Miyakogusa Predicted Gene

Lj6g3v1018400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1018400.1 Non Chatacterized Hit- tr|I3SMC1|I3SMC1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,87.88,0.00000002,
,CUFF.58777.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25950.1 | Symbols:  | Protein of unknown function (DUF1000) ...    51   1e-07

>AT2G25950.1 | Symbols:  | Protein of unknown function (DUF1000) |
          chr2:11068735-11070524 FORWARD LENGTH=204
          Length = 204

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 27/32 (84%)

Query: 24 VSALNEATPGSVRSVFKAWEDRLNSSGNHLET 55
          VSALNE+  GS +SVFKAWE RL+SSG HLE+
Sbjct: 29 VSALNESVSGSAKSVFKAWEQRLHSSGEHLES 60