Miyakogusa Predicted Gene
- Lj6g3v0933510.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0933510.1 tr|G7K6H0|G7K6H0_MEDTR E3 ubiquitin-protein
ligase synoviolin OS=Medicago truncatula
GN=MTR_5g007710,81.41,0,RING/U-box,NULL; seg,NULL;
SYNOVIOLIN-RELATED,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; ,CUFF.58689.1
(549 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16090.1 | Symbols: | RING/U-box superfamily protein | chr3:... 670 0.0
AT1G65040.2 | Symbols: | RING/U-box superfamily protein | chr1:... 646 0.0
AT1G65040.3 | Symbols: | RING/U-box superfamily protein | chr1:... 467 e-132
AT1G65040.1 | Symbols: | RING/U-box superfamily protein | chr1:... 370 e-102
AT4G25230.2 | Symbols: RIN2 | RPM1 interacting protein 2 | chr4:... 117 3e-26
AT4G25230.1 | Symbols: RIN2 | RPM1 interacting protein 2 | chr4:... 117 3e-26
AT5G51450.1 | Symbols: RIN3 | RPM1 interacting protein 3 | chr5:... 96 8e-20
AT5G51450.2 | Symbols: RIN3 | RPM1 interacting protein 3 | chr5:... 96 9e-20
AT5G01960.1 | Symbols: | RING/U-box superfamily protein | chr5:... 69 1e-11
AT2G44581.1 | Symbols: | RING/U-box superfamily protein | chr2:... 58 1e-08
AT2G44578.1 | Symbols: | RING/U-box superfamily protein | chr2:... 58 2e-08
AT3G30460.1 | Symbols: | RING/U-box superfamily protein | chr3:... 54 3e-07
AT5G42940.1 | Symbols: | RING/U-box superfamily protein | chr5:... 54 3e-07
AT1G17970.1 | Symbols: | RING/U-box superfamily protein | chr1:... 54 4e-07
AT1G73760.1 | Symbols: | RING/U-box superfamily protein | chr1:... 53 4e-07
AT4G24015.1 | Symbols: | RING/U-box superfamily protein | chr4:... 53 5e-07
AT3G02340.1 | Symbols: | RING/U-box superfamily protein | chr3:... 53 6e-07
AT5G15820.1 | Symbols: | RING/U-box superfamily protein | chr5:... 53 6e-07
AT5G02750.1 | Symbols: | RING/U-box superfamily protein | chr5:... 52 1e-06
AT4G40070.1 | Symbols: | RING/U-box superfamily protein | chr4:... 52 1e-06
AT4G31450.1 | Symbols: | RING/U-box superfamily protein | chr4:... 51 2e-06
AT3G05200.1 | Symbols: ATL6 | RING/U-box superfamily protein | c... 51 2e-06
AT3G14320.1 | Symbols: | Zinc finger, C3HC4 type (RING finger) ... 49 8e-06
AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4:... 49 9e-06
AT3G56580.3 | Symbols: | RING/U-box superfamily protein | chr3:... 49 1e-05
AT3G56580.1 | Symbols: | RING/U-box superfamily protein | chr3:... 49 1e-05
AT3G56580.2 | Symbols: | RING/U-box superfamily protein | chr3:... 49 1e-05
>AT3G16090.1 | Symbols: | RING/U-box superfamily protein |
chr3:5456513-5458694 FORWARD LENGTH=492
Length = 492
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/528 (64%), Positives = 402/528 (76%), Gaps = 43/528 (8%)
Query: 1 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQL 60
M+RL+TYAGLS +ATLA+ YHAF+SRGQFYPA VYLSTSKISLVLLLNM LV+M +LW L
Sbjct: 1 MIRLRTYAGLSFMATLAVIYHAFSSRGQFYPATVYLSTSKISLVLLLNMCLVLMLSLWHL 60
Query: 61 TKKLFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA 120
K +FLGSLREAEVERLNEQ+WRE+MEILFAITIFRQDFS FL +V LLLIKALHWLA
Sbjct: 61 VKFVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLA 120
Query: 121 QKRVEYIETTPSVTWLSHVRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFSFEYM 180
