Miyakogusa Predicted Gene

Lj6g3v0871220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0871220.1 CUFF.58420.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26965.2 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kD...    88   1e-18
AT4G26965.1 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kD...    88   1e-18

>AT4G26965.2 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kDa
           subunit | chr4:13539832-13542041 FORWARD LENGTH=147
          Length = 147

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 3/110 (2%)

Query: 1   MMELEARREQVRQNVALLXXXXXXXXXXXGSTGKRVSTGKVSGPDLKSFVQQLRDPSEGV 60
           M+ELEARRE+V+ NVALL           G TG++++ GKV GPDL SFV+Q    S+G 
Sbjct: 39  MIELEARRERVKLNVALLKKEEEEKKARVG-TGRKITIGKVDGPDLTSFVRQFPPDSKGG 97

Query: 61  KVEESSGAMDGLR--DSQDNAGEKEKVELESSEPTGSGPSFRPGTWQPPT 108
           + EE+S   D  R  + +      E  E +++EP+GSG SFRPGTWQPP+
Sbjct: 98  EPEEASEEADKSRAKEHEPEIVSAEPPEPKTTEPSGSGSSFRPGTWQPPS 147


>AT4G26965.1 | Symbols:  | NADH:ubiquinone oxidoreductase, 17.2kDa
           subunit | chr4:13539717-13542041 FORWARD LENGTH=184
          Length = 184

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 3/110 (2%)

Query: 1   MMELEARREQVRQNVALLXXXXXXXXXXXGSTGKRVSTGKVSGPDLKSFVQQLRDPSEGV 60
           M+ELEARRE+V+ NVALL           G TG++++ GKV GPDL SFV+Q    S+G 
Sbjct: 76  MIELEARRERVKLNVALLKKEEEEKKARVG-TGRKITIGKVDGPDLTSFVRQFPPDSKGG 134

Query: 61  KVEESSGAMDGLR--DSQDNAGEKEKVELESSEPTGSGPSFRPGTWQPPT 108
           + EE+S   D  R  + +      E  E +++EP+GSG SFRPGTWQPP+
Sbjct: 135 EPEEASEEADKSRAKEHEPEIVSAEPPEPKTTEPSGSGSSFRPGTWQPPS 184