Miyakogusa Predicted Gene
- Lj6g3v0920690.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0920690.1 tr|B9GT26|B9GT26_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_551239 PE=4 SV=1,36.65,4e-18,
,CUFF.58526.1
(201 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06500.4 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 61 4e-10
AT1G06500.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 61 4e-10
AT1G06500.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 61 4e-10
AT1G06500.1 | Symbols: | unknown protein; Has 25 Blast hits to ... 61 4e-10
>AT1G06500.4 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:1990176-1990586 FORWARD LENGTH=136
Length = 136
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 66/160 (41%)
Query: 42 ESGRTQNLSNTGLIKEMTRMDEFKYGFPSESLSTTSNKWWGSSDHGDSTGTNPGTAKSQP 101
+SG++ +NT L K + +DEFK+GFPS L+T SNKWWG ++ G
Sbjct: 12 KSGKSNVWANTNLAKTVAAVDEFKFGFPSGGLTTVSNKWWGRAEKGGR------------ 59
Query: 102 EERGGEAEKVPCKTGNAENSETTQGSSLLTEENVACKTGNAENSETTQGSSLLTEENVAC 161
E+ GGE N EN AC
Sbjct: 60 EDGGGE---------NTENGHVA-----------------------------------AC 75
Query: 162 ETGNAQNSETPQGSSLLTAVRKRAVEEGREAFKLGVFRGY 201
+ QNS L A+RKR EEGREA +LG+ +G+
Sbjct: 76 D--ETQNS--------LVAIRKRIAEEGREAVELGLHQGF 105
>AT1G06500.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:1990176-1990586 FORWARD LENGTH=136
Length = 136
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 66/160 (41%)
Query: 42 ESGRTQNLSNTGLIKEMTRMDEFKYGFPSESLSTTSNKWWGSSDHGDSTGTNPGTAKSQP 101
+SG++ +NT L K + +DEFK+GFPS L+T SNKWWG ++ G
Sbjct: 12 KSGKSNVWANTNLAKTVAAVDEFKFGFPSGGLTTVSNKWWGRAEKGGR------------ 59
Query: 102 EERGGEAEKVPCKTGNAENSETTQGSSLLTEENVACKTGNAENSETTQGSSLLTEENVAC 161
E+ GGE N EN AC
Sbjct: 60 EDGGGE---------NTENGHVA-----------------------------------AC 75
Query: 162 ETGNAQNSETPQGSSLLTAVRKRAVEEGREAFKLGVFRGY 201
+ QNS L A+RKR EEGREA +LG+ +G+
Sbjct: 76 D--ETQNS--------LVAIRKRIAEEGREAVELGLHQGF 105
>AT1G06500.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has
35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:1990176-1990586 FORWARD
LENGTH=136
Length = 136
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 66/160 (41%)
Query: 42 ESGRTQNLSNTGLIKEMTRMDEFKYGFPSESLSTTSNKWWGSSDHGDSTGTNPGTAKSQP 101
+SG++ +NT L K + +DEFK+GFPS L+T SNKWWG ++ G
Sbjct: 12 KSGKSNVWANTNLAKTVAAVDEFKFGFPSGGLTTVSNKWWGRAEKGGR------------ 59
Query: 102 EERGGEAEKVPCKTGNAENSETTQGSSLLTEENVACKTGNAENSETTQGSSLLTEENVAC 161
E+ GGE N EN AC
Sbjct: 60 EDGGGE---------NTENGHVA-----------------------------------AC 75
Query: 162 ETGNAQNSETPQGSSLLTAVRKRAVEEGREAFKLGVFRGY 201
+ QNS L A+RKR EEGREA +LG+ +G+
Sbjct: 76 D--ETQNS--------LVAIRKRIAEEGREAVELGLHQGF 105
>AT1G06500.1 | Symbols: | unknown protein; Has 25 Blast hits to 25
proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr1:1990176-1990586 FORWARD LENGTH=136
Length = 136
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 66/160 (41%), Gaps = 66/160 (41%)
Query: 42 ESGRTQNLSNTGLIKEMTRMDEFKYGFPSESLSTTSNKWWGSSDHGDSTGTNPGTAKSQP 101
+SG++ +NT L K + +DEFK+GFPS L+T SNKWWG ++ G
Sbjct: 12 KSGKSNVWANTNLAKTVAAVDEFKFGFPSGGLTTVSNKWWGRAEKGGR------------ 59
Query: 102 EERGGEAEKVPCKTGNAENSETTQGSSLLTEENVACKTGNAENSETTQGSSLLTEENVAC 161
E+ GGE N EN AC
Sbjct: 60 EDGGGE---------NTENGHVA-----------------------------------AC 75
Query: 162 ETGNAQNSETPQGSSLLTAVRKRAVEEGREAFKLGVFRGY 201
+ QNS L A+RKR EEGREA +LG+ +G+
Sbjct: 76 D--ETQNS--------LVAIRKRIAEEGREAVELGLHQGF 105