F DA AK M
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 99 NGKALLGRPLRISFALE 115
+G LLGR L + FA E
Sbjct: 98 DGYLLLGRELTVVFAEE 114
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIF-SAEDDAKSAKD 96
K+FVGGL+W ++++ D F +G + E I+ DK + RS+G+GFV F A+ ++ +D
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 97 S---MNGK------ALLGRPLRISFALEKARGVP 121
S +NG+ A LG LR S + + P
Sbjct: 78 STPIINGRRANCNLASLGGRLRKSPTMTSPQQGP 111
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L F +G++ E +V DK +G+++GFGFV+F AK A
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVG + + E+ L++ G V R+V D+++G+ +G+GF + E+ A SA+ ++
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 99 NGKALLGRPLRISFA 113
+ GR LR+ FA
Sbjct: 71 QSYEINGRQLRVDFA 85
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSA 94
K+FV GL W ++L F +G++ E +V DK +G+++GFGFV+F AK A
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LF G LS+ + +++ F G+V +VR+ D G +G+G + F++ ++A+ A + M
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALE-M 443
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPRFSNIG 131
NGK LLGR +R+ A E+ PR SN G
Sbjct: 444 NGKLLLGRDVRLDLANERG------TPRNSNPG 470
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N + V LS E L + F FG VT V + D+ +G SRGFGFV F + +DA+ A +
Sbjct: 240 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 299
Query: 97 SMNGKALLGRPLRISFA 113
+NG LR+ +A
Sbjct: 300 KLNGYGYDNLILRVEWA 316
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAED 89
K+FVGGL+ SV E + F+ FG +T+V ++YD + R RGFGF+ + +E+
Sbjct: 47 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 98
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N + V LS E L + F FG VT V + D+ +G SRGFGFV F + +DA+ A +
Sbjct: 213 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 272
Query: 97 SMNGKALLGRPLRISFA 113
+NG LR+ +A
Sbjct: 273 KLNGYGYDNLILRVEWA 289
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG LS V + L + FS + V ++V D ++GRS+G+GFV F E++ A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 98 MNGKALLGRPLRISFALEK 116
MNG R +RI A +
Sbjct: 259 MNGVKCSSRAMRIGPATPR 277
>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
Length = 262
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V L ++ L+ F FG V ++ + D +G RGFGF+ F DA AK M
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 99 NGKALLGRPLRISFALE 115
+G LLGR L + FA E
Sbjct: 99 DGYLLLGRELTVVFAEE 115
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 53.1 bits (126), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG LS V + L + FS + V ++V D ++GRS+G+GFV F E++ A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 98 MNGKALLGRPLRISFALEK 116
MNG R +R+ A K
Sbjct: 264 MNGAYCSNRQMRVGIATPK 282
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAF-SSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + F +S+ V ++V D+ +GR++G+GFV FS E + A
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 98 MNGKALLGRPLRISFALEKARGV 120
MNG RP+RI A K +GV
Sbjct: 217 MNGVPCSTRPMRIGPAASK-KGV 238
>AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=425
Length = 425
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V LS +V+E L++ F +FG+V V I D+ RG G+V F A DA+ A+ M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 99 NGKALLGRPLRISFAL 114
+G + G+ ++ +F L
Sbjct: 160 DGAQIDGKVVKATFTL 175
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG LS V + L + FS + V ++V D ++GRS+G+GFV F E++ A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 98 MNGKALLGRPLRISFA 113
MNG R +RI A
Sbjct: 259 MNGVKCSSRAMRIGPA 274
Score = 46.2 bits (108), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVGGL SV ++ L+ F+ FG++ V+I K G GFV F +A+ A + +
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEKL 359
Query: 99 NGKALLGRPLRISFALEKARGVP 121
NG + + +R+S+ A P
Sbjct: 360 NGTVIGKQTVRLSWGRNPANKQP 382
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 43 GLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSMNGKA 102
GLS ++SL+ F+ F R++ D+ + R +GFGF+ F +EDDA+ A ++NGK
Sbjct: 77 GLSAYTTDQSLRQLFAPFA-----RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 103 LLGRPLRISFALE 115
+ GR + + A E
Sbjct: 132 VNGRLIFVETAKE 144
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAF-SSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + F +S+ V ++V D+ +GR++G+GFV FS E + A
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 98 MNGKALLGRPLRISFALEK 116
MNG RP+RI A K
Sbjct: 217 MNGVPCSTRPMRIGPAASK 235
>AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=407
Length = 407
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V LS +V+E L++ F +FG+V V I D+ RG G+V F A DA+ A+ M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 99 NGKALLGRPLRISFAL 114
+G + G+ ++ +F L
Sbjct: 160 DGAQIDGKVVKATFTL 175
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + F + + V ++V D+ +GRS+G+GFV F+ E + A
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 98 MNGKALLGRPLRISFALEK 116
MNG+ RP+R A K
Sbjct: 235 MNGQYCSSRPMRTGPAANK 253
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+LF G L V++ L AF+ F +++ DK +G+++G+GFV F D +A
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 98 MNGKALLGRPLRISFALEKAR 118
MNGK + RP+++ + K R
Sbjct: 198 MNGKYVGNRPIKLRKSSWKER 218
>AT5G55670.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22544669-22546801 REVERSE LENGTH=585
Length = 585
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG L W + L+ +G V EV+ +K SG+S+G+ V F A + KD++
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 99 NGKALLGRPLRISFA 113
NG GRP + +A
Sbjct: 296 NGYPFNGRPCVVEYA 310
>AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=414
Length = 414
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V LS +V+E L++ F +FG+V V I D+ RG G+V F A DA+ A+ M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 99 NGKALLGRPLRISFAL 114
+G + G+ ++ +F L
Sbjct: 160 DGAQIDGKVVKATFTL 175
>AT5G55670.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22544669-22546801 REVERSE LENGTH=710
Length = 710
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG L W + L+ +G V EV+ +K SG+S+G+ V F A + KD++
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 99 NGKALLGRPLRISFA 113
NG GRP + +A
Sbjct: 296 NGYPFNGRPCVVEYA 310
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + FS + V ++V D ++GRS+G+GFV F E++ A
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 98 MNGKALLGRPLRISFA 113
MNG R +RI A
Sbjct: 261 MNGVKCSSRAMRIGPA 276
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+FVGGL SV ++ L+ FS FG++ V+I K G GFV F +A+ A + +
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEKL 361
Query: 99 NGKALLGRPLRISFALEKARGVP 121
NG + + +R+S+ A P
Sbjct: 362 NGTVIGKQTVRLSWGRNPANKQP 384
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 37 NKLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKD 96
N + V LS L + F FG VT + D+ + SRGFGFV F + +DA+ A +
Sbjct: 206 NSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAIN 265
Query: 97 SMNGKALLGRPLRISFALEKARGVPIVVPRFSNIGNL 133
+NG LR+ ++ K + P ++N+ L
Sbjct: 266 KLNGYGYDNLILRVEWSTPKTQLDPFSFADYNNLCKL 302
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L +++ L + FSSFG++ +++ D+ +G S+G+GFV ++ A +A +M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 99 NGKALLGRPLRISFA 113
NG GR L + A
Sbjct: 542 NGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L +++ L + FSSFG++ +++ D+ +G S+G+GFV ++ A +A +M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 99 NGKALLGRPLRISFA 113
NG GR L + A
Sbjct: 542 NGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G L +++ L + FSSFG++ +++ D+ +G S+G+GFV ++ A +A +M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 99 NGKALLGRPLRISFA 113
NG GR L + A
Sbjct: 542 NGYRFEGRTLAVRIA 556
>AT3G54230.1 | Symbols: SUA | suppressor of abi3-5 |
chr3:20073872-20080142 FORWARD LENGTH=1007
Length = 1007
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A ++
Sbjct: 434 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 493
Query: 99 NGKALL--GRPLRISFALE-KARGVPIVVPRFSN 129
N AL G+ LR+++A G I P SN
Sbjct: 494 NRTALERNGKILRVAYAKSVHGSGTGISAPSHSN 527
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
LFV L++ K L++ F + G V +++ ++ RS G+GFV F + A++A
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 98 MNGKALLGRPLRIS 111
GK LGRP+R++
Sbjct: 251 FQGKDFLGRPIRLA 264
>AT3G54230.2 | Symbols: SUA | suppressor of abi3-5 |
chr3:20073872-20080142 FORWARD LENGTH=1008
Length = 1008
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V GL DE+ L+ FS + ++R+V DK + SRGF FV F + +DA A ++
Sbjct: 435 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 494
Query: 99 NGKALL--GRPLRISFALE-KARGVPIVVPRFSN 129
N AL G+ LR+++A G I P SN
Sbjct: 495 NRTALERNGKILRVAYAKSVHGSGTGISAPSHSN 528
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG L+ EK +++ F FG V +V ++ D + +SRG GFV +S+++ A +A D
Sbjct: 137 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDG 195
