Miyakogusa Predicted Gene

Lj6g3v0885350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0885350.1 Non Chatacterized Hit- tr|I3SWH4|I3SWH4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,90.86,0,TRANSLATION INITIATION INHIBITOR,YjgF/Yer057p/UK114
family; YjgF-like,Endoribonuclease L-PSP/chorism,CUFF.58437.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20390.1 | Symbols:  | endoribonuclease L-PSP family protein ...   221   1e-58

>AT3G20390.1 | Symbols:  | endoribonuclease L-PSP family protein |
           chr3:7110227-7111695 REVERSE LENGTH=187
          Length = 187

 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/140 (79%), Positives = 125/140 (89%)

Query: 34  RSSPFACLSLSTDTRTKEAVQTEKAPAALGPYSQAIKANNLLFVSGVLGLDPETGKFISD 93
           RS PFA LS+S  +  KE V TEKAPAALGPYSQAIKANNL+F+SGVLGL PETGKF+S+
Sbjct: 48  RSPPFASLSVSASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSE 107

Query: 94  NVEDQTEQILKNMGEILKSGGASYTSVVKTTILLADLKDFKKVNEIYAKYFTSPAPARST 153
           +VEDQTEQ+LKNMGEILK+ GA Y+SVVKTTI+LADL DFK VNEIYAKYF +P+PARST
Sbjct: 108 SVEDQTEQVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARST 167

Query: 154 YQVAALPLDAKIEIECIAAL 173
           YQVAALPL+AKIEIECIA L
Sbjct: 168 YQVAALPLNAKIEIECIATL 187