Miyakogusa Predicted Gene

Lj6g3v0920170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0920170.1 tr|G7IXK4|G7IXK4_MEDTR Vacuolar protein
sorting-associated protein-like protein OS=Medicago
truncatu,96,0,EAP30,EAP30; SUBFAMILY NOT NAMED,NULL; EAP30 SUBUNIT OF
ELL COMPLEX,EAP30; "Winged helix" DNA-bindin,CUFF.58482.1
         (250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27040.4 | Symbols: VPS22 | EAP30/Vps36 family protein | chr4...   453   e-128
AT4G27040.3 | Symbols: VPS22 | EAP30/Vps36 family protein | chr4...   453   e-128
AT4G27040.2 | Symbols: VPS22 | EAP30/Vps36 family protein | chr4...   453   e-128
AT4G27040.1 | Symbols: VPS22 | EAP30/Vps36 family protein | chr4...   453   e-128

>AT4G27040.4 | Symbols: VPS22 | EAP30/Vps36 family protein |
           chr4:13573061-13574576 REVERSE LENGTH=250
          Length = 250

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/250 (84%), Positives = 234/250 (93%)

Query: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ AAAARDQYRLLGENVAK+RTDMMKEQLSTFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINL 120
           PAFR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+++C+ TR HNGGLI+L
Sbjct: 61  PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query: 121 QELCSLLRQRRKSDRGVVTEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHN 180
           QELC+ LRQRRK DR  VTEDDCLRAISKLKVLGSGFEVI++GK+KLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query: 181 EILELAQAQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVS 240
           +ILELAQ QGFV V+EV+RRLSWTSGR IDAL+TLL+EGLAMID+GH+DGK RYWFPCVS
Sbjct: 181 QILELAQGQGFVIVEEVQRRLSWTSGRVIDALETLLEEGLAMIDNGHKDGKCRYWFPCVS 240

Query: 241 PISSLIGIDS 250
            + S IG D+
Sbjct: 241 SVYSSIGSDT 250


>AT4G27040.3 | Symbols: VPS22 | EAP30/Vps36 family protein |
           chr4:13573061-13574576 REVERSE LENGTH=250
          Length = 250

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/250 (84%), Positives = 234/250 (93%)

Query: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ AAAARDQYRLLGENVAK+RTDMMKEQLSTFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINL 120
           PAFR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+++C+ TR HNGGLI+L
Sbjct: 61  PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query: 121 QELCSLLRQRRKSDRGVVTEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHN 180
           QELC+ LRQRRK DR  VTEDDCLRAISKLKVLGSGFEVI++GK+KLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query: 181 EILELAQAQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVS 240
           +ILELAQ QGFV V+EV+RRLSWTSGR IDAL+TLL+EGLAMID+GH+DGK RYWFPCVS
Sbjct: 181 QILELAQGQGFVIVEEVQRRLSWTSGRVIDALETLLEEGLAMIDNGHKDGKCRYWFPCVS 240

Query: 241 PISSLIGIDS 250
            + S IG D+
Sbjct: 241 SVYSSIGSDT 250


>AT4G27040.2 | Symbols: VPS22 | EAP30/Vps36 family protein |
           chr4:13573061-13574576 REVERSE LENGTH=250
          Length = 250

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/250 (84%), Positives = 234/250 (93%)

Query: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ AAAARDQYRLLGENVAK+RTDMMKEQLSTFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINL 120
           PAFR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+++C+ TR HNGGLI+L
Sbjct: 61  PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query: 121 QELCSLLRQRRKSDRGVVTEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHN 180
           QELC+ LRQRRK DR  VTEDDCLRAISKLKVLGSGFEVI++GK+KLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query: 181 EILELAQAQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVS 240
           +ILELAQ QGFV V+EV+RRLSWTSGR IDAL+TLL+EGLAMID+GH+DGK RYWFPCVS
Sbjct: 181 QILELAQGQGFVIVEEVQRRLSWTSGRVIDALETLLEEGLAMIDNGHKDGKCRYWFPCVS 240

Query: 241 PISSLIGIDS 250
            + S IG D+
Sbjct: 241 SVYSSIGSDT 250


>AT4G27040.1 | Symbols: VPS22 | EAP30/Vps36 family protein |
           chr4:13573061-13574576 REVERSE LENGTH=250
          Length = 250

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/250 (84%), Positives = 234/250 (93%)

Query: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ AAAARDQYRLLGENVAK+RTDMMKEQLSTFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINL 120
           PAFR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+++C+ TR HNGGLI+L
Sbjct: 61  PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query: 121 QELCSLLRQRRKSDRGVVTEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHN 180
           QELC+ LRQRRK DR  VTEDDCLRAISKLKVLGSGFEVI++GK+KLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query: 181 EILELAQAQGFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHRDGKRRYWFPCVS 240
           +ILELAQ QGFV V+EV+RRLSWTSGR IDAL+TLL+EGLAMID+GH+DGK RYWFPCVS
Sbjct: 181 QILELAQGQGFVIVEEVQRRLSWTSGRVIDALETLLEEGLAMIDNGHKDGKCRYWFPCVS 240

Query: 241 PISSLIGIDS 250
            + S IG D+
Sbjct: 241 SVYSSIGSDT 250