Miyakogusa Predicted Gene

Lj6g3v0920420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0920420.1 Non Chatacterized Hit- tr|K4DB49|K4DB49_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.94,2e-18,seg,NULL,CUFF.58507.1
         (424 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54930.1 | Symbols:  | AT hook motif-containing protein | chr...    91   1e-18
AT5G54930.2 | Symbols:  | AT hook motif-containing protein | chr...    91   1e-18
AT4G21895.1 | Symbols:  | DNA binding | chr4:11613523-11614242 R...    84   1e-16
AT5G52890.1 | Symbols:  | AT hook motif-containing protein | chr...    81   1e-15
AT5G52890.2 | Symbols:  | AT hook motif-containing protein | chr...    81   1e-15

>AT5G54930.1 | Symbols:  | AT hook motif-containing protein |
           chr5:22305897-22306839 REVERSE LENGTH=286
          Length = 286

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 33/154 (21%)

Query: 80  DALVSQVVSGVIEAVFDAGYLLSVRVGDSDTTLRGVVFKPGRYVPISPENDVAPGVPMVQ 139
           +A+V Q +SGVIEA F+AG+LLSV+VG+SD+ LRGVVFKPG   P+S +NDVAP VPM++
Sbjct: 59  EAMVGQPISGVIEATFEAGFLLSVKVGNSDSMLRGVVFKPGHCDPVSVDNDVAPDVPMIR 118

Query: 140 RNEVPFPSRTTQVPTPLPKEKNEQPVHAFRIEGLPMNGSPTVPPGPRAT-VNSSNLVPCS 198
           RN                             +G    G  +     R + V S  LVP  
Sbjct: 119 RNS-----------------------DVMHHDGSAKRGRKSRFREKRGSGVRSRALVP-- 153

Query: 199 GKSVPSMTGQTSHP-LPRGNMVPVLLQPNNFSNG 231
              VP    Q +HP +P   +VPV+LQP +  NG
Sbjct: 154 ---VPI---QPAHPTIPNNLIVPVVLQPAHLENG 181


>AT5G54930.2 | Symbols:  | AT hook motif-containing protein |
           chr5:22305897-22306839 REVERSE LENGTH=283
          Length = 283

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 83/154 (53%), Gaps = 33/154 (21%)

Query: 80  DALVSQVVSGVIEAVFDAGYLLSVRVGDSDTTLRGVVFKPGRYVPISPENDVAPGVPMVQ 139
           +A+V Q +SGVIEA F+AG+LLSV+VG+SD+ LRGVVFKPG   P+S +NDVAP VPM++
Sbjct: 59  EAMVGQPISGVIEATFEAGFLLSVKVGNSDSMLRGVVFKPGHCDPVSVDNDVAPDVPMIR 118

Query: 140 RNEVPFPSRTTQVPTPLPKEKNEQPVHAFRIEGLPMNGSPTVPPGPRAT-VNSSNLVPCS 198
           RN                             +G    G  +     R + V S  LVP  
Sbjct: 119 RNS-----------------------DVMHHDGSAKRGRKSRFREKRGSGVRSRALVP-- 153

Query: 199 GKSVPSMTGQTSHP-LPRGNMVPVLLQPNNFSNG 231
              VP    Q +HP +P   +VPV+LQP +  NG
Sbjct: 154 ---VPI---QPAHPTIPNNLIVPVVLQPAHLENG 181


>AT4G21895.1 | Symbols:  | DNA binding | chr4:11613523-11614242
           REVERSE LENGTH=239
          Length = 239

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 48/62 (77%)

Query: 82  LVSQVVSGVIEAVFDAGYLLSVRVGDSDTTLRGVVFKPGRYVPISPENDVAPGVPMVQRN 141
           LV +VV+GVIE  FDAGYLL+V+V DSDT LRG+VF  GR  PI+PENDVAP V M  R 
Sbjct: 34  LVGKVVTGVIEGSFDAGYLLNVKVKDSDTQLRGLVFIRGRVTPITPENDVAPLVKMYGRE 93

Query: 142 EV 143
           ++
Sbjct: 94  DI 95


>AT5G52890.1 | Symbols:  | AT hook motif-containing protein |
           chr5:21445040-21446197 REVERSE LENGTH=357
          Length = 357

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 2/80 (2%)

Query: 82  LVSQVVSGVIEAVFDAGYLLSVRVGDSDTTLRGVVFKPGRYVPISPENDVAPGVPMVQRN 141
           L+ +VVSGV+E  F+AGY L+V+V D++  L+GVVF P +  P++P  D+ P   M  RN
Sbjct: 48  LIGRVVSGVVEGSFEAGYFLNVKVADTEKQLKGVVFLPQKVTPLTPATDLFPQAKMYARN 107

Query: 142 EVPFPSRTTQVPTPLPKEKN 161
           ++P PS   Q  TPL ++KN
Sbjct: 108 DIPIPSSYQQ--TPLQEKKN 125


>AT5G52890.2 | Symbols:  | AT hook motif-containing protein |
           chr5:21445040-21446197 REVERSE LENGTH=385
          Length = 385

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 2/80 (2%)

Query: 82  LVSQVVSGVIEAVFDAGYLLSVRVGDSDTTLRGVVFKPGRYVPISPENDVAPGVPMVQRN 141
           L+ +VVSGV+E  F+AGY L+V+V D++  L+GVVF P +  P++P  D+ P   M  RN
Sbjct: 48  LIGRVVSGVVEGSFEAGYFLNVKVADTEKQLKGVVFLPQKVTPLTPATDLFPQAKMYARN 107

Query: 142 EVPFPSRTTQVPTPLPKEKN 161
           ++P PS   Q  TPL ++KN
Sbjct: 108 DIPIPSSYQQ--TPLQEKKN 125