Miyakogusa Predicted Gene

Lj6g3v1008190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1008190.1 Non Chatacterized Hit- tr|C5X783|C5X783_SORBI
Putative uncharacterized protein Sb02g000870
OS=Sorghu,30,4e-19,DNA_pol_A_exo1,3'-5' exonuclease domain; SUBFAMILY
NOT NAMED,NULL; 3-5 EXONUCLEASE,NULL; 3'-5' exonu,CUFF.58760.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13870.1 | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner syn...   107   7e-24
AT4G13870.2 | Symbols: WRNEXO | Werner syndrome-like exonuclease...   105   2e-23
AT2G36110.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    75   5e-14
AT3G12410.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    67   8e-12
AT3G12430.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    63   1e-10
AT5G48350.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    59   2e-09
AT3G12460.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    59   3e-09
AT3G12470.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    56   2e-08
AT3G12440.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    51   5e-07

>AT4G13870.1 | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner
           syndrome-like exonuclease | chr4:8023563-8025542 REVERSE
           LENGTH=285
          Length = 285

 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 5/152 (3%)

Query: 56  VGLDIEWRPSFTRGV-QNPVATIQLCI-KHCCLIFQLYRAPCIPKALYKALYNPNITYTG 113
           VGLDIEWRPSF +GV    VAT+Q+C+  + C +  ++ +  IP++L   + +  +   G
Sbjct: 130 VGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHS-GIPQSLQHLIEDSTLVKVG 188

Query: 114 VKIRGDAKKLLEDYGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPKHV 173
           + I GD+ KL  DYG+ I +  D+  +A ++    G K+ GL +L E L+ +E+ KP  +
Sbjct: 189 IGIDGDSVKLFHDYGVSIKDVEDLSDLANQKI--GGDKKWGLASLTETLVCKELLKPNRI 246

Query: 174 ALSNWEAKELTCVQAHYACADAYYSYKLGKGL 205
            L NWE   L+  Q  YA  DAY S+ L K L
Sbjct: 247 RLGNWEFYPLSKQQLQYAATDAYASWHLYKDL 278


>AT4G13870.2 | Symbols: WRNEXO | Werner syndrome-like exonuclease |
           chr4:8023563-8025542 REVERSE LENGTH=288
          Length = 288

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 5/152 (3%)

Query: 56  VGLDIEWRPSFTRGV-QNPVATIQLCI-KHCCLIFQLYRAPCIPKALYKALYNPNITYTG 113
           VGLDIEWRPSF +GV    VAT+Q+C+  + C +  ++ +  IP++L   + +  +   G
Sbjct: 130 VGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHS-GIPQSLQHLIEDSTLVKVG 188

Query: 114 VKIRGDAKKLLEDYGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPKHV 173
           + I GD+ KL  DYG+ I +  D+  +A ++    G K+ GL +L E L+ +E+ KP  +
Sbjct: 189 IGIDGDSVKLFHDYGVSIKDVEDLSDLANQKI--GGDKKWGLASLTETLVCKELLKPNRI 246

Query: 174 ALSNWEAKELTCVQAHYACADAYYSYKLGKGL 205
            L NWE   L+  Q  YA  DAY S+ L K L
Sbjct: 247 RLGNWEFYPLSKQQLQYAATDAYASWHLYKVL 278


>AT2G36110.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr2:15161877-15162596
           FORWARD LENGTH=239
          Length = 239

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 84/184 (45%), Gaps = 14/184 (7%)

Query: 24  NRVIGTIVTSCPTLAASWIKSHLQASR---HHQKVVGLDIEWRPSFTRGVQNPVATIQLC 80
            R+I T+  +  T+   WI S    SR    H  VVGLD++W P    G   P   +QLC
Sbjct: 24  ERLIVTVTHTTSTIR-RWIHSIRFFSRLRSSHPLVVGLDVQWTPG---GSDPPPDILQLC 79

Query: 81  IKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLE-DYGLLIANFADIGH 139
           + + CLI QL     IP+ L   L +  IT+ GV    D  KL    + L I    DI H
Sbjct: 80  VGNRCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERFRHQLEIWRLLDIRH 139

Query: 140 MAAEEFDEKGFKRAGLKTLVENLIG-EEMDKPKHVALSNWEAKELTCVQAHYACADAYYS 198
                     F++     +VE  +G + + K K + +SNW A+ L+  Q   A  D Y  
Sbjct: 140 YLPTRLLNSSFEK-----IVEECLGYKGVRKDKEICMSNWGARSLSHDQIVQASDDVYVC 194

Query: 199 YKLG 202
            KLG
Sbjct: 195 CKLG 198


>AT3G12410.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:3946267-3946959
           REVERSE LENGTH=230
          Length = 230

 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 24/194 (12%)

Query: 31  VTSCPTLAASWIKSHLQASR--HHQKVVGLDIEWRP-----------------SFTRGVQ 71
           VT   ++ + WI++ L  +R   H  VVG+ ++W P                        
Sbjct: 31  VTWDSSVISRWIRNVLFNNRFSSHPLVVGVGVQWTPFSYYSDPRPNNYYADPPPIRYYSD 90

Query: 72  NPVATIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLE-DYGLL 130
           NP   +QLC+ + CLI QL     +P  L   L +P  T+ GV    DA KL    + L 
Sbjct: 91  NPADILQLCVGNRCLIIQLGYCDQVPNNLRSFLADPETTFVGVWNGQDAGKLARCCHQLE 150

Query: 131 IANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEE--MDKPKHVALSNWEAKELTCVQA 188
           I    DI     + +  +  +R+  + +VE  +G +  M  P+ +++S+W A +L   Q 
Sbjct: 151 IGELLDIRRYVTDSWG-RSMRRSSFEEIVEECMGYQGVMLDPE-ISMSDWTAYDLDLDQI 208

Query: 189 HYACADAYYSYKLG 202
             A  DAY  ++LG
Sbjct: 209 LQASLDAYVCHQLG 222


>AT3G12430.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:3949580-3950377
           REVERSE LENGTH=238
          Length = 238

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 31/204 (15%)

Query: 29  TIVTSCPTLAASWIKSHLQASR--HHQKVVGLDIEW------------------------ 62
            IVT  P++   WI   L  +R   H  VVG+ ++W                        
Sbjct: 28  VIVTPDPSVIGQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRYRSDSPPVRYR 87

Query: 63  --RPSFTRGVQNPVATIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDA 120
              P   R    P  T+QLC+ + C+I QL     +P+ L   L + + T+ G+    DA
Sbjct: 88  SDSPRVRRRFDPPADTLQLCVGNRCIIIQLSHCERVPQVLRNFLADRDYTFVGIWNSQDA 147

Query: 121 KKLLED-YGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIGEE-MDKPKHVALSNW 178
            KL    + L IA   D+    ++    +  KR   + +VE  +G   +   + V+ S+W
Sbjct: 148 GKLKRSKHELEIAVLLDLRKFVSDS-SGRTMKRCSFEKIVEENLGHSGVRLDRKVSRSDW 206

Query: 179 EAKELTCVQAHYACADAYYSYKLG 202
              +L  VQ   A  D Y   KL 
Sbjct: 207 RVYDLRYVQILQASIDVYACCKLA 230


>AT5G48350.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:19593566-19594165
           FORWARD LENGTH=199
          Length = 199

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 25/193 (12%)

Query: 27  IGTIVTSCPTLAASWIKSHLQASRHHQKVVGLDIEWRPSFTRGVQNPVATIQLCIKHCCL 86
           I T VT         +K+ L    + +K++GLD E R    R + N    +QLC    CL
Sbjct: 13  IKTTVTEKERDINRLVKTFLSNKNNRKKIIGLDTE-RVQKGRKL-NKTVLLQLCDGDNCL 70

Query: 87  IFQL---------YRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLEDYGLLIANFADI 137
           I QL              +P  L+  L  P  T+ G+ I     +L  ++GL   N  +I
Sbjct: 71  IVQLPDEDEDEGEGEDDNLPLPLFNFLNLPEFTFVGIGINKTMMRLESEFGLTCKNVVEI 130

Query: 138 G----HMAAEEFDEKGFKRAGLKTLVENLIGEEMDKPKHVALSNWEAKELTCVQAHYACA 193
           G    ++     D K    A + T          ++P +  L +WE   L   Q   A +
Sbjct: 131 GPATWNLTNMTTDVKFRISAIVST----------ERPSNAVLEDWEKFVLNKNQIKLAAS 180