Query: 98 MNGKALL---GRPLRISFALEK 116
+NG + +PL + FA K
Sbjct: 196 LNGTYTMRGCNQPLIVRFAEPK 217
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K++V GL W + L F FG++ ++V D + RS+GFGFV F + A A ++
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 98 MNGKALLGRPLRISFALEKAR 118
N + GR + A AR
Sbjct: 70 PN-HTIDGRTVNCKLAYLGAR 89
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG L+ EK +++ F FG V +V ++ D + +SRG GFV +S+++ A +A D
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDG 270
Query: 98 MNGKALL---GRPLRISFALEK 116
+NG + +PL + FA K
Sbjct: 271 LNGTYTMRGCNQPLIVRFAEPK 292
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
++VGG+ + + E L FS +G++ +V ++ DK +G+S+GF F+ + + A D++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 99 NGKALLGRPLRISFA 113
NG +LGR +++
Sbjct: 98 NGALVLGRTIKVDHC 112
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
LFV L++ K L++ F + G V +++ ++ RS G+GFV F + A++A
Sbjct: 131 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 190
Query: 98 MNGKALLGRPLRIS 111
GK LGRP+R++
Sbjct: 191 FQGKDFLGRPIRLA 204
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
KLFVG L+ EK +++ F FG V +V ++ D + +SRG GFV +S+++ A +A D
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDG 270
Query: 98 MNGKALL---GRPLRISFALEK 116
+NG + +PL + FA K
Sbjct: 271 LNGTYTMRGCNQPLIVRFAEPK 292
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634219-8639984 REVERSE LENGTH=946
Length = 946
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVY---DKDSGRSRGFGFVIFSAEDDAKSAK 95
L+VG LS VDE L F FG + V+I++ D++ R R GFV F D ++AK
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAAK 240
Query: 96 DSMNGKALLGRPLRISFALEKARGVP 121
D M G + L+I + KA +P
Sbjct: 241 DEMQGIIVYEYELKIGWG--KAVSLP 264
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSS-FGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+FVG L+ V + L + F+ + V ++V D ++GRS+G+GFV F E++ A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 98 MNGKALLGRPLRISFALEK 116
MNG R +R+ A K
Sbjct: 275 MNGAFCSSRQMRVGIATPK 293
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
K+FVG L+W L+ F FGQV + +V + GRS+G+GF+ F D + +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF--RDYVSTVRAL 70
Query: 98 MNGKALL-GRPLRISFA 113
N K ++ GR + A
Sbjct: 71 QNSKPIIDGRTTNCNLA 87
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LF+ + +++ L F FG+V ++ DK +G S+ FGF+ + ++ A++A ++M
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 99 NGKALLGRPLRISF 112
NG L G+ L++
Sbjct: 401 NGCQLSGKKLKVQL 414
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LF+ + +++ L F FG+V ++ DK +G S+ FGF+ + ++ A++A ++M
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 99 NGKALLGRPLRISF 112
NG L G+ L++
Sbjct: 392 NGCQLSGKKLKVQL 405
>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor
28 | chr5:6268925-6271158 REVERSE LENGTH=236
Length = 236
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L + L L+D+F FG + ++ + + +G RGFGFV + +DA A M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 99 NGKALLGRPLRISFALEKARGVP 121
N K + GR + I FA E+ R P
Sbjct: 109 NHKVIGGREIAIVFA-EENRKTP 130
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 48.9 bits (115), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFV L++ E ++ F S+G + V +V D+ + + +G+ F+ + D K+A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 99 NGKALLGRPLRISFALEKARGVPIVVPR 126
+G+ + GR R+ +E+ R VP PR
Sbjct: 200 DGQKIDGR--RVLVDVERGRTVPNWRPR 225
>AT1G13190.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:4499633-4501354 FORWARD LENGTH=573
Length = 573
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG L W + ++ S +G+V E++ ++ SG+S+G+ V F A + K+ M
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 99 NGKALLGRPLRISFA 113
NG G+ ++FA
Sbjct: 264 NGFIFNGKACVVAFA 278
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+L+VG L ++ E L+ F SFG V V++ D ++G +GFGFV F+ +DA++A +
Sbjct: 324 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN- 381
Query: 98 MNGK-ALLGRPLRIS 111
+NG+ + GR +++S
Sbjct: 382 LNGQLEIAGRAIKVS 396
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDA 91
KLF+ GL+ + L+ FSS+G + E ++ DK +G+S+G+GFV F D A
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDA 91
KLF+ GL+ + L+ FSS+G + E ++ DK +G+S+G+GFV F D A
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+L+VG L ++ E L+ F SFG V V++ D ++G +GFGFV F+ +DA++A +
Sbjct: 335 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN- 392
