Miyakogusa Predicted Gene
- Lj6g3v0960480.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0960480.1 tr|C1MGZ5|C1MGZ5_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_4999,32.84,2e-16,ZF_RING_1,Zinc finger, RING-type,
conserved site; zf-RING_2,Zinc finger, RING-type; seg,NULL; no
des,CUFF.58790.1
(258 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12310.1 | Symbols: | RING/U-box superfamily protein | chr5:... 214 5e-56
AT5G19430.1 | Symbols: | RING/U-box superfamily protein | chr5:... 207 8e-54
AT5G19430.2 | Symbols: | RING/U-box superfamily protein | chr5:... 199 2e-51
>AT5G12310.1 | Symbols: | RING/U-box superfamily protein |
chr5:3980485-3982093 REVERSE LENGTH=254
Length = 254
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 130/199 (65%), Gaps = 7/199 (3%)
Query: 1 MTSSLVQIQDEEQVVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQ 60
M+SS+ + +E+QV D L +D EK + + ++ FGNHGG CAICLD I LQ
Sbjct: 1 MSSSIQIVVEEKQV----DVLPLQDQD---EKKTPQVFNELSFGNHGGCCAICLDTIPLQ 53
Query: 61 ETALVKGCEHAYCVTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIEDYMFEESVCL 120
ETA+VKGCEHAYCVTCILRWA+Y K TCPQCK PF+FLNVHR+LDGS+ED+MFEESVCL
Sbjct: 54 ETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCL 113
Query: 121 LLRAKWFKPLTVEDHVVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSSSFRIGNRRWG 180
LLRA WF+PL + V + SS R+GNRRWG
Sbjct: 114 LLRASWFQPLEAVERVSDNDNFNYDFDIPPEYEEEDEDDDDLDEFYMQGSSLRLGNRRWG 173
Query: 181 DNGYVRAGRQEARPVHRSN 199
DNG+VRAGRQEARPV N
Sbjct: 174 DNGFVRAGRQEARPVQHKN 192
>AT5G19430.1 | Symbols: | RING/U-box superfamily protein |
chr5:6553998-6555616 FORWARD LENGTH=255
Length = 255
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 140/260 (53%), Gaps = 10/260 (3%)
Query: 3 SSLVQIQDEEQVVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQET 62
SS+ +I E+QV+ DL++++ +K EE H+ FGNHGG CAICL +I LQET
Sbjct: 2 SSVTEIVSEQQVI--DGIQDLALQNQ-DKKKIQEEIHEPSFGNHGGCCAICLSEIPLQET 58
Query: 63 ALVKGCEHAYCVTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIEDYMFEESVCLLL 122
A+VKGCEH YCVTCILRWA+ TCPQCK+PF+FL+VHR+LDGSIED++FEESVCLLL
Sbjct: 59 AMVKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLL 118
Query: 123 RAKWFKPLTVEDHVVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSSSFRIGNRRWGDN 182
RA WF PL V + SS RIGNRRWG N
Sbjct: 119 RASWFVPLDVVEQASYSHGYHDDFDIPYDYEDEDDDLDEFYLH---GSSLRIGNRRWGGN 175
Query: 183 GYVRAGRQEARPVHRSNTDNXXXXXXXXXXRQPXXXXXXXXXXTTGXXXXXX----XXXX 238
G+VR+GRQEARPV R + TTG
Sbjct: 176 GFVRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANK 235
Query: 239 XXXXXXXXXHQQHLIRLGRK 258
H+ HL+RLGRK
Sbjct: 236 AAEVTAAAKHEAHLVRLGRK 255
>AT5G19430.2 | Symbols: | RING/U-box superfamily protein |
chr5:6554213-6555616 FORWARD LENGTH=240
Length = 240
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 129/249 (51%), Gaps = 15/249 (6%)
Query: 14 VVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQETALVKGCEHAYC 73
+ L H+ D +K EE H+ FGNHGG CAICL +I LQETA+VKGCEH YC
Sbjct: 3 LALLHNIRD--------KKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYC 54
Query: 74 VTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIEDYMFEESVCLLLRAKWFKPLTVE 133
VTCILRWA+ TCPQCK+PF+FL+VHR+LDGSIED++FEESVCLLLRA WF PL V
Sbjct: 55 VTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVV 114
Query: 134 DHVVVHXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSSSFRIGNRRWGDNGYVRAGRQEAR 193
+ SS RIGNRRWG NG+VR+GRQEAR
Sbjct: 115 EQASYSHGYHDDFDIPYDYEDEDDDLDEFYLH---GSSLRIGNRRWGGNGFVRSGRQEAR 171
Query: 194 PVHRSNTDNXXXXXXXXXXRQPXXXXXXXXXXTTGXXXXXX----XXXXXXXXXXXXXHQ 249
PV R + TTG H+
Sbjct: 172 PVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHE 231
Query: 250 QHLIRLGRK 258
HL+RLGRK
Sbjct: 232 AHLVRLGRK 240