Miyakogusa Predicted Gene
- Lj6g3v0920410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0920410.1 Non Chatacterized Hit- tr|D7TZU9|D7TZU9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,35.77,0.000000000000009,SM-ATX,SM domain found in ataxin-2;
OS04G0625900 PROTEIN,NULL; ATAXIN 2-RELATED,NULL;
seg,NULL,CUFF.58499.1
(434 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54920.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 200 1e-51
AT4G26990.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 197 1e-50
AT5G54920.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 123 3e-28
AT3G14010.3 | Symbols: CID4 | CTC-interacting domain 4 | chr3:46... 82 8e-16
AT3G14010.2 | Symbols: CID4 | CTC-interacting domain 4 | chr3:46... 82 8e-16
AT3G14010.1 | Symbols: CID4 | CTC-interacting domain 4 | chr3:46... 82 8e-16
AT3G14010.4 | Symbols: CID4 | CTC-interacting domain 4 | chr3:46... 82 9e-16
AT1G54170.1 | Symbols: CID3 | CTC-interacting domain 3 | chr1:20... 72 1e-12
>AT5G54920.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G26990.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:22302111-22305576 FORWARD LENGTH=517
Length = 517
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 223/473 (47%), Gaps = 78/473 (16%)
Query: 22 ITDALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVG 81
+ +ALL++TMC+IGL V VH+ DGSV+SGIF+T S + + +VLK A++ KKG+ SNV
Sbjct: 23 LNEALLISTMCIIGLQVHVHINDGSVFSGIFYTVSLENEFSIVLKNAKLTKKGRSKSNVE 82
Query: 82 EQALVDTLLIPSDDLVQVVSKGITLPSNGVGGTCEIENDVGPMI---------------- 125
+V+TL+I S ++VQ+V++G++L SN V G E EN V +
Sbjct: 83 SGKIVETLVILSSNIVQIVAEGVSLSSN-VAGEIEGENVVSAVAVSSFNSGKNRRGTNRR 141
Query: 126 ------------DAKLVNQSSQAADVLSKGIADE------------------CRQKSEFA 155
A+ + A + G DE + +
Sbjct: 142 RNSAKRENCLESKARTLTSGETAGAMKEPGRRDENKYHPSSLNHQRQAGVRILKNSKKIT 201
Query: 156 NERSDEKIQSSNSSHEIDTCVGEVEAVERGSADTTSSPHDNGLL-CNNVPASVKANNSCT 214
+ ++ +++ +SS +D V+ +E+ + P NG P+S + ++S +
Sbjct: 202 DVHQEDNVEARSSSCSLDNMSERVKPIEQ---EKMPEPSSNGFHDATERPSSTENSSSQS 258
Query: 215 -----NSTLGVDLISESHDFPEKSVEISNPLGTDSIKNAKEFKLNPGAKLFSPSVVHPMI 269
NS + + L+ ++ P TD K AKEFKLNPGAK FSPS+ +
Sbjct: 259 TTVDENSEVSLVLVVSTNSLPPTQ-------ATDPDKKAKEFKLNPGAKTFSPSLAKRLT 311
Query: 270 VTTA--LPTAPNMVYIPNSS--LPT-TTIQPERGFTTFASRPSAPVKVAQYNNFTAGNGG 324
A P NM Y+P+++ LP +QPE G + F S S+P K Y N GN G
Sbjct: 312 SAHAGMTPVVANMGYVPSNTPMLPVPEAVQPEIGISPFLSHASSPSKFVPYTNLATGNAG 371
Query: 325 SGSQFSQ----PLAHRTQPLRYAAHYDPILSEPAYLQPNSPAVMAGRSTQLVY--PTSQD 378
GS F Q P +R QP R+ Y + P + PN P VM GRS QL+Y P SQD
Sbjct: 372 GGSHFPQHMVGPTINRGQPHRFTTQYHSVQPTPMLVNPN-PQVMVGRSGQLMYMQPISQD 430
Query: 379 WIHGAMAMSPASARPLL--NHVQYPKQQGG-TVGQAMPACMHPPVLTSGQQPF 428
+ GA S RPL QYPK Q GQ M P +G QP+
Sbjct: 431 LVQGAPHNSHLPPRPLFTPQQFQYPKHQSLIATGQPMHLYAPQPFAANGHQPY 483