QKRVEYIETTPSV+ LSH RIVSFMGFLLL+DS+F+YSS++HLI++ QASVSLFFSFEYM
Sbjct: 121 QKRVEYIETTPSVSKLSHFRIVSFMGFLLLVDSLFMYSSIRHLIQSRQASVSLFFSFEYM 180
Query: 181 ILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYG 240
ILATTTV+IFVKY+FYV+DMLM+GQWEKKPV+TFYLELIRDLLHLSMY+CFFF+IF+NYG
Sbjct: 181 ILATTTVAIFVKYVFYVTDMLMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYG 240
Query: 241 IPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNARDATCIICREEMT 300
+PLHL+RELYETFRNF++R++DY+RYRKITSNMNDRFPDATPEEL A DATCIICREEMT
Sbjct: 241 VPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMT 300
Query: 301 TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTGT 360
AKKLICGHLFHVHCLRSWLERQ TCPTCRALVVPPEN T+ A GQ+ G +QGT +
Sbjct: 301 NAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENATSAAPGQR-ELHQGSQQGTSS 359
Query: 361 AGSTAQN-EAGSGMATDSLSRHEARLQXXXXXXSIYEKSYVYPSASSSVCSPGHAFYTPS 419
+G+ + +G++ +SLSRH ARLQ S+Y KS VYPSA++ S G P
Sbjct: 360 SGNQGSEISSSAGVSNNSLSRHHARLQAAASAASVYGKSMVYPSANTVAWSSG----VPG 415
Query: 420 STGFNGEQASSEQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFAAPVNYGEAFGNDPNIP 479
+ EQ S+E Q LP PV A+ N+
Sbjct: 416 T-----EQVSTEPDQT---------------------LPQHNL--PVENSHAYA---NMS 444
Query: 480 SSQLEAHRKFLRWQIEVLEKQLRNL----PETKADDRSVDDGTSSSDS 523
++LE RK L +E+L +L L PE+ + + G S +D+
Sbjct: 445 ETKLEEMRKSLETHLEILRNRLHFLETRKPESAGEPE--NKGKSVADA 490
>AT1G65040.2 | Symbols: | RING/U-box superfamily protein |
chr1:24160105-24163365 REVERSE LENGTH=460
Length = 460
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/439 (69%), Positives = 366/439 (83%), Gaps = 11/439 (2%)
Query: 1 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQL 60
M++LK YAGLS +ATL + YHAF+SRGQFYPA VYLSTSKI+LV+LLNMGLV+M +LW L
Sbjct: 1 MIQLKVYAGLSTLATLVVIYHAFSSRGQFYPATVYLSTSKINLVVLLNMGLVLMLSLWNL 60
Query: 61 TKKLFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA 120
K +FLGSLREAEVERLNEQ+WRE+MEILFAITIFRQDFSV F+++V LLLIK LHW+A
Sbjct: 61 VKIVFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSVGFISLVVTLLLIKGLHWMA 120
Query: 121 QKRVEYIETTPSVTWLSHVRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFSFEYM 180
QKRVEYIETTPSVT LSHVRIVSFM FLL+LD + YSS++ LI++ +AS+S+FF+FEYM
Sbjct: 121 QKRVEYIETTPSVTLLSHVRIVSFMVFLLILDCLLTYSSIQQLIQSRKASMSVFFTFEYM 180
Query: 181 ILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYG 240
ILATTTVSI VKY FYV+DML EGQWE KPV+TFYLEL+RDLLHLSMYLCFF +IF+NYG
Sbjct: 181 ILATTTVSIIVKYAFYVTDMLKEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLMIFMNYG 240
Query: 241 IPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNARDATCIICREEMT 300
+PLHLIRELYETFRNFK+R+ DY+RYRKITSNMNDRFPDATPEEL++ DATCIICREEMT
Sbjct: 241 LPLHLIRELYETFRNFKIRVTDYLRYRKITSNMNDRFPDATPEELSSNDATCIICREEMT 300
Query: 301 TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTGT 360
+AKKL+CGHLFHVHCLRSWLERQ+TCPTCRALVVP EN T+ A G +G + +QGTGT
Sbjct: 301 SAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTGT 360
Query: 361 AGSTAQNEAGSGMATDSLSRHEARLQXXXXXXSIYEKSYVYPSASSS-VCSPGHAFYTPS 419
+ S Q + S A++++SRHEAR Q SIY +S VYPS++++ V S G++ +
Sbjct: 361 SSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGNSLLPQT 420
Query: 420 STGFNGEQASSEQAQKQFL 438
+AQ++FL
Sbjct: 421 EV----------EAQRRFL 429
