Miyakogusa Predicted Gene

Lj6g3v0935900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0935900.1 Non Chatacterized Hit- tr|B5FZC9|B5FZC9_TAEGU
Putative ubiquitously-expressed transcript variant 3
O,41.22,2e-19,UXT,NULL; NUT2 AND UXT,NULL; coiled-coil,NULL;
Prefoldin,Prefoldin; Prefoldin,Prefoldin subunit; TIG,CUFF.58683.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26660.1 | Symbols:  | Prefoldin chaperone subunit family pro...   176   6e-45
AT1G26660.2 | Symbols:  | Prefoldin chaperone subunit family pro...   145   1e-35

>AT1G26660.1 | Symbols:  | Prefoldin chaperone subunit family
           protein | chr1:9212298-9213765 FORWARD LENGTH=152
          Length = 152

 Score =  176 bits (446), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 107/141 (75%)

Query: 5   RHEKVQKFEEFVDKRLKPDILHAIAQRDKVFEQQKTFADLRKNIENLEKNSVTSLRTLVN 64
           R + +Q  EE +DK LK  ++HA A RDK+FE+QKT +DLRKN+E LEKN V SL+T VN
Sbjct: 5   RQKDLQLLEEIIDKGLKQKLVHATASRDKIFEEQKTLSDLRKNLETLEKNGVNSLKTRVN 64

Query: 65  LGSEVYLQAEVPNTEHIFVDVGLGFHVEFTWSEALKYIEKREEKIARQIEEYTQLIASIK 124
           LGSEVY+QAEVP+T HIF+DVGLGF+VEFT  EAL YI +REE+  +Q+EEYT +I  IK
Sbjct: 65  LGSEVYMQAEVPDTRHIFMDVGLGFYVEFTRQEALDYIAQREERTQKQLEEYTGVITQIK 124

Query: 125 AQIKLVCEGIRELLEFPAEKP 145
            +IKL    I+++L  P E P
Sbjct: 125 GRIKLAHYQIQQILNLPEENP 145


>AT1G26660.2 | Symbols:  | Prefoldin chaperone subunit family
           protein | chr1:9212298-9213765 FORWARD LENGTH=177
          Length = 177

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 104/166 (62%), Gaps = 25/166 (15%)

Query: 5   RHEKVQKFEEFVDKRLKPDILHAIAQRDK------------------------VFEQQKT 40
           R + +Q  EE +DK LK  ++HA A R +                        ++ +  +
Sbjct: 5   RQKDLQLLEEIIDKGLKQKLVHATASRFRFIVVSAFVGFAGTRSLKNKKHCILLYREDSS 64

Query: 41  FA-DLRKNIENLEKNSVTSLRTLVNLGSEVYLQAEVPNTEHIFVDVGLGFHVEFTWSEAL 99
           F+ DLRKN+E LEKN V SL+T VNLGSEVY+QAEVP+T HIF+DVGLGF+VEFT  EAL
Sbjct: 65  FSSDLRKNLETLEKNGVNSLKTRVNLGSEVYMQAEVPDTRHIFMDVGLGFYVEFTRQEAL 124

Query: 100 KYIEKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLEFPAEKP 145
            YI +REE+  +Q+EEYT +I  IK +IKL    I+++L  P E P
Sbjct: 125 DYIAQREERTQKQLEEYTGVITQIKGRIKLAHYQIQQILNLPEENP 170