>AT4G26990.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G54920.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:13551150-13554253 REVERSE LENGTH=474
Length = 474
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/425 (34%), Positives = 212/425 (49%), Gaps = 28/425 (6%)
Query: 26 LLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVGEQAL 85
L+ TMC+IGL V VHVKDGSV+SGIF TAS D G+G+VLK AR+ KKG SNV ++
Sbjct: 23 LIAATMCIIGLQVHVHVKDGSVFSGIFFTASVDNGFGIVLKDARITKKGTSISNVASGSV 82
Query: 86 VDTLLIPSDDLVQVVSKGITLPSNGVGGTCEIENDVGPMIDAKLVNQSSQAADVLSKGIA 145
VDTL+I S +VQ++++G++LPSN E+ + + + ++++ +V ++G
Sbjct: 83 VDTLVILSSTIVQIIAEGVSLPSNVTTANNEVGSATETLPSEPRLCAANKSTNVSTQGRG 142
Query: 146 DECRQKSEFANERSDEKIQSSNSSHEID---------TCVGEVEAVERGSADTTSSPHDN 196
++++ + +I ID + V+ +E + P N
Sbjct: 143 FNHKRQAGAQILKRSVQIPEVYQQDNIDIQSSSSSLDSMSERVKPIEED--NLMPEPLSN 200
Query: 197 GLLCNNVPASVKANNSCTNSTLGVDLISESHDFPEKSVEISNPLGTDSIKNAKEFKLNPG 256
G N +N + ST D + S S P+ ++K KEFKLNP
Sbjct: 201 G-FHNAAAKPSSTDNLLSESTPVDDTLELCRGRVAASSTASVPI--QAVKKPKEFKLNPE 257
Query: 257 AKLFSPSVVHPMIVT-TALPTAPNMVYIPNSS--LPT-TTIQPERGFTTFASRPSAPVKV 312
AK+FSPS + + +P N+ YIP+++ LP I PE + + P K
Sbjct: 258 AKIFSPSYTKRLSPSPVGMPHVGNIAYIPSNTPMLPVPEAIYPEVVNNPYVPQAPPPSKF 317
Query: 313 AQYNNFTAGNGGSGSQFSQ----PLAHRTQPLRYAAHYDPILSEPAYLQPNSPAVMAGRS 368
Y N TAG+ G QF Q P +R QP RY A Y + + P + P SP VM RS
Sbjct: 318 VPYGNVTAGHAVGGFQFPQHMIGPTVNRAQPQRYTAQYHSVQAAPMLVNP-SPQVMVARS 376
Query: 369 TQLVY--PTSQDWIHGAMAMSPASARPL--LNHVQYPKQQGGT-VGQAMPACMHPPVLTS 423
QLVY SQD + G +SP + PL HVQY K QG GQ +P C+ P T
Sbjct: 377 GQLVYVQSVSQDLVQGTPPLSPMLSCPLPTAQHVQYLKHQGVVAAGQPLPLCVSLPFTTG 436
Query: 424 GQQPF 428
G QP+
Sbjct: 437 GPQPY 441
>AT5G54920.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G26990.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr5:22302111-22305576
FORWARD LENGTH=522
Length = 522
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 101/202 (50%), Gaps = 15/202 (7%)
Query: 241 GTDSIKNAKEFKLNPGAKLFSPSVVHPMIVTTA--LPTAPNMVYIPNSS--LPT-TTIQP 295
TD K AKEFKLNPGAK FSPS+ + A P NM Y+P+++ LP +QP
Sbjct: 288 ATDPDKKAKEFKLNPGAKTFSPSLAKRLTSAHAGMTPVVANMGYVPSNTPMLPVPEAVQP 347
Query: 296 ERGFTTFASRPSAPVKVAQYNNFTAGNGGSGSQFSQ----PLAHRTQPLRYAAHYDPILS 351
E G + F S S+P K Y N GN G GS F Q P +R QP R+ Y +
Sbjct: 348 EIGISPFLSHASSPSKFVPYTNLATGNAGGGSHFPQHMVGPTINRGQPHRFTTQYHSVQP 407
Query: 352 EPAYLQPNSPAVMAGRSTQLVY--PTSQDWIHGAMAMSPASARPLL--NHVQYPKQQGG- 406
P + PN P VM GRS QL+Y P SQD + GA S RPL QYPK Q
Sbjct: 408 TPMLVNPN-PQVMVGRSGQLMYMQPISQDLVQGAPHNSHLPPRPLFTPQQFQYPKHQSLI 466
Query: 407 TVGQAMPACMHPPVLTSGQQPF 428
GQ M P +G QP+
Sbjct: 467 ATGQPMHLYAPQPFAANGHQPY 488
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 22 ITDALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVG 81
+ +ALL++TMC+IGL V VH+ DGSV+SGIF+T S + + +VLK A++ KKG+ SNV