>AT1G65040.3 | Symbols: | RING/U-box superfamily protein |
chr1:24160105-24163365 REVERSE LENGTH=389
Length = 389
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 214/302 (70%), Positives = 256/302 (84%), Gaps = 1/302 (0%)
Query: 115 ALHWLAQKRVEYIETTPSVTWLSHVRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLF 174
LHW+AQKRVEYIETTPSVT LSHVRIVSFM FLL+LD + YSS++ LI++ +AS+S+F
Sbjct: 44 GLHWMAQKRVEYIETTPSVTLLSHVRIVSFMVFLLILDCLLTYSSIQQLIQSRKASMSVF 103
Query: 175 FSFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFL 234
F+FEYMILATTTVSI VKY FYV+DML EGQWE KPV+TFYLEL+RDLLHLSMYLCFF +
Sbjct: 104 FTFEYMILATTTVSIIVKYAFYVTDMLKEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLM 163
Query: 235 IFVNYGIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNARDATCII 294
IF+NYG+PLHLIRELYETFRNFK+R+ DY+RYRKITSNMNDRFPDATPEEL++ DATCII
Sbjct: 164 IFMNYGLPLHLIRELYETFRNFKIRVTDYLRYRKITSNMNDRFPDATPEELSSNDATCII 223
Query: 295 CREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGH 354
CREEMT+AKKL+CGHLFHVHCLRSWLERQ+TCPTCRALVVP EN T+ A G +G +
Sbjct: 224 CREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENATSTASGNRGPHQESL 283
Query: 355 RQGTGTAGSTAQNEAGSGMATDSLSRHEARLQXXXXXXSIYEKSYVYPSASSS-VCSPGH 413
+QGTGT+ S Q + S A++++SRHEAR Q SIY +S VYPS++++ V S G+
Sbjct: 284 QQGTGTSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGN 343
Query: 414 AF 415
+
Sbjct: 344 SL 345
>AT1G65040.1 | Symbols: | RING/U-box superfamily protein |
chr1:24160105-24161992 REVERSE LENGTH=281
Length = 281
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/260 (66%), Positives = 207/260 (79%), Gaps = 11/260 (4%)
Query: 180 MILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNY 239
MILATTTVSI VKY FYV+DML EGQWE KPV+TFYLEL+RDLLHLSMYLCFF +IF+NY
Sbjct: 1 MILATTTVSIIVKYAFYVTDMLKEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLMIFMNY 60
Query: 240 GIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNARDATCIICREEM 299
G+PLHLIRELYETFRNFK+R+ DY+RYRKITSNMNDRFPDATPEEL++ DATCIICREEM
Sbjct: 61 GLPLHLIRELYETFRNFKIRVTDYLRYRKITSNMNDRFPDATPEELSSNDATCIICREEM 120
Query: 300 TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTG 359
T+AKKL+CGHLFHVHCLRSWLERQ+TCPTCRALVVP EN T+ A G +G + +QGTG
Sbjct: 121 TSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTG 180
Query: 360 TAGSTAQNEAGSGMATDSLSRHEARLQXXXXXXSIYEKSYVYPSASSS-VCSPGHAFYTP 418
T+ S Q + S A++++SRHEAR Q SIY +S VYPS++++ V S G++
Sbjct: 181 TSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGNSLLPQ 240
Query: 419 SSTGFNGEQASSEQAQKQFL 438
+ +AQ++FL
Sbjct: 241 TEV----------EAQRRFL 250
>AT4G25230.2 | Symbols: RIN2 | RPM1 interacting protein 2 |
chr4:12924446-12928671 FORWARD LENGTH=578
Length = 578
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 154/344 (44%), Gaps = 44/344 (12%)
Query: 25 SRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQLTKKLFLGSLREAEVERLNEQSWRE 84
S G A+ L S ++ LL N L + L K LF G L + E ++L E+
Sbjct: 42 SLGDSEHALELLLGSYFTIALLTNFVLNVYILLVLSLKTLFFGDLYDVETKKLVERLANY 101
Query: 85 V------MEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVTWLSH 138
+ + ++ TIF+ V + +T L +K LA+ R+E + +PS T ++
Sbjct: 102 IIYKGTFLPLVIPPTIFQ---GVLWTVWLTVLCTLKMFQALARDRLERLNASPSSTPWTY 158
