Miyakogusa Predicted Gene
- Lj6g3v1048930.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1048930.1 tr|F4Q6Z5|F4Q6Z5_DICFS Transmembrane protein
OS=Dictyostelium fasciculatum (strain SH3) GN=tmem208
P,35.29,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Protein of
unknown function DUF788, TMEM208; DUF788,Prote,CUFF.58815.1
(173 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G23940.1 | Symbols: | Protein of unknown function (DUF788) |... 255 1e-68
AT4G30500.1 | Symbols: | Protein of unknown function (DUF788) |... 230 4e-61
>AT2G23940.1 | Symbols: | Protein of unknown function (DUF788) |
chr2:10184199-10185097 FORWARD LENGTH=173
Length = 173
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 117/173 (67%), Positives = 137/173 (79%)
Query: 1 MANQGAKKRKEENVRHMARLRQVIIACNVVYVLIRMLIFHSSFTWKHWIGLVITSAAYLI 60
MANQGAKKRKEEN +HMA+LR++IIA N VY ++RMLIF+SSFTWKHWIGLVITS AY
Sbjct: 1 MANQGAKKRKEENAKHMAKLRRIIIASNAVYFVVRMLIFYSSFTWKHWIGLVITSLAYAF 60
Query: 61 PYQQLAKMANPAYAQDGELLDGGFDMTTGGVCGYLHDVIYITCFVQVMSIISGKFWYIYL 120
PY+QL +MA P+ DGEL+DGGFDMTTGG+CGYLHDVIYITCFVQ+ SII+GKFWY YL
Sbjct: 61 PYKQLDQMAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYL 120
Query: 121 VIPAFGLYQSFGFIRGFLPQGSEESVXXXXXXXXXXXXXXXASRPKFVKSRTR 173
VIPAFG+Y++ G IRGF+ QGSE V ASR + VK+RTR
Sbjct: 121 VIPAFGVYKASGLIRGFMSQGSEGGVEDEKSRKKREKMERKASRGQVVKTRTR 173
>AT4G30500.1 | Symbols: | Protein of unknown function (DUF788) |
chr4:14903558-14904764 FORWARD LENGTH=173
Length = 173
Score = 230 bits (586), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/173 (61%), Positives = 131/173 (75%)
Query: 1 MANQGAKKRKEENVRHMARLRQVIIACNVVYVLIRMLIFHSSFTWKHWIGLVITSAAYLI 60
MANQGAKKRK+EN RHMA+LR ++I CN++YVL+R++I HSS TWK+WIGLV+TS Y I
Sbjct: 1 MANQGAKKRKDENARHMAKLRLIMILCNILYVLVRVIISHSSHTWKNWIGLVLTSLGYGI 60
Query: 61 PYQQLAKMANPAYAQDGELLDGGFDMTTGGVCGYLHDVIYITCFVQVMSIISGKFWYIYL 120
PY+ L +MA P+ + GELLDGGFDM+T G+CGYLHDV+YITCFVQV SIISGKFWY YL
Sbjct: 61 PYKLLHQMAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYL 120
Query: 121 VIPAFGLYQSFGFIRGFLPQGSEESVXXXXXXXXXXXXXXXASRPKFVKSRTR 173
VIPAFG Y++ G I+G L GSE V ASR + VK+R+R
Sbjct: 121 VIPAFGAYKASGLIKGLLSHGSEGGVEDEKTRKKREKMERKASRGQVVKTRSR 173