Miyakogusa Predicted Gene
- Lj6g3v1038840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1038840.1 tr|J7GY52|J7GY52_NEMVE Vasa-like protein
(Fragment) OS=Nematostella vectensis PE=2 SV=1,32.78,3e-18,Retrovirus
zinc finger-like domains,Zinc finger, CCHC-type; ZF_CCHC,Zinc finger,
CCHC-type; no descr,CUFF.58804.1
(562 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 291 6e-79
AT5G36240.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 113 4e-25
AT3G43490.1 | Symbols: | Zinc knuckle (CCHC-type) family protei... 85 1e-16
AT4G36020.1 | Symbols: CSDP1 | cold shock domain protein 1 | chr... 83 5e-16
AT2G17870.1 | Symbols: ATCSP3, CSP3 | cold shock domain protein ... 73 5e-13
AT1G75560.2 | Symbols: | zinc knuckle (CCHC-type) family protei... 67 4e-11
AT1G75560.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 67 4e-11
AT5G52380.1 | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:2... 56 7e-08
AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 50 3e-06
AT2G37340.2 | Symbols: RSZ33, RS2Z33, AT-RS2Z33 | arginine/serin... 50 5e-06
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argin... 50 6e-06
AT2G37340.3 | Symbols: RSZ33, RS2Z33, AT-RS2Z33 | arginine/serin... 49 7e-06
>AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr3:15509753-15512255 FORWARD LENGTH=551
Length = 551
Score = 291 bits (746), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 196/496 (39%), Positives = 253/496 (51%), Gaps = 60/496 (12%)
Query: 41 LSLKIVEKAIRMRTA--KLASNDTVSNXXXXXXXVVLPSQQSELAAALSDGVLDWPSVIA 98
LSLKI+EKA+ R KL S+ L S ++ + +GV
Sbjct: 44 LSLKILEKALSRRDVGNKLDSD--------------LSSDSGVVSTVMVNGVKSKVKKSE 89
Query: 99 GSQVXXXXXXXXT-VLTVESGDQGVVRAEEQEIEGTIEAAENQEAVEASMVQVGDNMVLR 157
S+ + + DQ + E+ ++G E E + + E + N+VL+
Sbjct: 90 SSKKMKRNKLEADHEIPIVWNDQDEEKVVEEIVKGEGEDDEVERSDEPKTEETASNLVLK 149
Query: 158 KLLRGPRYFDPPDSSWGACYNCGEEGHAAVNC-TAAKRKKPCYVCGGLGHSAKQCIKGHD 216
KLLRG RYFDPPD+ W +CY+CGE+GH + NC T KR+KPC++CG L H AKQC KGHD
Sbjct: 150 KLLRGARYFDPPDAGWVSCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD 209
Query: 217 CYICKKGGHRAKDCPEKYTRASKSLTVCLRCGNSGHDMFSCKNDYSLDDLKEIRCYICKT 276
CYICKK GHRAKDCP+KY SK VCLRCG+ GHDM CK +YS +DLK+++CYICK+
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKG-AVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKS 268
Query: 277 FGHLCCVNTENATRGEVSCYKCGQLGHTGLACTRLRGES--TGASMP---------SSCF 325
FGHLCCV N+ VSCY+CGQLGH+GLAC R ES ++ P S C+
Sbjct: 269 FGHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECY 328
Query: 326 RCGEEGHFARECTNLIKAGKKNSEFSNTKTKNSYGENDYMGHRSAPPDLGKTRNKRRPPT 385
RCGEEGHFAREC N + S T G + R P ++ R T
Sbjct: 329 RCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFA--RECPNSSQVSKRDRETST 386