Query: 139 VRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFSFEYMILATTTVSIFVKYIFYVS 198
R+ S + +L +D ++ S+ T ++V L FE +A T+ + + F +
Sbjct: 159 FRVYSVLFLVLSVDMFWIKLSLMT-YNTIGSAVYLLLLFEPCSIAFETLQALLIHGFQLL 217
Query: 199 DMLME---------------------GQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFV 237
DM + E K + L D+ L M L + I+
Sbjct: 218 DMWINHLAVKNSDCQRSKFIDSMTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWW 277
Query: 238 NYGIPLHLIRELYETFRNFKV-------RIADYIRYRKITSNMNDRFPDATPEELNARDA 290
+GI HL+ + F N + RI YI+ R ++ PDAT EEL A D
Sbjct: 278 LHGIAFHLVDAVL--FLNIRALLSAILKRIKGYIKLRIALGALHAALPDATSEELRAYDD 335
Query: 291 TCIICREEMTTAKKLICGHLFHVHCLRSWLERQ----HTCPTCR 330
C ICRE M AK+L C HLFH+ CLRSWL++ ++CPTCR
Sbjct: 336 ECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>AT4G25230.1 | Symbols: RIN2 | RPM1 interacting protein 2 |
chr4:12924446-12928671 FORWARD LENGTH=578
Length = 578
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 154/344 (44%), Gaps = 44/344 (12%)
Query: 25 SRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQLTKKLFLGSLREAEVERLNEQSWRE 84
S G A+ L S ++ LL N L + L K LF G L + E ++L E+
Sbjct: 42 SLGDSEHALELLLGSYFTIALLTNFVLNVYILLVLSLKTLFFGDLYDVETKKLVERLANY 101
Query: 85 V------MEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVTWLSH 138
+ + ++ TIF+ V + +T L +K LA+ R+E + +PS T ++
Sbjct: 102 IIYKGTFLPLVIPPTIFQ---GVLWTVWLTVLCTLKMFQALARDRLERLNASPSSTPWTY 158
Query: 139 VRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFSFEYMILATTTVSIFVKYIFYVS 198
R+ S + +L +D ++ S+ T ++V L FE +A T+ + + F +
Sbjct: 159 FRVYSVLFLVLSVDMFWIKLSLMT-YNTIGSAVYLLLLFEPCSIAFETLQALLIHGFQLL 217
Query: 199 DMLME---------------------GQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFV 237
DM + E K + L D+ L M L + I+
Sbjct: 218 DMWINHLAVKNSDCQRSKFIDSMTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWW 277
Query: 238 NYGIPLHLIRELYETFRNFKV-------RIADYIRYRKITSNMNDRFPDATPEELNARDA 290
+GI HL+ + F N + RI YI+ R ++ PDAT EEL A D
Sbjct: 278 LHGIAFHLVDAVL--FLNIRALLSAILKRIKGYIKLRIALGALHAALPDATSEELRAYDD 335
Query: 291 TCIICREEMTTAKKLICGHLFHVHCLRSWLERQ----HTCPTCR 330
C ICRE M AK+L C HLFH+ CLRSWL++ ++CPTCR
Sbjct: 336 ECAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>AT5G51450.1 | Symbols: RIN3 | RPM1 interacting protein 3 |
chr5:20893164-20897223 FORWARD LENGTH=577
Length = 577
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 147/341 (43%), Gaps = 38/341 (11%)
Query: 25 SRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQLTKKLFLGSLREAEVERLNEQSWRE 84
S G + L +S ++ LL + L I L K LF G L E +L E+
Sbjct: 42 SLGNSENTLELLLSSHTTIALLASFVLNIYILLVLSLKTLFFGDLYAIETRKLVERLANY 101
Query: 85 VM--EILFAITIFRQDF-SVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVTWLSHVRI 141
++ + R F V + +T L +K LA+ R++ + +PS T ++ R+
Sbjct: 102 IIYKGTFLPFVVPRTVFQGVLWTIWLTVLCTLKMFQALARDRLDRLNASPSSTPWTYFRV 161
Query: 142 VSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFSFEYMILATTTVSIFVKYIFYVSDML 201
S + +L D ++ S+ + T +SV L FE +A T+ + + F + DM
Sbjct: 162 YSALFMVLSTDLCWIKLSLM-IYNTVGSSVYLLLLFEPCGIAFETLQALLIHGFQLLDMW 220
Query: 202 ME---------------------GQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYG 240
+ E K + L D+ L M L + I+ +G
