Miyakogusa Predicted Gene

Lj6g3v1048930.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1048930.1 tr|F4Q6Z5|F4Q6Z5_DICFS Transmembrane protein
OS=Dictyostelium fasciculatum (strain SH3) GN=tmem208
P,35.29,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Protein of
unknown function DUF788, TMEM208; DUF788,Prote,CUFF.58815.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23940.1 | Symbols:  | Protein of unknown function (DUF788) |...   255   1e-68
AT4G30500.1 | Symbols:  | Protein of unknown function (DUF788) |...   230   4e-61

>AT2G23940.1 | Symbols:  | Protein of unknown function (DUF788) |
           chr2:10184199-10185097 FORWARD LENGTH=173
          Length = 173

 Score =  255 bits (651), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 117/173 (67%), Positives = 137/173 (79%)

Query: 1   MANQGAKKRKEENVRHMARLRQVIIACNVVYVLIRMLIFHSSFTWKHWIGLVITSAAYLI 60
           MANQGAKKRKEEN +HMA+LR++IIA N VY ++RMLIF+SSFTWKHWIGLVITS AY  
Sbjct: 1   MANQGAKKRKEENAKHMAKLRRIIIASNAVYFVVRMLIFYSSFTWKHWIGLVITSLAYAF 60

Query: 61  PYQQLAKMANPAYAQDGELLDGGFDMTTGGVCGYLHDVIYITCFVQVMSIISGKFWYIYL 120
           PY+QL +MA P+   DGEL+DGGFDMTTGG+CGYLHDVIYITCFVQ+ SII+GKFWY YL
Sbjct: 61  PYKQLDQMAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYL 120

Query: 121 VIPAFGLYQSFGFIRGFLPQGSEESVXXXXXXXXXXXXXXXASRPKFVKSRTR 173
           VIPAFG+Y++ G IRGF+ QGSE  V               ASR + VK+RTR
Sbjct: 121 VIPAFGVYKASGLIRGFMSQGSEGGVEDEKSRKKREKMERKASRGQVVKTRTR 173


>AT4G30500.1 | Symbols:  | Protein of unknown function (DUF788) |
           chr4:14903558-14904764 FORWARD LENGTH=173
          Length = 173

 Score =  230 bits (586), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 131/173 (75%)

Query: 1   MANQGAKKRKEENVRHMARLRQVIIACNVVYVLIRMLIFHSSFTWKHWIGLVITSAAYLI 60
           MANQGAKKRK+EN RHMA+LR ++I CN++YVL+R++I HSS TWK+WIGLV+TS  Y I
Sbjct: 1   MANQGAKKRKDENARHMAKLRLIMILCNILYVLVRVIISHSSHTWKNWIGLVLTSLGYGI 60

Query: 61  PYQQLAKMANPAYAQDGELLDGGFDMTTGGVCGYLHDVIYITCFVQVMSIISGKFWYIYL 120
           PY+ L +MA P+ +  GELLDGGFDM+T G+CGYLHDV+YITCFVQV SIISGKFWY YL
Sbjct: 61  PYKLLHQMAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYL 120

Query: 121 VIPAFGLYQSFGFIRGFLPQGSEESVXXXXXXXXXXXXXXXASRPKFVKSRTR 173
           VIPAFG Y++ G I+G L  GSE  V               ASR + VK+R+R
Sbjct: 121 VIPAFGAYKASGLIKGLLSHGSEGGVEDEKTRKKREKMERKASRGQVVKTRSR 173