Miyakogusa Predicted Gene

Lj6g3v1008210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1008210.1 Non Chatacterized Hit- tr|K4AT96|K4AT96_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,42.19,0.00000000000002,zf-RING_3,NULL,CUFF.58759.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40830.3 | Symbols: RHC1A | RING-H2 finger C1A | chr2:1704364...    46   7e-06
AT2G40830.1 | Symbols: RHC1A | RING-H2 finger C1A | chr2:1704364...    46   7e-06
AT2G40830.2 | Symbols: RHC1A | RING-H2 finger C1A | chr2:1704364...    46   7e-06

>AT2G40830.3 | Symbols: RHC1A | RING-H2 finger C1A |
          chr2:17043642-17044628 FORWARD LENGTH=328
          Length = 328

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 2  SSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLDPQAPDIFDA 61
          SS  T+WC+ C++ + L G++  C YC G FV+EL+  Q                  FD 
Sbjct: 3  SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELDMAQASP---------------FDM 47

Query: 62 IHSVIGQRGSAPRIGLRDAVDSYMRRRMA 90
            S  G         L DA   +MR R+A
Sbjct: 48 FRSHRGVVERDQTFDLMDAFSVFMRNRLA 76


>AT2G40830.1 | Symbols: RHC1A | RING-H2 finger C1A |
          chr2:17043642-17044628 FORWARD LENGTH=328
          Length = 328

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 2  SSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLDPQAPDIFDA 61
          SS  T+WC+ C++ + L G++  C YC G FV+EL+  Q                  FD 
Sbjct: 3  SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELDMAQASP---------------FDM 47

Query: 62 IHSVIGQRGSAPRIGLRDAVDSYMRRRMA 90
            S  G         L DA   +MR R+A
Sbjct: 48 FRSHRGVVERDQTFDLMDAFSVFMRNRLA 76


>AT2G40830.2 | Symbols: RHC1A | RING-H2 finger C1A |
          chr2:17043642-17044628 FORWARD LENGTH=328
          Length = 328

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 2  SSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLDPQAPDIFDA 61
          SS  T+WC+ C++ + L G++  C YC G FV+EL+  Q                  FD 
Sbjct: 3  SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELDMAQASP---------------FDM 47

Query: 62 IHSVIGQRGSAPRIGLRDAVDSYMRRRMA 90
            S  G         L DA   +MR R+A
Sbjct: 48 FRSHRGVVERDQTFDLMDAFSVFMRNRLA 76