Miyakogusa Predicted Gene

Lj6g3v0896580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0896580.1 Non Chatacterized Hit- tr|E1Z8V7|E1Z8V7_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,42.06,2e-18,seg,NULL; Ankyrin repeat,Ankyrin
repeat-containing domain; ANK_REP_REGION,Ankyrin repeat-containing
,NODE_75465_length_657_cov_68.515984.path1.1
         (175 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50900.1 | Symbols: GDC1 | Ankyrin repeat family protein | ch...   219   6e-58

>AT1G50900.1 | Symbols: GDC1 | Ankyrin repeat family protein |
           chr1:18866272-18867014 FORWARD LENGTH=175
          Length = 175

 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/144 (73%), Positives = 122/144 (84%), Gaps = 2/144 (1%)

Query: 33  FLGIRRRVGCLRLTSSIGPSNGSKATCWFRFGKNGVDAEGAGIYGSQSRDDFDRDDVEQY 92
           FLG R     +R  + +GPSNGS+ TCWF+FGKNGVDAE AGIYGSQSRDDFDRDDVEQY
Sbjct: 33  FLGTRNLKLRIR-PARLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQSRDDFDRDDVEQY 91

Query: 93  FNYMGMLAVEGTYDKMEALLSQKIHPVDILLLLAASEGDMPKIEELLRAGAKYDVRDGDG 152
           FNYMGMLAVEGTY KMEALL+  IHPVDILL+LAA+EGD PKIEELL+AGA Y V+D DG
Sbjct: 92  FNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAATEGDRPKIEELLKAGADYSVKDADG 151

Query: 153 RTALDRAN-DEVKDFILNFSVQRA 175
           RTA+DRAN +E++D IL +S Q+A
Sbjct: 152 RTAIDRANSEEIRDLILGYSTQKA 175