Sbjct: 221 INHLAVKNSDCQRSKFYDSMTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWWLHG 280
Query: 241 IPLHLIRELYETFRNFKV-------RIADYIRYRKITSNMNDRFPDATPEELNARDATCI 293
+ HL+ + F N + RI YI+ R ++ DAT EEL D C
Sbjct: 281 MAFHLVDAVL--FLNIRALLSSILKRIKGYIKLRVALGALHAALLDATSEELRDYDDECA 338
Query: 294 ICREEMTTAKKLICGHLFHVHCLRSWLERQ----HTCPTCR 330
ICRE M AK+L C HLFH+ CLRSWL++ ++CPTCR
Sbjct: 339 ICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>AT5G51450.2 | Symbols: RIN3 | RPM1 interacting protein 3 |
chr5:20893164-20897223 FORWARD LENGTH=595
Length = 595
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 144/330 (43%), Gaps = 38/330 (11%)
Query: 36 LSTSKISLVLLLNMGLVIMCTLWQLTKKLFLGSLREAEVERLNEQSWREVM--EILFAIT 93
L +S ++ LL + L I L K LF G L E +L E+ ++
Sbjct: 53 LLSSHTTIALLASFVLNIYILLVLSLKTLFFGDLYAIETRKLVERLANYIIYKGTFLPFV 112
Query: 94 IFRQDF-SVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVTWLSHVRIVSFMGFLLLLD 152
+ R F V + +T L +K LA+ R++ + +PS T ++ R+ S + +L D
Sbjct: 113 VPRTVFQGVLWTIWLTVLCTLKMFQALARDRLDRLNASPSSTPWTYFRVYSALFMVLSTD 172
Query: 153 SIFLYSSMKHLIETWQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLME--------- 203
++ S+ + T +SV L FE +A T+ + + F + DM +
Sbjct: 173 LCWIKLSLM-IYNTVGSSVYLLLLFEPCGIAFETLQALLIHGFQLLDMWINHLAVKNSDC 231
Query: 204 ------------GQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYGIPLHLIRELYE 251
E K + L D+ L M L + I+ +G+ HL+ +
Sbjct: 232 QRSKFYDSMTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWWLHGMAFHLVDAVL- 290
Query: 252 TFRNFKV-------RIADYIRYRKITSNMNDRFPDATPEELNARDATCIICREEMTTAKK 304
F N + RI YI+ R ++ DAT EEL D C ICRE M AK+
Sbjct: 291 -FLNIRALLSSILKRIKGYIKLRVALGALHAALLDATSEELRDYDDECAICREPMAKAKR 349
Query: 305 LICGHLFHVHCLRSWLERQ----HTCPTCR 330
L C HLFH+ CLRSWL++ ++CPTCR
Sbjct: 350 LHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>AT5G01960.1 | Symbols: | RING/U-box superfamily protein |
chr5:370811-372775 FORWARD LENGTH=426
Length = 426
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 214 FYLELIRDLLHLSMYLCFFFLIFVNYG-IPLHLIRELYETFRNFKV--RIADYIRYRKIT 270
+++ L R LL ++ FF + +YG + L+ LY TF+ V ++ + K
Sbjct: 285 YFMLLYRSLLPTPVWYRFF--LNKDYGSLFSSLMTGLYLTFKLTSVVEKVQSFFTALKAL 342
Query: 271 SNMNDRFPD-ATPEELNARDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTC 329
S + AT E++NA C IC+E+M T L C H+F C+ W ER+ TCP C
Sbjct: 343 SRKEVHYGSYATTEQVNAAGDLCAICQEKMHTPILLRCKHMFCEDCVSEWFERERTCPLC 402
Query: 330 RALVVPPE 337
RALV P +
Sbjct: 403 RALVKPAD 410
>AT2G44581.1 | Symbols: | RING/U-box superfamily protein |
chr2:18397996-18398433 REVERSE LENGTH=145
Length = 145
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 265 RYRKITSNMNDRFPDATPEELNARDATCIICREEMTTAKKL----ICGHLFHVHCLRSWL 320
RYR T + R+ T EE ++ C IC E T +K+ C H FHV C+ WL
Sbjct: 44 RYRTFTVHHRRRWRKTTAEEKHS-SPYCTICLENATEGEKMRRIAACSHCFHVDCIDPWL 102
Query: 321 ERQHTCPTCRALV--VPPEN 338
E++ CP CRA + VPP N
Sbjct: 103 EKKSMCPLCRAEIPPVPPGN 122
>AT2G44578.1 | Symbols: | RING/U-box superfamily protein |
chr2:18400864-18401301 REVERSE LENGTH=145
Length = 145
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 265 RYRKITSNMNDRFPDATPEELNARDATCIICREEMTTAKKL----ICGHLFHVHCLRSWL 320
RYR T R+ EE ++ C IC E+ +K+ C H FHV C+ WL