Query: 194 DAYYSYKLGKGLV 206
           +AY+++ +G  L+
Sbjct: 181 NAYFAFGIGNILL 193


>AT3G12460.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:3954695-3955423
           REVERSE LENGTH=242
          Length = 242

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 30/196 (15%)

Query: 31  VTSCPTLAASWIKSHLQASR--HHQKVVGLDIEWRPSFTRGVQNPVA------------- 75
           VT  P++   WI      +R   H  VVG+ ++W PS       PV+             
Sbjct: 30  VTPDPSVIGQWIHDVFFHNRLSSHPLVVGVGVQWTPSGYHPASPPVSYRSDSSPDSYRSD 89

Query: 76  -------------TIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKK 122
                        T+QLC+ + C+I QL     +P+ L   L + + T+ G+    DA K
Sbjct: 90  SPPVFYSSDPPADTLQLCVGNRCIIIQLRYCERVPQVLRNFLADRDNTFVGIWNSQDAGK 149

Query: 123 LLED-YGLLIANFADIGHMAAEEFDEKGFKRAGLKTLVENLIG-EEMDKPKHVALSNWEA 180
           L    + L IA   D+    ++    +      L+ +VE  +G   +   + V++S+W  
Sbjct: 150 LERSRHQLEIAELMDLREFVSDSSGRRSMYNYSLEKIVEENLGYPGVRLDREVSMSDWRV 209

Query: 181 KELTCVQAHYACADAY 196
             L+  Q   A  D Y
Sbjct: 210 YNLSYDQILQASIDVY 225


>AT3G12470.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:3956123-3956785
           REVERSE LENGTH=220
          Length = 220

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 17/184 (9%)

Query: 30  IVTSCPTLAA--SWIKSHLQASRHHQK---VVGLDIEWRPSFTRGVQNPVATIQLCIKHC 84
           IVT  PT +    WI+S    +R+H     VVG+ ++WRP  +     P  T+QLC+   
Sbjct: 27  IVTVTPTASVIRRWIRSVRSYNRNHSVHPLVVGIGVQWRPDSS-DPDPPPKTLQLCVGSR 85

Query: 85  CLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLE-DYGLLIANFADIGHMAAE 143
           CLI QL     +PK L   L +P  T+ GV    D KKL +  + + I    DI      
Sbjct: 86  CLIIQLGYNYGLPKVLRTFLADPKTTFVGVWNGQDQKKLEKCRHRVEIGKLLDIRMFVR- 144

Query: 144 EFDEKGFKR--AGLKTLVENLIGE---EMDKPKHVALSNWEAKELTCVQAHYACADAYYS 198
             D +G +      + +V+  +G     +D    + +S+W    L   Q   A  ++Y  
Sbjct: 145 --DSRGARMCFCSFEQIVKERLGRVGVRLDPA--ICMSDWGVYNLNHYQVLQASIESYVC 200

Query: 199 YKLG 202
           +KL 
Sbjct: 201 FKLA 204


>AT3G12440.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:3951199-3952260
           REVERSE LENGTH=353
          Length = 353

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 73  PVATIQLCIKHCCLIFQLYRAPCIPKALYKALYNPNITYTGVKIRGDAKKLLED-YGLLI 131
           P  T+QLC+ + C+I QL+    +P  L + L + N T+ G     DA KL    + L I
Sbjct: 215 PANTLQLCVGNRCIIIQLFYCNRVPHVLRRFLGDRNHTFVGFWNSQDAGKLKRSRHRLEI 274

Query: 132 ANFADIGHMAAEEFDEKGFKRAGLKTLVENLIG-EEMDKPKHVALSNWEAKELTCVQAHY 190
           A   D+ +   +    +G K    + +V   +G   +   K + +S+W   +L+  Q   
Sbjct: 275 AELLDLRNHVVDS-RGRGLKGRSFEVVVGECLGYRGVRLEKAIGMSDWSVYDLSYDQILQ 333

Query: 191 ACADAYYSYKLG 202
           A  D Y   KLG
Sbjct: 334 ASIDVYVCSKLG 345