Query: 386 EDRVFKTPKKSKSRGGWT-------------TEYPAEERGFTTPKKSKSRGGWMTEHPAE 432
+ K S T + EE+ T+P+K K RGGW+TE P E
Sbjct: 387 TSHKSRKKNKENSEHDSTPHESNGKTKKKKKKKTHKEEQPQTSPRKRKHRGGWITEEPEE 446
Query: 433 ERDYTTPKKSKNRGGWMTEHPGEFSPSSSQRSNQTNAWTASTRSTQFYAHGSGSHTPSTN 492
E S RG M +PS RS T+ + RS +F SG H P +
Sbjct: 447 E--------SFQRGK-MRRPKSPITPSGYNRSPSTHI-GHNYRSPKF---NSGGHYPGSQ 493
Query: 493 YSSRVWQGQPGASNYQ 508
SSR G P S +Q
Sbjct: 494 -SSRHHSG-PSPSRWQ 507
>AT5G36240.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr5:14277972-14278924 REVERSE LENGTH=254
Length = 254
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 243 VCLRCGNSGHDMFSCKNDYSLDDLKEIRCYICKTFGHLCCVNTENATRGEVSCYKCGQLG 302
VCLRCG GHDM CK +YS +DLK I+CY+C + GHLCC+ + VSCY+CGQLG
Sbjct: 27 VCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLG 86
Query: 303 HTGLACTRLRGESTGASMPSSCFRCGEEGHFARECTN 339
HTGLAC G S+ SCF CG EGHF +C N
Sbjct: 87 HTGLAC----GRHYDDSVSPSCFICGREGHFEHQCHN 119
>AT3G43490.1 | Symbols: | Zinc knuckle (CCHC-type) family protein |
chr3:15398859-15400079 FORWARD LENGTH=260
Length = 260
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 84/189 (44%), Gaps = 31/189 (16%)
Query: 34 DDEANQDLSLKIVEKAIRMRTAKLASNDTVSNXXXXXXXVVLPSQQSELAAALSDGVLDW 93
DDEAN+DL LKI+EKA R + +S V++ +SE V +
Sbjct: 23 DDEANEDLRLKILEKAFSRRNVDNKLDSDLSFDPGVVSTVMVNGGKSE-------EVKNS 75
Query: 94 PSVIAGSQVXXXXXXXXTVLTVESGDQG-----VVRAEEQEIEGTIEAAENQEAVEASMV 148
S + VE D+ VVR EE++ E T
Sbjct: 76 KSNKKMKRNKLEAANEIVTHCVERQDEDNMVEDVVRGEEEDGETT--------------- 120
Query: 149 QVGDNMVLRKLLRGPRYFDPPDSSWGACYNCGEEGHAAVNC-TAAKRKKPCYVCGGLGHS 207
N V+ KLLRG RYFDP D+ W CY+CGE+ H V+C T +K C++C L H
Sbjct: 121 ---SNSVMTKLLRGARYFDPLDAGWVTCYSCGEKDHITVSCPTLTNCRKSCFICASLEHG 177
Query: 208 AKQCIKGHD 216
A+QC K D
Sbjct: 178 ARQCTKVWD 186
>AT4G36020.1 | Symbols: CSDP1 | cold shock domain protein 1 |
chr4:17043443-17044342 REVERSE LENGTH=299
Length = 299
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 87/202 (43%), Gaps = 42/202 (20%)
Query: 176 CYNCGEEGHAAVNCTAAKRKKP----------CYVCGGLGHSAKQCIK------------ 213
CYNCGE GH + +C CY CG GH A+ C
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 214 GHD-CYICKKGGHRAKDCPEKYTRASKSLTV-------CLRCGNSGHDMFSCKNDYSLDD 265
G+D CY C GH A+DC +K C CG+ GH C + +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 266 LKEI-----RCYICKTFGHLC--CVNTENATRGEVSCYKCGQLGHTGLACTRLRGESTGA 318
++ CY C GH+ C +RG CY+CG GH C + RG S G
Sbjct: 222 VRSGGGGSGTCYSCGGVGHIARDCATKRQPSRG---CYQCGGSGHLARDCDQ-RG-SGGG 276
Query: 319 SMPSSCFRCGEEGHFARECTNL 340
++C++CG+EGHFAREC+++
Sbjct: 277 GNDNACYKCGKEGHFARECSSV 298
>AT2G17870.1 | Symbols: ATCSP3, CSP3 | cold shock domain protein 3 |
chr2:7764276-7765181 REVERSE LENGTH=301
Length = 301
