Miyakogusa Predicted Gene

Lj6g3v1018300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1018300.1 Non Chatacterized Hit- tr|C5XMA3|C5XMA3_SORBI
Putative uncharacterized protein Sb03g023720
OS=Sorghu,51.95,0.00000000000005,seg,NULL; IGR,IGR protein
motif,CUFF.58766.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26800.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   142   5e-35
AT3G05810.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   127   2e-30

>AT5G26800.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein
           motif (InterPro:IPR019083); BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G05810.1);
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:9425224-9426485 FORWARD
           LENGTH=112
          Length = 112

 Score =  142 bits (358), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 87/114 (76%), Gaps = 7/114 (6%)

Query: 1   MAWLQRSFNRGAFPVSTQSPC-----FSRFFSKSSSPYVVKVGIPEFLNGIGKGVESHVA 55
           MAW++    + A  V T +P      F RF+SKS++PY VKVGIPEFL+GIG GVE+H+A
Sbjct: 1   MAWMR--LIQSARSVLTTAPASSTLNFHRFYSKSAAPYHVKVGIPEFLSGIGGGVETHIA 58

Query: 56  KLETEIGDFQSLLVTRTXXXXXXGIPCKHRKLILKHTHKYRLGLWRPRAEAIKS 109
           KLETE+GD   LLVTRT      GIPCKHRKLILK++HKYRLGLW+PRA+AIK+
Sbjct: 59  KLETELGDLPKLLVTRTLRLKKFGIPCKHRKLILKYSHKYRLGLWKPRADAIKA 112


>AT3G05810.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           mitochondrion; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G26800.1); Has 62 Blast hits to 62 proteins in
           14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:1731259-1732321 REVERSE
           LENGTH=112
          Length = 112

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 74/113 (65%), Gaps = 5/113 (4%)

Query: 1   MAWLQRSFNRGAFPVSTQSPC----FSRFFSKSSSPYVVKVGIPEFLNGIGKGVESHVAK 56
           MAW  R        + T   C      RF S   + Y VKVGIPEFL GIG+G E+H+AK
Sbjct: 1   MAW-TRLIQSARAALGTAQSCSTLGLPRFHSSKPATYFVKVGIPEFLGGIGRGAETHIAK 59

Query: 57  LETEIGDFQSLLVTRTXXXXXXGIPCKHRKLILKHTHKYRLGLWRPRAEAIKS 109
           +ETEIGD   LLVTRT      GIPCKHRKLILK+  KYRLGLW+PRA+AIK+
Sbjct: 60  IETEIGDLHKLLVTRTLRLKKLGIPCKHRKLILKYGQKYRLGLWKPRADAIKA 112