Miyakogusa Predicted Gene

Lj6g3v0922330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0922330.1 Non Chatacterized Hit- tr|G3AFJ7|G3AFJ7_SPAPN
Putative uncharacterized protein OS=Spathaspora
passal,29.93,0.0000005,ELONGIN-A-RELATED,NULL; TRANSCRIPTION
ELONGATION FACTOR B POLYPEPTIDE 3,NULL; Elongin_A,RNA
polymera,NODE_7552_length_995_cov_78.212059.path2.1
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42780.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   214   5e-56
AT2G42780.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   213   1e-55

>AT2G42780.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: regulation of transcription; LOCATED IN:
           integral to membrane, nucleus; EXPRESSED IN: 20 plant
           structures; EXPRESSED DURING: 11 growth stages; CONTAINS
           InterPro DOMAIN/s: RNA polymerase II transcription
           factor SIII, subunit A (InterPro:IPR010684); Has 187
           Blast hits to 186 proteins in 77 species: Archae - 0;
           Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38;
           Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
           | chr2:17801037-17802646 FORWARD LENGTH=293
          Length = 293

 Score =  214 bits (544), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 141/192 (73%), Gaps = 4/192 (2%)

Query: 9   VRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKASVGCDLSPV 68
            +K PSLVDLCV K IDN++Y+G VG VD  LLE+IL HCTLEQL H+E A+   DLSP+
Sbjct: 7   TKKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPI 66

Query: 69  TDKLWKKFFEKQFGTHSTNEVIKRMREKKVS-FKWMQLYEAKVKEIAEAENEAVARIKQR 127
           TDK WK F++K +G     ++I+ +   KV+ FKW  LYE KV  + + E E   R+K+R
Sbjct: 67  TDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKER 126

Query: 128 YQKEDARKQSRQVQLCTKTPPSSKKRFWGD--NGYNVSNLKSNIMKKSRIELLKSHEVKN 185
           Y+ E+ RKQSRQ ++C+K PP SK+ FWG+  +GYN+ ++KSNIMKK++I+LLKS EVKN
Sbjct: 127 YKDENERKQSRQTKVCSKAPP-SKRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKN 185

Query: 186 LAAMKNKSIQRN 197
           L A+K  +IQ++
Sbjct: 186 LTAIKRNTIQKS 197


>AT2G42780.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: regulation of transcription; LOCATED IN:
           integral to membrane, nucleus; EXPRESSED IN: 20 plant
           structures; EXPRESSED DURING: 11 growth stages; CONTAINS
           InterPro DOMAIN/s: RNA polymerase II transcription
           factor SIII, subunit A (InterPro:IPR010684). |
           chr2:17801037-17802646 FORWARD LENGTH=253
          Length = 253

 Score =  213 bits (541), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 141/192 (73%), Gaps = 4/192 (2%)

Query: 9   VRKLPSLVDLCVEKVIDNLRYLGNVGSVDHHLLERILPHCTLEQLMHVEKASVGCDLSPV 68
            +K PSLVDLCV K IDN++Y+G VG VD  LLE+IL HCTLEQL H+E A+   DLSP+
Sbjct: 7   TKKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPI 66

Query: 69  TDKLWKKFFEKQFGTHSTNEVIKRMREKKVS-FKWMQLYEAKVKEIAEAENEAVARIKQR 127
           TDK WK F++K +G     ++I+ +   KV+ FKW  LYE KV  + + E E   R+K+R
Sbjct: 67  TDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKER 126

Query: 128 YQKEDARKQSRQVQLCTKTPPSSKKRFWGD--NGYNVSNLKSNIMKKSRIELLKSHEVKN 185
           Y+ E+ RKQSRQ ++C+K PP SK+ FWG+  +GYN+ ++KSNIMKK++I+LLKS EVKN
Sbjct: 127 YKDENERKQSRQTKVCSKAPP-SKRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKN 185

Query: 186 LAAMKNKSIQRN 197
           L A+K  +IQ++
Sbjct: 186 LTAIKRNTIQKS 197