Miyakogusa Predicted Gene
- Lj6g3v1028520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1028520.1 Non Chatacterized Hit- tr|A5B8I5|A5B8I5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.21,0.0000000001,UBN2_3,NULL,CUFF.58785.1
(308 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotrans... 90 2e-18
AT5G48050.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotrans... 51 9e-07
>AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s:
Retrotransposon gag protein (InterPro:IPR005162); Has
707 Blast hits to 705 proteins in 25 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:7447690-7448403 REVERSE LENGTH=237
Length = 237
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 10/191 (5%)
Query: 29 NYLKWSQLVGRTLKGKGKANHLTGDAPKEG--DPKFTKWDEEDSMIMAWLWNSMIPEITD 86
NY+ W L+ K + G PK P + W++ ++M+M WL NSM ++ +
Sbjct: 41 NYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLE 100
Query: 87 TCMFLNSAKEIWKAMEETNSKAKDAAQIYDVKVKTMAAKQGNKTVTEYANQLKSLWMELD 146
+ M+ +A ++W+ + D +IY ++ + +QG +V EY +L +WMEL
Sbjct: 101 SVMYAETAHKMWEDLRRVFVPCVD-LKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELS 159
Query: 147 HYRVI-KAKCPADSAML----KEYIEQDRVYDFLVG--LNSDFDQVRAQILGKEKVPGIN 199
Y I + KC + +E E+++ Y+FL+G LN F+ V +I+ ++ P ++
Sbjct: 160 EYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLH 219
Query: 200 EVVAMVRSEES 210
E AMV+ ES
Sbjct: 220 EAFAMVKDAES 230
>AT5G48050.1 | Symbols: | CONTAINS InterPro DOMAIN/s:
Retrotransposon gag protein (InterPro:IPR005162); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:19472661-19473770
REVERSE LENGTH=369
Length = 369
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 36/273 (13%)
Query: 25 LNGKNYLKWSQLVGRTLKGKGKANHLTGDA-PKEGDPKFTKWDEEDSMIMAWLWNSMIPE 83
LN NY W +L G H+ G + P K +W E D ++ W++ ++
Sbjct: 28 LNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEK--RWKERDGLVKMWIYGTITDS 85
Query: 84 ITDTCMFLN-SAKEIWKAMEETNSKAKDAAQI-YDVKVKTMAAKQGNKTVTEYANQLKSL 141
+ DT + + +A+++W ++E K+A + ++ +++T + +V EY +LKSL
Sbjct: 86 LLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTID--DLSVHEYCQKLKSL 143
Query: 142 WMELDHYRVIKAKCPADSAMLKEYIEQDRVYDFLVGLNSDFDQVRAQILGKEKVPGINEV 201
L P +L V L GL +D + I K P E
Sbjct: 144 SDLL-----TNVDSPISDRVL--------VMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 202 VAMVRSEESRRGVMLETPTVENSAMKASGVSAMIADQKK-------GGISNM-----EKK 249
+M+ EESR ++ + S V + Q++ SNM +KK
Sbjct: 191 RSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMGRGRSKKK 250
Query: 250 GEGVWCTNCNRPRHTRENCWKLYGKPPSREWGP 282
G ++ R+ N W+L +PP+ +GP
Sbjct: 251 NRGGGSSDG---RYNNNNNWRL-NQPPTWIYGP 279