Miyakogusa Predicted Gene

Lj6g3v0872240.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0872240.2 Non Chatacterized Hit- tr|Q4W8V2|Q4W8V2_MOUSE
Putative uncharacterized protein OS=Mus musculus
GN=St,29.11,1e-18,Helical region found in SNAREs,Target SNARE
coiled-coil domain; seg,NULL; t-snare proteins,t-SNARE; ,CUFF.58421.2
         (245 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28490.1 | Symbols: SYP61, ATSYP61, OSM1 | syntaxin of plants...   287   4e-78
AT1G28490.2 | Symbols: SYP61, ATSYP61, OSM1 | syntaxin of plants...   209   1e-54

>AT1G28490.1 | Symbols: SYP61, ATSYP61, OSM1 | syntaxin of plants 61
           | chr1:10016433-10017842 FORWARD LENGTH=245
          Length = 245

 Score =  287 bits (735), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/211 (68%), Positives = 169/211 (80%), Gaps = 4/211 (1%)

Query: 1   MPSAQDPFYVVKAEIQESIDKLQSVFRQWER-APDAVERGHLTKEVLAGCGSIEWQVDEL 59
           M SAQDPFY+VK EIQ+SIDKLQS F +WER +PD  ++ H+ KE++A CGSIEWQVDEL
Sbjct: 1   MSSAQDPFYIVKEEIQDSIDKLQSTFHKWERISPDMGDQAHVAKELVATCGSIEWQVDEL 60

Query: 60  DKAIAVASKEPSWYGIGEVEIENRRRWTSSARTQVGAVKKTVEGGKGSSTTSHQSVRGMH 119
           +KAI VA+K+PSWYGI E E+E RRRWTS+ARTQV  VK  V  GK SS   H S   + 
Sbjct: 61  EKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAGHAS--EVR 118

Query: 120 QELMRLPNSHQTNTSNHYAAEDDD-FIQSESDRQMLLIKRQDEELDELSSSVQRIGGVGL 178
           +ELMR+PNS + +  + Y   DDD F+QSESDRQMLLIK+QDEELDELS SVQRIGGVGL
Sbjct: 119 RELMRMPNSGEASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGL 178

Query: 179 TIHDELIAQERIVDELGNEMDSTTNRLDFVQ 209
           TIHDEL+AQERI+DEL  EMDST NRL+FVQ
Sbjct: 179 TIHDELVAQERIIDELDTEMDSTKNRLEFVQ 209


>AT1G28490.2 | Symbols: SYP61, ATSYP61, OSM1 | syntaxin of plants 61
           | chr1:10016634-10017842 FORWARD LENGTH=206
          Length = 206

 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 126/171 (73%), Gaps = 3/171 (1%)

Query: 55  QVDELDKAIAVASKEPSWYGIGEVEIENRRRWTSSARTQVGAVKKTVEGGKGSSTTSHQS 114
           +VDEL+KAI VA+K+PSWYGI E E+E RRRWTS+ARTQV  VK  V  GK SS   H S
Sbjct: 17  KVDELEKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAGHAS 76

Query: 115 VRGMHQELMRLPNSHQTNTSNHYAAEDDD-FIQSESDRQMLLIKRQDEELDELSSSVQRI 173
              + +ELMR+PNS + +  + Y   DDD F+QSESDRQMLLIK+QDEELDELS SVQRI
Sbjct: 77  --EVRRELMRMPNSGEASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRI 134

Query: 174 GGVGLTIHDELIAQERIVDELGNEMDSTTNRLDFVQXXXXXXXXXXXXXGQ 224
           GGVGLTIHDEL+AQERI+DEL  EMDST NRL+FVQ             GQ
Sbjct: 135 GGVGLTIHDELVAQERIIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQ 185