Miyakogusa Predicted Gene

Lj6g3v1018260.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1018260.1 tr|J7F7L8|J7F7L8_PORUM Ycf22 OS=Porphyra
umbilicalis GN=ycf22 PE=4 SV=1,37.34,1e-18,seg,NULL; MCE,Mammalian
cell entry-related,CUFF.58764.1
         (382 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20320.1 | Symbols: TGD2 | trigalactosyldiacylglycerol2 | chr...   515   e-146
AT3G20320.2 | Symbols: TGD2 | trigalactosyldiacylglycerol2 | chr...   371   e-103

>AT3G20320.1 | Symbols: TGD2 | trigalactosyldiacylglycerol2 |
           chr3:7087657-7089640 REVERSE LENGTH=381
          Length = 381

 Score =  515 bits (1326), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/368 (71%), Positives = 298/368 (80%), Gaps = 3/368 (0%)

Query: 1   MVGNPLVHVSTLPSALSSSVITLRGSSLNCIPCLPLRPQSKSNRIRASS-ADAGQVEPSS 59
           M+GNP++ V +     SS +   R S  N +P LP +P+++   +RA+S +DA   +PSS
Sbjct: 1   MIGNPVIQVPSSLMPSSSMIACPRVSP-NGVPYLPPKPRTRHLVVRAASNSDAAHGQPSS 59

Query: 60  ASGSKNPLAVVLDIPRTVWRQTLRPLSDFGFGGRSIWEGGVGLFLVSGAVLFALSLAWLR 119
             G KNPL VVLD+PR +WRQTL+PLSDFGFG RSIWEGGVGLF+VSGA L ALS AWLR
Sbjct: 60  -DGGKNPLTVVLDVPRNIWRQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLR 118

Query: 120 GFQIRSKFRKYTTTFEFDQACGISTGTPVRIRGVTVGDVIRVNPSLRSIEAVVEIEDDKT 179
           GFQ+RSKFRKY T FE   A GI TGTPVRIRGVTVG +IRVNPSL++IEAV EIEDDK 
Sbjct: 119 GFQMRSKFRKYQTVFELSHASGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKI 178

Query: 180 IIPRNSLVEVNQSGLLMEXXXXXXXXXXXXXXSAGPLDQECIKEGLIVCDREKIKGQQGV 239
           IIPRNSLVEVNQSGLLME              S GPL  EC KEGLIVCDR+ IKG QGV
Sbjct: 179 IIPRNSLVEVNQSGLLMETMIDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIKGVQGV 238

Query: 240 SLDALVGIFTRIGRDVEKIGVANTYSLAERAASVIEEAKPLLTKIQAMAEDVQPLLAEVR 299
           SLD LVGIFTRIGR+VE IGVANTYSLAERAASVIEEA+PLL KIQAMAED QPLL+E R
Sbjct: 239 SLDELVGIFTRIGREVEAIGVANTYSLAERAASVIEEARPLLKKIQAMAEDAQPLLSEFR 298

Query: 300 DSGLLKEVESLTRSLTQASEDLRRVHSSVMTPENAELIQKSIYSLIFTLKNVENVSSDIL 359
           DSGLLKEVE LTRSLTQAS+DLR+V+SS+MTPEN ELIQKSIY+L++TLKNVE++SSDIL
Sbjct: 299 DSGLLKEVECLTRSLTQASDDLRKVNSSIMTPENTELIQKSIYTLVYTLKNVESISSDIL 358

Query: 360 GFTGDEAT 367
           GFTGDEAT
Sbjct: 359 GFTGDEAT 366


>AT3G20320.2 | Symbols: TGD2 | trigalactosyldiacylglycerol2 |
           chr3:7088589-7089640 REVERSE LENGTH=282
          Length = 282

 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/284 (67%), Positives = 218/284 (76%), Gaps = 3/284 (1%)

Query: 1   MVGNPLVHVSTLPSALSSSVITLRGSSLNCIPCLPLRPQSKSNRIRASS-ADAGQVEPSS 59
           M+GNP++ V +     SS +   R S  N +P LP +P+++   +RA+S +DA   +PSS
Sbjct: 1   MIGNPVIQVPSSLMPSSSMIACPRVSP-NGVPYLPPKPRTRHLVVRAASNSDAAHGQPSS 59

Query: 60  ASGSKNPLAVVLDIPRTVWRQTLRPLSDFGFGGRSIWEGGVGLFLVSGAVLFALSLAWLR 119
             G KNPL VVLD+PR +WRQTL+PLSDFGFG RSIWEGGVGLF+VSGA L ALS AWLR
Sbjct: 60  -DGGKNPLTVVLDVPRNIWRQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLR 118

Query: 120 GFQIRSKFRKYTTTFEFDQACGISTGTPVRIRGVTVGDVIRVNPSLRSIEAVVEIEDDKT 179
           GFQ+RSKFRKY T FE   A GI TGTPVRIRGVTVG +IRVNPSL++IEAV EIEDDK 
Sbjct: 119 GFQMRSKFRKYQTVFELSHASGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKI 178

Query: 180 IIPRNSLVEVNQSGLLMEXXXXXXXXXXXXXXSAGPLDQECIKEGLIVCDREKIKGQQGV 239
           IIPRNSLVEVNQSGLLME              S GPL  EC KEGLIVCDR+ IKG QGV
Sbjct: 179 IIPRNSLVEVNQSGLLMETMIDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIKGVQGV 238

Query: 240 SLDALVGIFTRIGRDVEKIGVANTYSLAERAASVIEEAKPLLTK 283
           SLD LVGIFTRIGR+VE IGVANTYSLAERAASVIEEA+PLL K
Sbjct: 239 SLDELVGIFTRIGREVEAIGVANTYSLAERAASVIEEARPLLKK 282