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 172 SWGACYNCGEEGHAAVNC--------------TAAKRKKPCYVCGGLGHSAKQCIKGHD- 216
S G C+NCGE GH A +C + + CY+CG +GH A+ C +
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 217 -----------CYICKKGGHRAKDCPEKYTRASKSLTV--------CLRCGNSGHDMFSC 257
CY C + GH AKDC C CG GH C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 258 KNDYSLDDLKEIR-CYICKTFGHLCCVNTEN----ATRGEVSCYKCGQLGHTGLACTR-L 311
+ + + CY C GH+ V T G +CY+CG GH C R
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRG 271
Query: 312 RGESTGASMPSSCFRCGEEGHFARECTNL 340
G S G + CF CG+EGHFARECT++
Sbjct: 272 SGSSGGGGGSNKCFICGKEGHFARECTSV 300
>AT1G75560.2 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr1:28371420-28372717 REVERSE LENGTH=257
Length = 257
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 75/199 (37%), Gaps = 41/199 (20%)
Query: 163 PRYFDPPDSSWGACYNCGEEGHAAVNCTAAKRKKPCYVCGGLGHSAKQCIKGHDCYICKK 222
P +F S+ C NCG GH A CTA R C+ C GH A C C+ C K
Sbjct: 63 PGHFARDCSNVSVCNNCGLPGHIAAECTAESR---CWNCREPGHVASNCSNEGICHSCGK 119
Query: 223 GGHRAKDCPEKYTRASKSLTVCLRCGNSGHDMFSCKNDYSLDDLKEIRCYICKTFGHLCC 282
GHRA+DC +RA L +C C GH C ND + C C+T GH+
Sbjct: 120 SGHRARDCSNSDSRAG-DLRLCNNCFKQGHLAADCTNDKA--------CKNCRTSGHI-- 168
Query: 283 VNTENATRGEVSCYKCGQLGHTGLAC------------------------TRLRGESTGA 318
R + C C GH C +R+ + G
Sbjct: 169 ---ARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMSRDREGV 225
Query: 319 SMPSSCFRCGEEGHFAREC 337
S C CG GH A EC
Sbjct: 226 SAMIICHNCGGRGHRAYEC 244
>AT1G75560.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr1:28371420-28372717 REVERSE LENGTH=257
Length = 257
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 75/199 (37%), Gaps = 41/199 (20%)
Query: 163 PRYFDPPDSSWGACYNCGEEGHAAVNCTAAKRKKPCYVCGGLGHSAKQCIKGHDCYICKK 222
P +F S+ C NCG GH A CTA R C+ C GH A C C+ C K
Sbjct: 63 PGHFARDCSNVSVCNNCGLPGHIAAECTAESR---CWNCREPGHVASNCSNEGICHSCGK 119
Query: 223 GGHRAKDCPEKYTRASKSLTVCLRCGNSGHDMFSCKNDYSLDDLKEIRCYICKTFGHLCC 282
GHRA+DC +RA L +C C GH C ND + C C+T GH+
Sbjct: 120 SGHRARDCSNSDSRAG-DLRLCNNCFKQGHLAADCTNDKA--------CKNCRTSGHI-- 168
Query: 283 VNTENATRGEVSCYKCGQLGHTGLAC------------------------TRLRGESTGA 318
R + C C GH C +R+ + G
Sbjct: 169 ---ARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMSRDREGV 225
Query: 319 SMPSSCFRCGEEGHFAREC 337
S C CG GH A EC
Sbjct: 226 SAMIICHNCGGRGHRAYEC 244
>AT5G52380.1 | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 |
chr5:21261521-21263061 REVERSE LENGTH=268
Length = 268
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 198 CYVCGGLGHSAKQCIKGHD------CYICKKGGHRAKDCPEKYTRASKSLTVCLRCGNSG 251
C++C H AK C + + C C++ GH K+CPEK +S+ +C CG++G
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEK-KLCYNCGDTG 134