Sbjct: 44 RYRTFTVQHRRRWRKTAAEEKHS-SPYCTICLEDAAEGEKMRRITACSHCFHVDCIDPWL 102
Query: 321 ERQHTCPTCRALV--VPPEN 338
++ TCP CRA + VPP N
Sbjct: 103 MKKSTCPLCRAEIPPVPPGN 122
>AT3G30460.1 | Symbols: | RING/U-box superfamily protein |
chr3:12104433-12104876 FORWARD LENGTH=147
Length = 147
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 272 NMNDRFP--DATPEELNARD-ATCIICREEMTTAKKLI---CGHLFHVHCLRSWLERQHT 325
N + P + T EE+ R C ICREE+ ++L C H +H C+ +WL ++T
Sbjct: 74 NAGEELPVVEFTAEEMMERGLVVCAICREELAANERLSELPCRHYYHKECISNWLSNRNT 133
Query: 326 CPTCRALVVPPENG 339
CP CR V P +G
Sbjct: 134 CPLCRHNVELPNHG 147
>AT5G42940.1 | Symbols: | RING/U-box superfamily protein |
chr5:17216649-17219171 REVERSE LENGTH=691
Length = 691
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 15/75 (20%)
Query: 260 IADYIRYRKITSNMNDRFP-DATPEELNARDATCIICREEMTTAKK---LICGHLFHVHC 315
I++ ++ RK SN + P DA P C +C+EE T + L CGH FH C
Sbjct: 615 ISNRLKQRKYKSNT--KSPQDAEP---------CCVCQEEYTEGEDMGTLECGHEFHSQC 663
Query: 316 LRSWLERQHTCPTCR 330
++ WL++++ CP C+
Sbjct: 664 IKEWLKQKNLCPICK 678
>AT1G17970.1 | Symbols: | RING/U-box superfamily protein |
chr1:6185032-6187202 FORWARD LENGTH=368
Length = 368
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 289 DATCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCR 330
D C IC++E + L CGH FHVHC++ WL R++ CP C+
Sbjct: 317 DRKCSICQDEYEREDEVGELNCGHSFHVHCVKQWLSRKNACPVCK 361
>AT1G73760.1 | Symbols: | RING/U-box superfamily protein |
chr1:27739366-27741161 REVERSE LENGTH=367
Length = 367
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 289 DATCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALV 333
D CIIC++E + L CGH FH+ C+ WL R+++CP C+ +
Sbjct: 316 DRKCIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPVCKTMA 363
>AT4G24015.1 | Symbols: | RING/U-box superfamily protein |
chr4:12469887-12471197 REVERSE LENGTH=174
Length = 174
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 283 EELNARDATCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338
EEL RD+ C +C E ++L+ C H+FH+ C+ WL +TCP CR+ V
Sbjct: 96 EELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISST 155
Query: 339 GTTVAGGQQGSQS 351
T+V S
Sbjct: 156 KTSVDDDNDHPDS 168
>AT3G02340.1 | Symbols: | RING/U-box superfamily protein |
chr3:477032-478261 FORWARD LENGTH=409
Length = 409
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 283 EELNARDATCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCR 330
EEL+ + C +C++EM +K L C H +H C+ WL ++TCP CR
Sbjct: 326 EELDKGNNVCAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCR 376
>AT5G15820.1 | Symbols: | RING/U-box superfamily protein |
chr5:5161787-5162833 FORWARD LENGTH=348
Length = 348
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 275 DRFPDA--TPEELNARDATCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPTC 329
D PD T EEL++ C IC++E+ K+L C H +H C+ WL ++TCP C
Sbjct: 272 DGLPDVELTIEELSSVSIVCAICKDEVVFKEKVKRLPCKHYYHGECIIPWLGIRNTCPVC 331
Query: 330 R 330
R
Sbjct: 332 R 332
>AT5G02750.1 | Symbols: | RING/U-box superfamily protein |
chr5:620101-620952 FORWARD LENGTH=283
Length = 283
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 286 NARDATCIICREEMTTAKKLI---CGHLFHVHCLRSWLERQHTCPTCR 330
NA + C+IC+EEM+ + + C H FH C+ WL +++TCP CR
