Miyakogusa Predicted Gene

Lj6g3v1050180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1050180.1 tr|B9IM52|B9IM52_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_578659 PE=4
SV=1,41.6,0.0000000009,seg,NULL,CUFF.58832.1
         (306 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16850.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   139   2e-33

>AT4G16850.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G31130.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:9480699-9481640 FORWARD LENGTH=313
          Length = 313

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 16/293 (5%)

Query: 18  LFDSLRILLHNKLLFCXXXXXXXXXXXXXXXXXXXXXXXXRYQIYHLQALARVVSTRVES 77
           L DS  IL  NK +                          +  ++ L+ALA VV TR E+
Sbjct: 17  LLDSFMILFRNKHILLPIFAFIAIPLAALHLSLTLTSFRLKNHVFRLEALANVVHTRFEA 76

Query: 78  GHVLEESRVNAISLIRTRGXXXXXXXXXXXXXXXXXXHATISSFNGKHASVSSAITAVKT 137
             + +ESR +A+SL+  +                    +T  S  G + S+ S+  +VK+
Sbjct: 77  RQIWQESREDAVSLLHLKFRYFVPSFILSCMASITVITSTSFSHQGINPSLKSSFASVKS 136

Query: 138 TWKRPSVTAIFAYTILFAFSPVPRVLAFVF---PAARLPILAVGSVVEVYLMAVMSLGIV 194
           +W R + T+I  Y +LF +SP+   L+ +    P  R  I  +   VEVY+MA+  LG V
Sbjct: 137 SWMRVTATSIIVYGLLFLYSPISMFLSALVGYTPTLRYLITILFLGVEVYIMAITGLGFV 196

Query: 195 VSVAEERLGWEAVTVGSGLMRGRRVCGWXXXXXXXXXXXXINRRVEELLEGED------- 247
           VSV EER G++A+  G+ LM+GRR+ G             I   +E+L +  D       
Sbjct: 197 VSVLEERYGFDAIKEGTALMKGRRITGLALAGVFVFLSSFIGHGMEKLAKELDMDLSSGS 256

Query: 248 ---SISV---WDRTVLICWYGLVVLLSYVITTVFYCDSRKRHAIREPQVEEDD 294
              S+ V   WD   L+C YG  V+LSYV+ TVFYC+ RKRH      V +++
Sbjct: 257 WWRSVVVAGGWDGWKLVCMYGAEVVLSYVVITVFYCECRKRHGNSYAIVADEE 309