Query: 252 HDMFSCKNDYSLDD--LKEIRCYICKTFGHL---CCVNTENATRGEVSCYKCGQLGHTGL 306
H + C Y ++D K C+ICK GH+ C N C CG + H
Sbjct: 135 HSLSHC--PYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVK 192
Query: 307 AC 308
C
Sbjct: 193 DC 194
>AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr3:14946458-14948097 REVERSE LENGTH=372
Length = 372
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 42/145 (28%)
Query: 214 GHDCYICKKGGHRAKDC-------PEKYTRASKSLTVCLRCGNSGHDMFSCKND-----Y 261
G CY C K GH A+DC P K T A+ C +CG GH C Y
Sbjct: 236 GTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGD---CFKCGKPGHWSRDCTAQSGNPKY 292
Query: 262 SLDDLKEIRCYICKTFGHLCCVNTENATRGEVSCYKCGQLGHTGLACTRLR-------GE 314
+K +++ GE CYKCG+ GH CT G+
Sbjct: 293 EPGQMKS------------------SSSSGE--CYKCGKQGHWSRDCTGQSSNQQFQSGQ 332
Query: 315 STGASMPSSCFRCGEEGHFARECTN 339
+ S C++CG+ GH++R+CT+
Sbjct: 333 AKSTSSTGDCYKCGKAGHWSRDCTS 357
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 52/143 (36%), Gaps = 34/143 (23%)
Query: 176 CYNCGEEGHAAVNCTAAKRKKPCYVCGGLGHSAKQCIKGHDCYICKKGGHRAKDCPE--- 232
CY CG+EGH A +CT P K DC+ C K GH ++DC
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGP----------VKSTSAAGDCFKCGKPGHWSRDCTAQSG 288
Query: 233 --KY----TRASKSLTVCLRCGNSGHDMFSCKNDYSLDDLKEIRCYICKTFGHLCCVNTE 286
KY ++S S C +CG GH C S +
Sbjct: 289 NPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQS---------------GQA 333
Query: 287 NATRGEVSCYKCGQLGHTGLACT 309
+T CYKCG+ GH CT
Sbjct: 334 KSTSSTGDCYKCGKAGHWSRDCT 356
>AT2G37340.2 | Symbols: RSZ33, RS2Z33, AT-RS2Z33 |
arginine/serine-rich zinc knuckle-containing protein 33
| chr2:15670372-15671477 REVERSE LENGTH=260
Length = 260
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 157 RKLLRGPRYFD---PPDSSWGACYNCGEEGHAAVNCTAAKRKKPCYVCGGLGHSAKQC 211
R RG R FD PP + G C+NCG +GH A +CTA K CY CG GH + C
Sbjct: 50 RGAPRGSRDFDSRGPPPGA-GRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 106
>AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 |
arginine/serine-rich zinc knuckle-containing protein 33
| chr2:15670372-15672331 REVERSE LENGTH=290
Length = 290
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 157 RKLLRGPRYFDP--PDSSWGACYNCGEEGHAAVNCTAAKRKKPCYVCGGLGHSAKQC 211
R RG R FD P G C+NCG +GH A +CTA K CY CG GH + C
Sbjct: 80 RGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
>AT2G37340.3 | Symbols: RSZ33, RS2Z33, AT-RS2Z33 |
arginine/serine-rich zinc knuckle-containing protein 33
| chr2:15670372-15671584 REVERSE LENGTH=249
Length = 249
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 157 RKLLRGPRYFDP--PDSSWGACYNCGEEGHAAVNCTAAKRKKPCYVCGGLGHSAKQC 211
R RG R FD P G C+NCG +GH A +CTA K CY CG GH + C
Sbjct: 39 RGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95