Sbjct: 208 NAGEVECVICKEEMSEGRDVCEMPCQHFFHWKCILPWLSKKNTCPFCR 255
>AT4G40070.1 | Symbols: | RING/U-box superfamily protein |
chr4:18576533-18577504 FORWARD LENGTH=323
Length = 323
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 284 ELNARDATCIICREEMTTAKKL----ICGHLFHVHCLRSWLERQHTCPTCRALVVPPENG 339
++ ++D C IC E+ + + IC HLFH+ C+ +WL TCP CR+ +
Sbjct: 116 KIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL------ 169
Query: 340 TTVAGGQQGSQSDG 353
T + G + DG
Sbjct: 170 -TAKSNKPGDEDDG 182
>AT4G31450.1 | Symbols: | RING/U-box superfamily protein |
chr4:15255955-15257977 REVERSE LENGTH=497
Length = 497
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 286 NARDATCIICREEMTTAK---KLICGHLFHVHCLRSWLERQHTCPTCRA 331
N DA C IC+EE T +L C H +HV C++ WL + CP C+A
Sbjct: 442 NKEDAKCSICQEEYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICKA 490
>AT3G05200.1 | Symbols: ATL6 | RING/U-box superfamily protein |
chr3:1477377-1478573 FORWARD LENGTH=398
Length = 398
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 277 FPDATPEELNARDATCIICREEMTTAKKL----ICGHLFHVHCLRSWLERQHTCPTCRA 331
+ D ++L + C IC E + L C H+FH HC+ +WLE TCP CRA
Sbjct: 113 YSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRA 171
>AT3G14320.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr3:4777731-4778345 REVERSE LENGTH=204
Length = 204
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 292 CIICREEMTTAKKL----ICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVA-GGQ 346
C++C E+ K C H FHV C+ SWL+ TCP CR V ++ T GG+
Sbjct: 88 CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRTRPELGGR 147
Query: 347 QGSQSDGHRQ 356
S + H Q
Sbjct: 148 DKSFNQNHDQ 157
>AT4G12140.1 | Symbols: | RING/U-box superfamily protein |
chr4:7266546-7267154 REVERSE LENGTH=202
Length = 202
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 276 RFPDATPEEL---NARDATCIICREEMTTAKK-----LICGHLFHVHCLRSWLERQHTCP 327
R EEL N +C IC + + ++ K + C H+FH CL WL+R++TCP
Sbjct: 134 RLGSMKAEELKSFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSCLVEWLKRKNTCP 193
Query: 328 TCRALV 333
CR ++
Sbjct: 194 MCRTVL 199
>AT3G56580.3 | Symbols: | RING/U-box superfamily protein |
chr3:20962563-20963525 FORWARD LENGTH=320
Length = 320
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 281 TPEELNARDATCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCR 330
T + L + D+ C +C++E + AK++ C H++H C+ WL + ++CP CR
Sbjct: 175 TQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 227
>AT3G56580.1 | Symbols: | RING/U-box superfamily protein |
chr3:20962563-20963525 FORWARD LENGTH=320
Length = 320
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 281 TPEELNARDATCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCR 330
T + L + D+ C +C++E + AK++ C H++H C+ WL + ++CP CR
Sbjct: 175 TQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 227
>AT3G56580.2 | Symbols: | RING/U-box superfamily protein |
chr3:20962563-20963525 FORWARD LENGTH=320
Length = 320
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 281 TPEELNARDATCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCR 330
T + L + D+ C +C++E + AK++ C H++H C+ WL + ++CP CR
Sbjct: 175 TQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCR 227