Query: 98 MNGK-ALLGRPLRIS 111
+NG+ + GR +++S
Sbjct: 393 LNGQLEIAGRAIKVS 407
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+ V GL +S+ L++AFS G V +V +K S RGF FV F+ ++D A +
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 99 NGKALLGRPLRISFA 113
NG + GR + + A
Sbjct: 82 NGSTVGGRRITVKQA 96
>AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1323700-1325486 FORWARD LENGTH=222
Length = 222
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L++G + E ++ FS FG V VR+ +K +G+S+ FGF+ F + A+ A +M
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 99 NGKALLGRPLRI 110
N L+ L++
Sbjct: 122 NDYLLMEHMLKV 133
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 38 KLFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDS 97
+L+VG L ++ E L+ F SFG V V++ D ++G +GFGFV F+ +DA++A +
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN- 343
Query: 98 MNGK-ALLGRPLRIS 111
+NG+ + GR +++S
Sbjct: 344 LNGQLEIAGRAIKVS 358
>AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing factor
30 | chr3:20561024-20563502 FORWARD LENGTH=262
Length = 262
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V + + L++ F FG V +V I D SG+ RGF FV F DA A+ SM
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 99 NGKALLGRPLRISFALE 115
N ++ GR + + A E
Sbjct: 109 NRRSFAGREITVVVASE 125
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VGG+ +V + L++ FS FG++ + R + R R F+ + DDA AK SM
Sbjct: 97 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFL------RERKTAFIDYYEMDDALQAK-SM 149
Query: 99 NGKALLGRPLRISFALEKA 117
NGK + G LR+ F +A
Sbjct: 150 NGKPMGGSFLRVDFLRSQA 168
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VGG+ +V + L++ FS FG++ + R + R R F+ + DDA AK SM
Sbjct: 97 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFL------RERKTAFIDYYEMDDALQAK-SM 149
Query: 99 NGKALLGRPLRISFALEKA 117
NGK + G LR+ F +A
Sbjct: 150 NGKPMGGSFLRVDFLRSQA 168
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VGG+ +V + L++ FS FG++ + R + R R F+ + DDA AK SM
Sbjct: 97 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFL------RERKTAFIDYYEMDDALQAK-SM 149
Query: 99 NGKALLGRPLRISFALEKA 117
NGK + G LR+ F +A
Sbjct: 150 NGKPMGGSFLRVDFLRSQA 168
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VGG+ +V + L++ FS FG++ + R + R R F+ + DDA AK SM
Sbjct: 97 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFL------RERKTAFIDYYEMDDALQAK-SM 149
Query: 99 NGKALLGRPLRISFALEKA 117
NGK + G LR+ F +A
Sbjct: 150 NGKPMGGSFLRVDFLRSQA 168
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F+ +G+V +V I D+ +G SRGF FV + +D+A A + +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRVVDGREITVQFA 92
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L V +++ L F+ +G+V +V I D+ +G SRGF FV + +D+A A + +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 99 NGKALLGRPLRISFA 113
+G+ + GR + + FA
Sbjct: 78 DGRVVDGREITVQFA 92
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
LFVG LS E +L++ S +G++ +R+V +G SRG+GFV + E + A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 99 NGKALLGRPLRISFALEK 116
+ + GR + + + ++
Sbjct: 126 HHSLIDGREIIVDYNRQQ 143
>AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicing
factor 33 | chr1:20630676-20632695 FORWARD LENGTH=300
Length = 300
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYD------------KDSGRSRGFGFVIFS 86
L V L ++ L+ +F FG V ++ + D K S RGFGFV F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFM 97
Query: 87 AEDDAKSAKDSMNGKALLGRPLRISFALE 115
DA AK M+G LLGR L + FA E
Sbjct: 98 DPADAADAKHHMDGYLLLGRELTVVFAEE 126
>AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr1:19103072-19104753 REVERSE
LENGTH=202
Length = 202
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 43/76 (56%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
+ V G+ E+ + +AF FG++ + + D+ SG +G+ + + +++A+SA +M
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 99 NGKALLGRPLRISFAL 114
NG LL + + + +A
Sbjct: 157 NGAELLTQNVSVDWAF 172
>AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462697-7467630 FORWARD LENGTH=823
Length = 823
Score = 45.8 bits (107), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 39 LFVGGLSWSVDEKSLQDAFSSFGQVTEVRIVYDKDSGRSRGFGFVIFSAEDDAKSAKDSM 98
L+VG L + E+ L D F FG++ + GRS + FV F+ ++DA +A +S+
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAF----QPGRS--YAFVNFNHDEDAFAAIESL 78
Query: 99 NGKALLGRPLRISFA 113
G L G PLRI FA
Sbjct: 79 QGFPLSGNPLRIEFA 93