Sbjct: 23 LNEALLISTMCIIGLQVHVHINDGSVFSGIFYTVSLENEFSIVLKNAKLTKKGRSKSNVE 82
Query: 82 EQALVDTLLIPSDDLVQVVSKGITLPSNGVGGTCEIENDV 121
+V+TL+I S ++VQ+V++G++L SN V G E EN V
Sbjct: 83 SGKIVETLVILSSNIVQIVAEGVSLSSN-VAGEIEGENVV 121
>AT3G14010.3 | Symbols: CID4 | CTC-interacting domain 4 |
chr3:4637164-4640691 FORWARD LENGTH=595
Length = 595
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 24 DALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVGEQ 83
D L+ T C IG V+VH+++GSVY+GIFH A+ + +G++LK A +IK G +
Sbjct: 47 DRLVYFTTCKIGHHVEVHLRNGSVYTGIFHAANVEKDFGIILKMACLIKDGTLRGHKSRS 106
Query: 84 ALV-----DTLLIPSDDLVQVVSKGITLPSNGVGGTCEIENDVGPMIDAKL 129
V T +IP+D+LVQV++K +++ SN + + E + D+ +
Sbjct: 107 EFVRKPPSKTFIIPADELVQVIAKDLSVSSNNMSNAVQGEKPSELLTDSSI 157
>AT3G14010.2 | Symbols: CID4 | CTC-interacting domain 4 |
chr3:4637164-4640691 FORWARD LENGTH=595
Length = 595
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 24 DALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVGEQ 83
D L+ T C IG V+VH+++GSVY+GIFH A+ + +G++LK A +IK G +
Sbjct: 47 DRLVYFTTCKIGHHVEVHLRNGSVYTGIFHAANVEKDFGIILKMACLIKDGTLRGHKSRS 106
Query: 84 ALV-----DTLLIPSDDLVQVVSKGITLPSNGVGGTCEIENDVGPMIDAKL 129
V T +IP+D+LVQV++K +++ SN + + E + D+ +
Sbjct: 107 EFVRKPPSKTFIIPADELVQVIAKDLSVSSNNMSNAVQGEKPSELLTDSSI 157
>AT3G14010.1 | Symbols: CID4 | CTC-interacting domain 4 |
chr3:4637164-4640691 FORWARD LENGTH=595
Length = 595
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 24 DALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVGEQ 83
D L+ T C IG V+VH+++GSVY+GIFH A+ + +G++LK A +IK G +
Sbjct: 47 DRLVYFTTCKIGHHVEVHLRNGSVYTGIFHAANVEKDFGIILKMACLIKDGTLRGHKSRS 106
Query: 84 ALV-----DTLLIPSDDLVQVVSKGITLPSNGVGGTCEIENDVGPMIDAKL 129
V T +IP+D+LVQV++K +++ SN + + E + D+ +
Sbjct: 107 EFVRKPPSKTFIIPADELVQVIAKDLSVSSNNMSNAVQGEKPSELLTDSSI 157
>AT3G14010.4 | Symbols: CID4 | CTC-interacting domain 4 |
chr3:4637164-4640324 FORWARD LENGTH=549
Length = 549
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 24 DALLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGKCNSNVGEQ 83
D L+ T C IG V+VH+++GSVY+GIFH A+ + +G++LK A +IK G +
Sbjct: 47 DRLVYFTTCKIGHHVEVHLRNGSVYTGIFHAANVEKDFGIILKMACLIKDGTLRGHKSRS 106
Query: 84 ALV-----DTLLIPSDDLVQVVSKGITLPSNGVGGTCEIENDVGPMIDAKL 129
V T +IP+D+LVQV++K +++ SN + + E + D+ +
Sbjct: 107 EFVRKPPSKTFIIPADELVQVIAKDLSVSSNNMSNAVQGEKPSELLTDSSI 157
>AT1G54170.1 | Symbols: CID3 | CTC-interacting domain 3 |
chr1:20221353-20224919 REVERSE LENGTH=587
Length = 587
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 26 LLVTTMCMIGLPVDVHVKDGSVYSGIFHTASADAGYGVVLKKARMIKKGK-CNSNVGEQA 84
L+ T C IG V+VH+K+GSVYSGIFH A+ + +G++LK A +I+ + S +
Sbjct: 52 LVYFTTCNIGHQVEVHLKNGSVYSGIFHAANVEKDFGIILKMACLIRDSRGTKSRTVSKP 111
Query: 85 LVDTLLIPSDDLVQVVSKGITL 106
L IP+D+LVQV++K + L
Sbjct: 112 SSKLLKIPADELVQVIAKDLPL 133